TCONS_00022887 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022887
Unique NameTCONS_00022887
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022887 ID=TCONS_00022887|Name=TCONS_00022887|organism=Clytia hemisphaerica|type=transcript|length=338bp
CTTTCAACGACTTTCCAACTTACATACTACTAAGTTGACCATTTTCAGAA
GAATTTCGCAGCCCTATAGAACATGGGTATTCAATATCTATCTTAAGATG
AATACCCTTGAAATCCCAGACTGTATGATCGGTTCAAACAGCTTGGGCAT
TGATTCTACAATCCCAGAATGCCAAGAGTTTATGACGTCACTCTACGAAG
GGCGCTTGAAAATAGAATGTCCATTTTCTACAGTTAGAATTGAGAGTGAT
CTTCGTGGGGTCGATTTGAGGAATGCCGTGTTCCTGGTCAATCATTTGAA
CCTCAAATTGAAAATCCCAGAGATTATGATGGATACTG
Run BLAST on NCBI

protein sequence of TCONS_00022887-protein

>TCONS_00022887-protein ID=TCONS_00022887-protein|Name=TCONS_00022887-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
FQRLSNLHTTKLTIFRRISQPYRTWVFNIYLKMNTLEIPDCMIGSNSLGI
DSTIPECQEFMTSLYEGRLKIECPFSTVRIESDLRGVDLRNAVFLVNHLN
LKLKIPEIMMDT
Run BLAST on NCBI

transcript from alignment at sc0000435:171412..171749

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022887 ID=TCONS_00022887|Name=TCONS_00022887|organism=Clytia hemisphaerica|type=transcript|length=338bp|location=Sequence derived from alignment at sc0000435:171412..171749 (Clytia hemisphaerica)
CAGTATCCATCATAATCTCTGGGATTTTCAATTTGAGGTTCAAATGATTG
ACCAGGAACACGGCATTCCTCAAATCGACCCCACGAAGATCACTCTCAAT
TCTAACTGTAGAAAATGGACATTCTATTTTCAAGCGCCCTTCGTAGAGTG
ACGTCATAAACTCTTGGCATTCTGGGATTGTAGAATCAATGCCCAAGCTG
TTTGAACCGATCATACAGTCTGGGATTTCAAGGGTATTCATCTTAAGATA
GATATTGAATACCCATGTTCTATAGGGCTGCGAAATTCTTCTGAAAATGG
TCAACTTAGTAGTATGTAAGTTGGAAAGTCGTTGAAAG

Coding sequence (CDS) from alignment at sc0000435:171412..171749

>TCONS_00022887 ID=TCONS_00022887|Name=TCONS_00022887|organism=Clytia hemisphaerica|type=CDS|length=336bp|location=Sequence derived from alignment at sc0000435:171412..171749 (Clytia hemisphaerica)
AGTATCCATCATAATCTCTGGGATTTTCAATTTGAGGTTCAAATGATTGA
CCAGGAACACGGCATTCCTCAAATCGACCCCACGAAGATCACTCTCAATT
CTAACTGTAGAAAATGGACATTCTATTTTCAAGCGCCCTTCGTAGAGTGA
CGTCATAAACTCTTGGCATTCTGGGATTGTAGAATCAATGCCCAAGCTGT
TTGAACCGATCATACAGTCTGGGATTTCAAGGGTATTCATCTTAAGATAG
ATATTGAATACCCATGTTCTATAGGGCTGCGAAATTCTTCTGAAAATGGT
CAACTTAGTAGTATGTAAGTTGGAAAGTCGTTGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012865XLOC_012865Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022887-proteinTCONS_00022887-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022887-exon-sc0000435-1491911889:171412..171749TCONS_00022887-exon-sc0000435-1491911889:171412..171749Clytia hemisphaericaexon
TCONS_00022887-exon-sc0000435-1510915933:171412..171749TCONS_00022887-exon-sc0000435-1510915933:171412..171749Clytia hemisphaericaexon
TCONS_00022887-exon-sc0000435-1575043694:171412..171749TCONS_00022887-exon-sc0000435-1575043694:171412..171749Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:171412..171749 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.31139	0.609293	0.741756	0.879218	4.24296	5.29627	1.39052	2.00944	3.90083	1.46529	6.76753	5.50855	7.65207	9.21737	4.33556	3.17415	3.50821	5.81256	2.39313	1.94548	0.630662	1.14673	7.08661	3.95289	0	1.60983	1.8315	3.11001
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022887 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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