TCONS_00022778 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022778
Unique NameTCONS_00022778
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length717

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022778 ID=TCONS_00022778|Name=TCONS_00022778|organism=Clytia hemisphaerica|type=transcript|length=717bp
TAACATCTGAAAAGCTGTATCAGGAGACCAAAGACAAAGACATGGATGTT
GTTATCGATGAATTCGAACATTGCTCTTTGGCCCTTCACAACGAAACTAG
GGATTGTCCTGAAGTCAACGGTGACGAATTTGCCACCTGTTTTGCATTAA
CTCCTGCTGCAAATCATGATATTGAAGATTTGCCTTCAGAAACCTTGGTA
CTCCAACAGAGATGCCAGGAGGTTGATGCTGAAAATGATGCTGattgaag
aaattctttaattatttactaaattttttaattctcatacaattctttta
attttctttggtaattcagtatttttactctTATGCTTATATACGATTCA
TCTCTCTCTCTAAACAAATTGCCTATTAATGTTATGTTTTATGCAAGTCT
CGAAAATTAGCTGATCCTTTACTTTACAAGGGCCATTAAACATGCTTTGT
CAAGTTTTTTGTGTTTGCATAGATCGTTTCTAGCGTACATATTTCGCGGT
GAATTTTAGTATCCTTTTTATAGTATTATGCTGTCATTTTATAGATTATG
CTGTATTATGTCGTACACTTTTATTGATAGATCTTTATGCTTTGTAGTAA
ATTTTCTCTTCGACTGATTTGTATgcattttttgaagaatttcttctgTT
TTGTAAACAAGGGAATTTTTATTAGTGAAATACATACATTTAGGATATGT
TTCTTCTGTTTGACTGA
Run BLAST on NCBI

transcript from alignment at sc0000432:157936..159274-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022778 ID=TCONS_00022778|Name=TCONS_00022778|organism=Clytia hemisphaerica|type=transcript|length=1339bp|location=Sequence derived from alignment at sc0000432:157936..159274- (Clytia hemisphaerica)
TAACATCTGAAAAGCTGTATCAGGAGACCAAAGACAAAGGTGTGGTTTTT
TTTAATCACCCTGTATATGATACTTCATGAGCATCGATACTACTCAACGA
ATAATAGGGTTCTGACAAACCGTGGAAAACATTTCATGGAAACTAAGGGA
ATTTCTTTTTAAACTGTTTATCACTCAAGGAAACAATTTCATCTATAACA
GAATAGCTTGATATTTAAAATCTTGACCTTCTGCGCCAACAACTATGACC
CACACAGGTCTCTTGGATTTCATTTGAAGGTGTTTTGTTTCATACTTTAG
ACATGGATGTTGTTATCGATGAATTCGAACATTGCTCTTTGGCCCTTCAC
AACGAAACTAGGGATTGTCCTGAAGTCAACGGTGACGAATTTGCCACCTG
TTTTGCATTAACTCCTGCTGCAAATCATGATATTGAAGATTTGCCTTCAG
AAACCTTGGTACTCCAACAGAGGTTTGCCTTACTTTTTTTTTTTAATGAG
ACCATTCTCGGATAAAAAAAGAGGGCACATATTCGTTTCAAGTATTACAG
CTCCAATCTCTACCAGTCAAAGAAAAGAAAATTCTATTTTCTTTTCAAAT
CATGTCTGTAGGATGGTAATTCTCTCATATTTTAAAGCCTTTTTAATCAT
CTCTAATGCTAATGGTCTAATTGTATGTATTTTTCTACGGCCACAGATAA
ATCAGTTTTATAAATGGGTATTCCCTGTCATTTATGTTTTCCCTTTGACA
ATGTTTATAAGATACTCAAATTCAACAATTCTTATAAGAAAGAAATAGAT
GATTTAATGGTAGTTTTTATGTTATTTTTTTAGATGCCAGGAGGTTGATG
CTGAAAATGATGCTGATTGAAGAAATTCTTTAATTATTTACTAAATTTTT
TAATTCTCATACAATTCTTTTAATTTTCTTTGGTAATTCAGTATTTTTAC
TCTTATGCTTATATACGATTCATCTCTCTCTCTAAACAAATTGCCTATTA
ATGTTATGTTTTATGCAAGTCTCGAAAATTAGCTGATCCTTTACTTTACA
AGGGCCATTAAACATGCTTTGTCAAGTTTTTTGTGTTTGCATAGATCGTT
TCTAGCGTACATATTTCGCGGTGAATTTTAGTATCCTTTTTATAGTATTA
TGCTGTCATTTTATAGATTATGCTGTATTATGTCGTACACTTTTATTGAT
AGATCTTTATGCTTTGTAGTAAATTTTCTCTTCGACTGATTTGTATGCAT
TTTTTGAAGAATTTCTTCTGTTTTGTAAACAAGGGAATTTTTATTAGTGA
AATACATACATTTAGGATATGTTTCTTCTGTTTGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012792XLOC_012792Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022778-exon-sc0000432-1575043694:159236..159274TCONS_00022778-exon-sc0000432-1575043694:159236..159274Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1575043694:158803..158974TCONS_00022778-exon-sc0000432-1575043694:158803..158974Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1575043694:157936..158441TCONS_00022778-exon-sc0000432-1575043694:157936..158441Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1510915933:159236..159274TCONS_00022778-exon-sc0000432-1510915933:159236..159274Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1510915933:158803..158974TCONS_00022778-exon-sc0000432-1510915933:158803..158974Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1510915933:157936..158441TCONS_00022778-exon-sc0000432-1510915933:157936..158441Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1491911889:159236..159274TCONS_00022778-exon-sc0000432-1491911889:159236..159274Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1491911889:158803..158974TCONS_00022778-exon-sc0000432-1491911889:158803..158974Clytia hemisphaericaexon
TCONS_00022778-exon-sc0000432-1491911889:157936..158441TCONS_00022778-exon-sc0000432-1491911889:157936..158441Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000432supercontigsc0000432:157936..159274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	4.97508	5.64413	5.57073	4.85241	8.25444	7.35806	0	0	0	0	0	0.120708	0	0	0	0	0.127291	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022778 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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