TCONS_00022805 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022805
Unique NameTCONS_00022805
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length409

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022805 ID=TCONS_00022805|Name=TCONS_00022805|organism=Clytia hemisphaerica|type=transcript|length=409bp
ACCAAGTTGTTTTACATTACATCTGCCATTTTTGACCACCTACCTGTTAG
TGATCCCTATAACTCACTTATATTAATCTTTATTAAGGATCATttcgttt
caatttttttttcagtgaccCTTATTGTATGATCAAGCTTTTCCATGACC
GTGAAAATCCTTTTGACAAATTCAATACTTCCACAGTGAAGAAGGTAAGA
TATTTGCCCCTCTCGTTTGTTAtggtttattttcaaatttcatcatttta
taTTACTTGTGCAGTGATCTCAAGCTTAGGTTGGGACCTATTTCCACTAT
GGGAaggtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct
gtctgtctg
Run BLAST on NCBI

transcript from alignment at sc0000434:654..1062+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022805 ID=TCONS_00022805|Name=TCONS_00022805|organism=Clytia hemisphaerica|type=transcript|length=409bp|location=Sequence derived from alignment at sc0000434:654..1062+ (Clytia hemisphaerica)
ACCAAGTTGTTTTACATTACATCTGCCATTTTTGACCACCTACCTGTTAG
TGATCCCTATAACTCACTTATATTAATCTTTATTAAGGATCATttcgttt
caatttttttttcagtgaccCTTATTGTATGATCAAGCTTTTCCATGACC
GTGAAAATCCTTTTGACAAATTCAATACTTCCACAGTGAAGAAGGTAAGA
TATTTGCCCCTCTCGTTTGTTAtggtttattttcaaatttcatcatttta
taTTACTTGTGCAGTGATCTCAAGCTTAGGTTGGGACCTATTTCCACTAT
GGGAaggtgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgt
ctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtct
gtctgtctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012818XLOC_012818Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022805-exon-sc0000434-1491911889:654..1062TCONS_00022805-exon-sc0000434-1491911889:654..1062Clytia hemisphaericaexon
TCONS_00022805-exon-sc0000434-1510915933:654..1062TCONS_00022805-exon-sc0000434-1510915933:654..1062Clytia hemisphaericaexon
TCONS_00022805-exon-sc0000434-1575043694:654..1062TCONS_00022805-exon-sc0000434-1575043694:654..1062Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:654..1062 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.272972	0.396866	1.53758	0	0	0	0	0	0.249298	0	0	0	0.204909	0.126349	0	0	0	0.274518	0	0	1.16877	0	0	0.225668	0.620947	0	0	0.331497	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022805 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top