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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022800 ID=TCONS_00022800|Name=TCONS_00022800|organism=Clytia hemisphaerica|type=transcript|length=2764bp
GGGTTAAAGTGTTTAGATGTTCAAACATTATGATCTCCTGGACTTTCACA
CTTTTTGACCCCTTTGATATCCACAAAAATGACCTTATCTTTTGACCACT
TCTAAACAGTCCTTTATCACAGACACGGTGGCACTCCCTCCCCCTCTAGG
AAGGAGGTATTTCTATATACAGGCTTTTGATGTACATAAACATACTGGAT
GTACGCGATATCCACCATACCCCcaagaaaattttctctgaaaagcccta
tataaataaaaaatttgtcatcatcaaattttaagtttataaATTATCTA
ATTCACTCCATAAATGATCAAATAAATCCATATCGTAATTCTGCTGACCA
GATGGAAAGCTGAAATTATCTGTACTGTTGATTAATTTATCTTGAATGTT
TGTGTTATTattgaaatttgtgtttttcgtTATTATTTTATCGTTTGTGG
TTGTGTTCGGTAAAATATCACCATAAACAAAACTATCTGTACTAAAAATA
TCGTCTTTGAAATTATCAAACAAGTCCAGATGTTGATCAACGCCCATATT
TTGAAGATTCGGCGAAGAATCGGTTAGACTAGTATCAAATGCATCTAGAC
TGGAAGTTACACTTGGTACGATTTTCTCGCTACTGGAACCCAAGCTAGAT
ACACTTGGAATATCCGTGTTAGAATAGAAGACAGAATTTTCATCTTCTGG
AAGAGACTCGGGAGAGAGCATATCTAGGCTATCATAATCATAACTGTTGC
ATTTTGTATGGAAAGCTTTCCGGTTGTCAGATAACTTGTTTGGTGTAGAT
TGTGCGTTACTTTCCTGAAGTTTGTGTCGCTTACTTAAATGCTCAGCTAT
ATCATTTTCCTCAAGTTTACGCTTCAAACATCTTAACAAAGCCTCGACGT
CAGACTTTGGGATAAGAGCGTTCGGGTTCTTAGCTAGGATACCATCGATC
GTATTTATGTTATGATAAAGTTCGTTACATTCGTTCGGTTGAGTCAGATC
GTCTAAAACGAAATCATTTTTCGGTAGAGGAGTAGGTGACTTGATCTGAT
GATCACTCAATGTTTTTAGAGAAGATATTTTTTCATCCGAGGTGTTCATC
AAAGGTGggctttgaatttttcttttcaacacAGTTTTATTATGTTGCGT
GGGGGAAGGTTCATCAATTATTTCTATTGATTGTTCCGTCTCAAAATGAC
CGCTCGCTGTGCAAGGTGATGATGTCAGATCAATTTTGATGGGTGTCTTG
TCATTTATCCTCATATCTCCCTTATCGGTGACAATCTGCTCCTGTGAATG
AATTGACAGATCCTTGTCATCTTGAGTTGATGAAAACTGTGAAGTCCCTT
TCACTGTAGTGTGCGATTTGTTGACGTCAGAAGGCGTCACATTTCTCGTT
GCCGTCGTTGTCGGATTCTTTGTTACTGTTAATCgttctttttcgttttt
attgcaCGAATTTTCTTTAAGCTGCTCCAATACCGACATGGTTAATATCT
TAGTTCCTTTCTCGGGTACTTTCACCTTCGATTtgctaattattttttca
atatcctGCGTTTCAGTTTTCATCGGCGAAGTTTGTTCGTTTAATTTGAT
ATCTTTCACTAGTTTCAAGTCCTCATCATTAAATattcttttctcgtttt
cttcttcaattttcggTTTGGAGGTTGCGTTATTTGATAGAGCGACTTTC
AGACTGTCTAAGTGTGGTTGGACGCGGACTTTAAAGCCTTTCTTGGCTGC
AGTGACGTATTTTTCATATAGATTCTCAGGGACTGTGTAGACAAGTTGAT
GTAGTTGACCTTGAGAATCTTGTACTAAACACAACGGGATTTGGTTAGCC
GCCATTTGTCCTTGTATATTGGCACATGTTTGTCTAAGAGAGTTGGAAGA
AGGAGAGGAATCTAACATTTTGATCTCCTTAGATAAAGGTGGATTTGCCG
CAGTGTCTTTTTTAATTATGGCGGAGGTTGGCGGCTGGGGCGAAAAAATA
AATCGAGGATCAACGAAAGGTGACGAGAGGCCATACATCCCTGGTTGATA
GGCGGTGGTGGGCGGGATGGGCGTTTGGTATCCGATAAAGCCGTTAGCTC
CTTGGTTCATGAAATAAAATTGCTGATGGGCGTGGGCGTTGGCGTGGCCT
TGCACGAGAAGTGGTTTTCCTGTCGTTTGTGTTGCTTGAACTGAAGTTGG
GAAAATTTTTGGTGCATGCATCGTTGGGAAGGATGAAGTTAACTTCAATT
GTGTCGGTGGATGTTTAATGATGTTGGGTTTGATGTTTTGTAGTTTCGGT
GATTTTTCCGGTGATTTTTGAGTAACCGGTGAGCAAGGCGAATCAGGTGA
TTCCGTTGATGTATCGGAAACAGCCGGTGAGTCAATGTCCGGGATTTGAA
AGGAGGAGAAAAGTTGTTGTGGTGTTTTGTATGACGATTCTGATTCAGAC
GAACCTTGTTTGGAAGTTTGTTTCTCTTGTTGGTCTGGTTGTGTTTCGAT
ACAAACTTTGCCAAAACTCATGCTCATGTAAGTTTGATTGATGTCTTTAT
AGTGTAATATAATTCTTTTagttttcgtttttatttattCTCCATTTGGA
AAAATCTAAGGACAAcagaaaataaaagtaaatcaaaGATTACCCAAAAT
GATAAATATGGTCAAAAATGTGTTTTTCGAACGAAGAGTTACTGACTCCA
GAAATCAAAACCAATACCCTAAGATGCCAGACATATGAAAAAACATCGGA
GAAACAGAAACCAG Run BLAST on NCBI protein sequence of TCONS_00022800-protein >TCONS_00022800-protein ID=TCONS_00022800-protein|Name=TCONS_00022800-protein|organism=Clytia hemisphaerica|type=polypeptide|length=746bp
MSMSFGKVCIETQPDQQEKQTSKQGSSESESSYKTPQQLFSSFQIPDIDS
PAVSDTSTESPDSPCSPVTQKSPEKSPKLQNIKPNIIKHPPTQLKLTSSF
PTMHAPKIFPTSVQATQTTGKPLLVQGHANAHAHQQFYFMNQGANGFIGY
QTPIPPTTAYQPGMYGLSSPFVDPRFIFSPQPPTSAIIKKDTAANPPLSK
EIKMLDSSPSSNSLRQTCANIQGQMAANQIPLCLVQDSQGQLHQLVYTVP
ENLYEKYVTAAKKGFKVRVQPHLDSLKVALSNNATSKPKIEEENEKRIFN
DEDLKLVKDIKLNEQTSPMKTETQDIEKIISKSKVKVPEKGTKILTMSVL
EQLKENSCNKNEKERLTVTKNPTTTATRNVTPSDVNKSHTTVKGTSQFSS
TQDDKDLSIHSQEQIVTDKGDMRINDKTPIKIDLTSSPCTASGHFETEQS
IEIIDEPSPTQHNKTVLKRKIQSPPLMNTSDEKISSLKTLSDHQIKSPTP
LPKNDFVLDDLTQPNECNELYHNINTIDGILAKNPNALIPKSDVEALLRC
LKRKLEENDIAEHLSKRHKLQESNAQSTPNKLSDNRKAFHTKCNSYDYDS
LDMLSPESLPEDENSVFYSNTDIPSVSSLGSSSEKIVPSVTSSLDAFDTS
LTDSSPNLQNMGVDQHLDLFDNFKDDIFSTDSFVYGDILPNTTTNDKIIT
KNTNFNNNTNIQDKLINSTDNFSFPSGQQNYDMDLFDHLWSELDNL Run BLAST on NCBI transcript from alignment at sc0000432:201807..204570 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022800 ID=TCONS_00022800|Name=TCONS_00022800|organism=Clytia hemisphaerica|type=transcript|length=2764bp|location=Sequence derived from alignment at sc0000432:201807..204570 (Clytia hemisphaerica)
CTGGTTTCTGTTTCTCCGATGTTTTTTCATATGTCTGGCATCTTAGGGTA
TTGGTTTTGATTTCTGGAGTCAGTAACTCTTCGTTCGAAAAACACATTTT
TGACCATATTTATCATTTTGGGTAATCtttgatttacttttattttctgT
TGTCCTTAGATTTTTCCAAATGGAGaataaataaaaacgaaaactAAAAG
AATTATATTACACTATAAAGACATCAATCAAACTTACATGAGCATGAGTT
TTGGCAAAGTTTGTATCGAAACACAACCAGACCAACAAGAGAAACAAACT
TCCAAACAAGGTTCGTCTGAATCAGAATCGTCATACAAAACACCACAACA
ACTTTTCTCCTCCTTTCAAATCCCGGACATTGACTCACCGGCTGTTTCCG
ATACATCAACGGAATCACCTGATTCGCCTTGCTCACCGGTTACTCAAAAA
TCACCGGAAAAATCACCGAAACTACAAAACATCAAACCCAACATCATTAA
ACATCCACCGACACAATTGAAGTTAACTTCATCCTTCCCAACGATGCATG
CACCAAAAATTTTCCCAACTTCAGTTCAAGCAACACAAACGACAGGAAAA
CCACTTCTCGTGCAAGGCCACGCCAACGCCCACGCCCATCAGCAATTTTA
TTTCATGAACCAAGGAGCTAACGGCTTTATCGGATACCAAACGCCCATCC
CGCCCACCACCGCCTATCAACCAGGGATGTATGGCCTCTCGTCACCTTTC
GTTGATCCTCGATTTATTTTTTCGCCCCAGCCGCCAACCTCCGCCATAAT
TAAAAAAGACACTGCGGCAAATCCACCTTTATCTAAGGAGATCAAAATGT
TAGATTCCTCTCCTTCTTCCAACTCTCTTAGACAAACATGTGCCAATATA
CAAGGACAAATGGCGGCTAACCAAATCCCGTTGTGTTTAGTACAAGATTC
TCAAGGTCAACTACATCAACTTGTCTACACAGTCCCTGAGAATCTATATG
AAAAATACGTCACTGCAGCCAAGAAAGGCTTTAAAGTCCGCGTCCAACCA
CACTTAGACAGTCTGAAAGTCGCTCTATCAAATAACGCAACCTCCAAAcc
gaaaattgaagaagaaaacgagaaaagaatATTTAATGATGAGGACTTGA
AACTAGTGAAAGATATCAAATTAAACGAACAAACTTCGCCGATGAAAACT
GAAACGCaggatattgaaaaaataattagcaAATCGAAGGTGAAAGTACC
CGAGAAAGGAACTAAGATATTAACCATGTCGGTATTGGAGCAGCTTAAAG
AAAATTCGtgcaataaaaacgaaaaagaacGATTAACAGTAACAAAGAAT
CCGACAACGACGGCAACGAGAAATGTGACGCCTTCTGACGTCAACAAATC
GCACACTACAGTGAAAGGGACTTCACAGTTTTCATCAACTCAAGATGACA
AGGATCTGTCAATTCATTCACAGGAGCAGATTGTCACCGATAAGGGAGAT
ATGAGGATAAATGACAAGACACCCATCAAAATTGATCTGACATCATCACC
TTGCACAGCGAGCGGTCATTTTGAGACGGAACAATCAATAGAAATAATTG
ATGAACCTTCCCCCACGCAACATAATAAAACTgtgttgaaaagaaaaatt
caaagccCACCTTTGATGAACACCTCGGATGAAAAAATATCTTCTCTAAA
AACATTGAGTGATCATCAGATCAAGTCACCTACTCCTCTACCGAAAAATG
ATTTCGTTTTAGACGATCTGACTCAACCGAACGAATGTAACGAACTTTAT
CATAACATAAATACGATCGATGGTATCCTAGCTAAGAACCCGAACGCTCT
TATCCCAAAGTCTGACGTCGAGGCTTTGTTAAGATGTTTGAAGCGTAAAC
TTGAGGAAAATGATATAGCTGAGCATTTAAGTAAGCGACACAAACTTCAG
GAAAGTAACGCACAATCTACACCAAACAAGTTATCTGACAACCGGAAAGC
TTTCCATACAAAATGCAACAGTTATGATTATGATAGCCTAGATATGCTCT
CTCCCGAGTCTCTTCCAGAAGATGAAAATTCTGTCTTCTATTCTAACACG
GATATTCCAAGTGTATCTAGCTTGGGTTCCAGTAGCGAGAAAATCGTACC
AAGTGTAACTTCCAGTCTAGATGCATTTGATACTAGTCTAACCGATTCTT
CGCCGAATCTTCAAAATATGGGCGTTGATCAACATCTGGACTTGTTTGAT
AATTTCAAAGACGATATTTTTAGTACAGATAGTTTTGTTTATGGTGATAT
TTTACCGAACACAACCACAAACGATAAAATAATAacgaaaaacacaaatt
tcaatAATAACACAAACATTCAAGATAAATTAATCAACAGTACAGATAAT
TTCAGCTTTCCATCTGGTCAGCAGAATTACGATATGGATTTATTTGATCA
TTTATGGAGTGAATTAGATAATttataaacttaaaatttgatgatgacaa
attttttatttatatagggcttttcagagaaaattttcttgGGGGTATGG
TGGATATCGCGTACATCCAGTATGTTTATGTACATCAAAAGCCTGTATAT
AGAAATACCTCCTTCCTAGAGGGGGAGGGAGTGCCACCGTGTCTGTGATA
AAGGACTGTTTAGAAGTGGTCAAAAGATAAGGTCATTTTTGTGGATATCA
AAGGGGTCAAAAAGTGTGAAAGTCCAGGAGATCATAATGTTTGAACATCT
AAACACTTTAACCC Coding sequence (CDS) from alignment at sc0000432:201807..204570 >TCONS_00022800 ID=TCONS_00022800|Name=TCONS_00022800|organism=Clytia hemisphaerica|type=CDS|length=2241bp|location=Sequence derived from alignment at sc0000432:201807..204570 (Clytia hemisphaerica)
ATGAGCATGAGTTTTGGCAAAGTTTGTATCGAAACACAACCAGACCAACA
AGAGAAACAAACTTCCAAACAAGGTTCGTCTGAATCAGAATCGTCATACA
AAACACCACAACAACTTTTCTCCTCCTTTCAAATCCCGGACATTGACTCA
CCGGCTGTTTCCGATACATCAACGGAATCACCTGATTCGCCTTGCTCACC
GGTTACTCAAAAATCACCGGAAAAATCACCGAAACTACAAAACATCAAAC
CCAACATCATTAAACATCCACCGACACAATTGAAGTTAACTTCATCCTTC
CCAACGATGCATGCACCAAAAATTTTCCCAACTTCAGTTCAAGCAACACA
AACGACAGGAAAACCACTTCTCGTGCAAGGCCACGCCAACGCCCACGCCC
ATCAGCAATTTTATTTCATGAACCAAGGAGCTAACGGCTTTATCGGATAC
CAAACGCCCATCCCGCCCACCACCGCCTATCAACCAGGGATGTATGGCCT
CTCGTCACCTTTCGTTGATCCTCGATTTATTTTTTCGCCCCAGCCGCCAA
CCTCCGCCATAATTAAAAAAGACACTGCGGCAAATCCACCTTTATCTAAG
GAGATCAAAATGTTAGATTCCTCTCCTTCTTCCAACTCTCTTAGACAAAC
ATGTGCCAATATACAAGGACAAATGGCGGCTAACCAAATCCCGTTGTGTT
TAGTACAAGATTCTCAAGGTCAACTACATCAACTTGTCTACACAGTCCCT
GAGAATCTATATGAAAAATACGTCACTGCAGCCAAGAAAGGCTTTAAAGT
CCGCGTCCAACCACACTTAGACAGTCTGAAAGTCGCTCTATCAAATAACG
CAACCTCCAAAccgaaaattgaagaagaaaacgagaaaagaatATTTAAT
GATGAGGACTTGAAACTAGTGAAAGATATCAAATTAAACGAACAAACTTC
GCCGATGAAAACTGAAACGCaggatattgaaaaaataattagcaAATCGA
AGGTGAAAGTACCCGAGAAAGGAACTAAGATATTAACCATGTCGGTATTG
GAGCAGCTTAAAGAAAATTCGtgcaataaaaacgaaaaagaacGATTAAC
AGTAACAAAGAATCCGACAACGACGGCAACGAGAAATGTGACGCCTTCTG
ACGTCAACAAATCGCACACTACAGTGAAAGGGACTTCACAGTTTTCATCA
ACTCAAGATGACAAGGATCTGTCAATTCATTCACAGGAGCAGATTGTCAC
CGATAAGGGAGATATGAGGATAAATGACAAGACACCCATCAAAATTGATC
TGACATCATCACCTTGCACAGCGAGCGGTCATTTTGAGACGGAACAATCA
ATAGAAATAATTGATGAACCTTCCCCCACGCAACATAATAAAACTgtgtt
gaaaagaaaaattcaaagccCACCTTTGATGAACACCTCGGATGAAAAAA
TATCTTCTCTAAAAACATTGAGTGATCATCAGATCAAGTCACCTACTCCT
CTACCGAAAAATGATTTCGTTTTAGACGATCTGACTCAACCGAACGAATG
TAACGAACTTTATCATAACATAAATACGATCGATGGTATCCTAGCTAAGA
ACCCGAACGCTCTTATCCCAAAGTCTGACGTCGAGGCTTTGTTAAGATGT
TTGAAGCGTAAACTTGAGGAAAATGATATAGCTGAGCATTTAAGTAAGCG
ACACAAACTTCAGGAAAGTAACGCACAATCTACACCAAACAAGTTATCTG
ACAACCGGAAAGCTTTCCATACAAAATGCAACAGTTATGATTATGATAGC
CTAGATATGCTCTCTCCCGAGTCTCTTCCAGAAGATGAAAATTCTGTCTT
CTATTCTAACACGGATATTCCAAGTGTATCTAGCTTGGGTTCCAGTAGCG
AGAAAATCGTACCAAGTGTAACTTCCAGTCTAGATGCATTTGATACTAGT
CTAACCGATTCTTCGCCGAATCTTCAAAATATGGGCGTTGATCAACATCT
GGACTTGTTTGATAATTTCAAAGACGATATTTTTAGTACAGATAGTTTTG
TTTATGGTGATATTTTACCGAACACAACCACAAACGATAAAATAATAacg
aaaaacacaaatttcaatAATAACACAAACATTCAAGATAAATTAATCAA
CAGTACAGATAATTTCAGCTTTCCATCTGGTCAGCAGAATTACGATATGG
ATTTATTTGATCATTTATGGAGTGAATTAGATAATttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022800-exon-sc0000432-1491911889:201807..204570 | TCONS_00022800-exon-sc0000432-1491911889:201807..204570 | Clytia hemisphaerica | exon |
| TCONS_00022800-exon-sc0000432-1510915933:201807..204570 | TCONS_00022800-exon-sc0000432-1510915933:201807..204570 | Clytia hemisphaerica | exon |
| TCONS_00022800-exon-sc0000432-1575043694:201807..204570 | TCONS_00022800-exon-sc0000432-1575043694:201807..204570 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000432 | supercontig | sc0000432:201807..204570 . |
Blast
The following BLAST results are available for this feature:
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