TCONS_00022832 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022832
Unique NameTCONS_00022832
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length929

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022832 ID=TCONS_00022832|Name=TCONS_00022832|organism=Clytia hemisphaerica|type=transcript|length=929bp
gtaaagttataagaaatttcttctgtaagattataaaaGAAAGTCTTTCG
CCATGAAGTTATCTCGTGTTTTAATTATGTTATCTTGTGTCGTGGCGTCC
ACTTTGCTAATTGCGGCAACCGCTGGCGTCGCTTGGGGTCGCAATGAAAA
TAATGGCGCGTTAATTGGtttgtggaaattttgtgatcgTGCTATTTGTC
ACAAATTCAAAGAAATGACGGTTGAAGGTTGGTGGTATGCGATTCGAGTG
AACATGGTGTTGTCTTTATTGAGTGCATTTAGTGGATTCATTCTCTCCTT
TGCAATGGTATTGAATAACTCTTTGAGCACCATTTGGTTGGCCCTCATCT
ACTTCATCTCAGGTGTTCTGTCAGCATCCAGCCTCATCGTGTGGGGAATC
AAAATCACACCACCCTATCGTCTCTCGTACAGTTATGTTCTTGGTTTGAT
CGCGTTTGTGTTAGAATTACTTGtcattgtttgttgttttttggaaGAAG
TTCAAAAGAGGAGAAATCGAAGAAGTTCATCATCAGATGGTTCCAATAGC
GATCTGCAGAATTTACAAATTTAACTGGCTGGGTTGTTCAATTGTTTATC
ATTGAGCTTAtgtttaaaaataacaatttcgcaTTGCTCCAGTATATAgt
tttcccagctggcacacaacgttctttcaacgtttatctaacgttcacaa
cgtccatataacgttagatgaacgttgaaacaacgtcgtgtgtcagctgg
gttcgTTACTAATCAAGAGCGTTCATATTGGTTTTAGATGTGGATggtga
aatttgtcgttttttttttaatgttccgAAGTAGGCACTTTCTCTACCTC
GAAGACGTAATTTGTGAATATGGCCTAAAATTAGCATTGTTCAATGATTT
AAACATGATAATATAATTTGATATCTTCG
Run BLAST on NCBI

protein sequence of TCONS_00022832-protein

>TCONS_00022832-protein ID=TCONS_00022832-protein|Name=TCONS_00022832-protein|organism=Clytia hemisphaerica|type=polypeptide|length=173bp
MKLSRVLIMLSCVVASTLLIAATAGVAWGRNENNGALIGLWKFCDRAICH
KFKEMTVEGWWYAIRVNMVLSLLSAFSGFILSFAMVLNNSLSTIWLALIY
FISGVLSASSLIVWGIKITPPYRLSYSYVLGLIAFVLELLVIVCCFLEEV
QKRRNRRSSSSDGSNSDLQNLQI
Run BLAST on NCBI

transcript from alignment at sc0000434:112047..116573-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022832 ID=TCONS_00022832|Name=TCONS_00022832|organism=Clytia hemisphaerica|type=transcript|length=4527bp|location=Sequence derived from alignment at sc0000434:112047..116573- (Clytia hemisphaerica)
GTAAAGTTATAAGAAATTTCTTCTGTAAGATTATAAAAGAAAGTCTTTCG
CCATGAAGTTATCTCGTGTTTTAATTATGTTATCTTGTGTCGTGGCGTCC
ACTTTGCTAATTGCGGCAACCGCTGGCGTCGCTTGGGGTCGCAATGAAAA
TAATGGCGCGTTAATTGGTTTGTGGAAATTTTGTGATCGTGCTATTTGTC
ACAAATTCAAAGAAATGACGGTTGAAGGTATGAGGAATTTTCATCGATTT
CCAAAGAAAGTAGCACCCCTGTCTGACTGTAATATTTACCGAGAAAAATT
AGCTATACCCTTATTTCATTTAAACAATGGGCTATTCTATTAAAAAGCCA
TACATGGGGTGGACGAACCTTTTCAAGTCAAAAAAGAATTTGTGAAAATT
TGTGGATACCCCCTGGAGAATGGCAAAATTTGAAAAAATACCCAAAATTA
TTTTCATATCTAAAAGTTAGGGTGGACGAGCTAAAAATCAGTCTTTTACC
CCCTGGAAATTTTTCTCGAATTACCCTCTGGAAATGGTCGTCCACCCCCC
CCCCATGTATAGATATAAAATGGAATGACCCAATTGCCAAGAAAAATTAA
CACCCCTGTCTCACTGAAACGTTCAAGAAAATTTAGCACCCCTGTCTCAC
TGAAACGTTCAAGAAAATTTAGCACCCCTGTCTCACTGAAACGTTCAAGA
AAATTTAGCACCCCTGTCTCACTGAAACGTTCAAGAAAATTTAGCACCCC
TGTCTCACTGAAACGTTCAAGAAAATTTAGCACCCCTGTCTCACTGAAAC
GTTCAAGAAAATTTAGCACCCCTGTCTCACTGAAACGTTCAAGAAAATTT
AGCACCTCTGTCTCACTTAAATGTTTACCAAGAAAATTTAGAACCCCTGT
CTCATTAAACCTGCACTTGATACTTGATAATTGCCCGTTGTATGCTTGCA
GAAGGATCAAGGGTGAGTGTAGAAAGACCTACCTTCGGGTAGATAGCTAT
CCAAAGAGGAGCTTTCCGACTCGCAAAACTTTACTTATTATTGTTCACAG
GTTGGTGGTATGCGATTCGAGTGAACATGGTGTTGTCTTTATTGAGTGCA
TTTAGTGGATTCATTCTCTCCTTTGCAATGGTATTGAATAACTCTTTGAG
CACCATTTGGTTGGCCCTCATCTACTTCATCTCAGGTAAGACAAATCCTC
AGAACAAAACCACACTCTTTTGAAGGGCTACAGCGAACGCTCTCACTGGT
ATTCAGCCTATCAGTGAAACAGGTTATGCAAATTGCTTTTGTGTACGACG
TTGTGAAAATGATTTGCTGCAGTGCCGTTGAGAGTATTTTAATATTCACT
CCCTCGAACAGATGTAAAATAGAATGGAAAATCAGTAATTTATGACTGAA
GTTAAAAAAACATTTCTATAAATATTATTTTCTGGCGGGCGCAAAGTCGC
CCCTTGCTACGGCAATATGATGTTTTGGCAATCTTGATTACCAATGGTTT
TTCATCTGATCTTTTTTCAGGTCATTTTCCAGCGTACATTTAACTTTACA
TTTGTTTTGCTTCTGTCGTCTAATTGGGAAATCTGTCGTGACCGTGCCTC
TCAATGAACTTTCTGATAATATTCTTCAAAATGAATAATGCTTTTTAGAA
ACCACCCTAGTATACTCAAAATAAAAGAAAAGGTATCAAACAATGAAAAC
TCCTTCAAGTTTAGAAACACCACCGAAGACGAAGTANNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAAAAGGAATTCCTTTCGTAGTAGAGTAGTTGAAAGTGAAA
TGAATGGAAAATCGTCTTTAGCTTTCCTGGGACCTAAAATCTGGGCTACC
CTTCCCGATGACTATAAAAAACTTAAAAACCTAGATGAATTTAAAAAAGA
AATCAAGCAATGGAGGCCCACTACTACTACGTCCTTGCCGAAACTGTCGC
ACTTTTATCCATGGCGTTGGTTTCATTGATTGAATTTAAATTAATTTGTA
AATAATAGTTGATCTTGAGTATCAACCTTCTAGATAGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNTTGAGTATCAACCTTCTAGATAGATTTGTAATT
AATAGTTGATATTGATTAGCCTCGAGCTAAGTACACATTGTACTACTTTG
CATCAACTTTAAAGAAAACAAACATAAACATAAACATAAACCGTAGTGAC
GGAGACGTAAGGTCTGTAATAGGCTTCAGAAGGCCTGACAAGGGAACTTC
AGTCACCGCGTTTGGCCTGGAAGGGTAAACGCGCGGTGAAAGCATAGCAA
AAATGAGTGATTATGAGGTGTTCTAAGGCCTGCAATAGTCTTCTTATTAT
GAAGAGACCATTTACAAGAATAACTTACATTTGCACTGTCCTGTCGTTTT
TCTGCTAACTGCAAGAGACGAGATGGAGTTTTTACAAGCTTTTATTTGAT
TTGGCTGGTCGTTAACCATTAATAAAACAATTTTGTTACCTTTTCTAAAG
AACGTGTCATTTTTACTACTTCAACTGAACAATTATTAAAGTATCACATA
AAAACTCCATCCCATCTGAACTGGAAGGGTAGGCCATGAAAAATTCTTTT
CCCTTTCCAGGTGTTCTGTCAGCATCCAGCCTCATCGTGTGGGGAATCAA
AATCACACCACCCTATCGTCTCTCGTACAGTTATGTTCTTGGTTTGATCG
CGTTTGTGTTAGAATTACTTGTCATTGTTTGTTGTTTTTTGGAAGAAGTT
CAAAAGAGGAGAAATCGAAGAAGTTCATCATCAGATGGTTCCAATAGCGA
TCTGCAGAATTTACAAATTTAACTGGCTGGGTTGTTCAATTGTTTATCAT
TGAGCTTATGTTTAAAAATAACAATTTCGCATTGCTCCAGTATATAGTTT
TCCCAGCTGGCACACAACGTTCTTTCAACGTTTATCTAACGTTCACAACG
TCCATATAACGTTAGATGAACGTTGAAACAACGTCGTGTGTCAGCTGGGT
TCGTTACTAATCAAGAGCGTTCATATTGGTTTTAGATGTGGATGGTGAAA
TTTGTCGTTTTTTTTTTAATGTTCCGAAGTAGGCACTTTCTCTACCTCGA
AGACGTAATTTGTGAATATGGCCTAAAATTAGCATTGTTCAATGATTTAA
ACATGATAATATAATTTGATATCTTCG

Coding sequence (CDS) from alignment at sc0000434:112047..116573-

>TCONS_00022832 ID=TCONS_00022832|Name=TCONS_00022832|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000434:112047..116573- (Clytia hemisphaerica)
GTGTTCTGTCAGCATCCAGCCTCATCGTGTGGGGAATCAAAATCACACCA
CCCTATCGTCTCTCGTACAGTTATGTTCTTGGTTTGATCGCGTTTGTGTT
AGAATTACTTGTCATTGTTTGTTGTTTTTTGGAAGAAGTTCAAAAGAGGA
GAAATCGAAGAAGTTCATCATCAGATGGTTCCAATAGCGATCTGCAGAAT
TTACAAATTTAAGTTGGTGGTATGCGATTCGAGTGAACATGGTGTTGTCT
TTATTGAGTGCATTTAGTGGATTCATTCTCTCCTTTGCAATGGTATTGAA
TAACTCTTTGAGCACCATTTGGTTGGCCCTCATCTACTTCATCTCAGATG
AAGTTATCTCGTGTTTTAATTATGTTATCTTGTGTCGTGGCGTCCACTTT
GCTAATTGCGGCAACCGCTGGCGTCGCTTGGGGTCGCAATGAAAATAATG
GCGCGTTAATTGGTTTGTGGAAATTTTGTGATCGTGCTATTTGTCACAAA
TTCAAAGAAATGACGGTTGAAGGTGTTCTGTCAGCATCCAGCCTCATCGT
GTGGGGAATCAAAATCACACCACCCTATCGTCTCTCGTACAGTTATGTTC
TTGGTTTGATCGCGTTTGTGTTAGAATTACTTGTCATTGTTTGTTGTTTT
TTGGAAGAAGTTCAAAAGAGGAGAAATCGAAGAAGTTCATCATCAGATGG
TTCCAATAGCGATCTGCAGAATTTACAAATTTAAGTTGGTGGTATGCGAT
TCGAGTGAACATGGTGTTGTCTTTATTGAGTGCATTTAGTGGATTCATTC
TCTCCTTTGCAATGGTATTGAATAACTCTTTGAGCACCATTTGGTTGGCC
CTCATCTACTTCATCTCAGATGAAGTTATCTCGTGTTTTAATTATGTTAT
CTTGTGTCGTGGCGTCCACTTTGCTAATTGCGGCAACCGCTGGCGTCGCT
TGGGGTCGCAATGAAAATAATGGCGCGTTAATTGGTTTGTGGAAATTTTG
TGATCGTGCTATTTGTCACAAATTCAAAGAAATGACGGTTGAAGGTGTTC
TGTCAGCATCCAGCCTCATCGTGTGGGGAATCAAAATCACACCACCCTAT
CGTCTCTCGTACAGTTATGTTCTTGGTTTGATCGCGTTTGTGTTAGAATT
ACTTGTCATTGTTTGTTGTTTTTTGGAAGAAGTTCAAAAGAGGAGAAATC
GAAGAAGTTCATCATCAGATGGTTCCAATAGCGATCTGCAGAATTTACAA
ATTTAAGTTGGTGGTATGCGATTCGAGTGAACATGGTGTTGTCTTTATTG
AGTGCATTTAGTGGATTCATTCTCTCCTTTGCAATGGTATTGAATAACTC
TTTGAGCACCATTTGGTTGGCCCTCATCTACTTCATCTCAGATGAAGTTA
TCTCGTGTTTTAATTATGTTATCTTGTGTCGTGGCGTCCACTTTGCTAAT
TGCGGCAACCGCTGGCGTCGCTTGGGGTCGCAATGAAAATAATGGCGCGT
TAATTGGTTTGTGGAAATTTTGTGATCGTGCTATTTGTCACAAATTCAAA
GAAATGACGGTTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012829XLOC_012829Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022832-proteinTCONS_00022832-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022832-exon-sc0000434-1575043694:116347..116573TCONS_00022832-exon-sc0000434-1575043694:116347..116573Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1575043694:115389..115523TCONS_00022832-exon-sc0000434-1575043694:115389..115523Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1575043694:112047..112613TCONS_00022832-exon-sc0000434-1575043694:112047..112613Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1510915933:116347..116573TCONS_00022832-exon-sc0000434-1510915933:116347..116573Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1510915933:115389..115523TCONS_00022832-exon-sc0000434-1510915933:115389..115523Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1510915933:112047..112613TCONS_00022832-exon-sc0000434-1510915933:112047..112613Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1491911889:116347..116573TCONS_00022832-exon-sc0000434-1491911889:116347..116573Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1491911889:115389..115523TCONS_00022832-exon-sc0000434-1491911889:115389..115523Clytia hemisphaericaexon
TCONS_00022832-exon-sc0000434-1491911889:112047..112613TCONS_00022832-exon-sc0000434-1491911889:112047..112613Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000434supercontigsc0000434:112047..116573 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.348518	0.386783	0.343065	0.620509	1.33244	1.05606	4.88797	4.8287	5.56737	2.97803	4.79059	2.57681	0.953602	0.583167	0.513326	0.742417	1.30947	1.40289	0.990013	0.668388	1.46469	1.36423	1.20094	1.56337	0.582686	0.854919	1.18443	1.45496	0.986988	0.307462
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022832 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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