TCONS_00022889 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022889
Unique NameTCONS_00022889
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length819

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022889 ID=TCONS_00022889|Name=TCONS_00022889|organism=Clytia hemisphaerica|type=transcript|length=819bp
aGATTATTAAGATAAAATCAAAATGACAGTTTAAAATATATCACTATGTC
ATCCTACGTTACTGTAGCTCAAGccattcaagaaattgaaaactggCTGA
GATTGGCTACTTTGCTTAACGAGCCTTTAAAAGAATCACTGCTCGCTCTT
TTGCATAATGATTATAATCACAATTATGTTGGTCTGCCGAGGAACCCAGC
AGCTCTCAACGCTGAACTCCGAAAACAACAGATCAATATTAACCAGTTAG
CAAAGAAAGGGGTTTTAAAGAAAGACCAAGTTGACACTTTACTTCCCCCG
AATTCAAATCAAACAGACAGCCAGACGTTTGATATAACTCTCATAATCGT
TTTGATTATCAATTTTACAACATTGCCACCGCCTAAAAAtggttggaata
aaaaaataGCAGCTGGTGATTCCAGTCATTCAGCATATGTCATTCTTGCT
CGTGATTGGCGAAACCGTCTTTTACATGCTGACGCTAAAAGTATTGATTT
GAATGAATTTAACTTGAGATGGAACGAAGGAGAAAAGATTGTCATTGGTT
TAGGTTTTACAACTTATAATATGAACGCCTTGAGAACCAGACCGCTTGAC
GTTACAAATAATCTAGTAGTCCAGTCGCTGTCCTTTTTCTCGAAAAAGAT
TCTGAACGAACTCGCAAACGTTAGCgtaaatcatattcaaattaCAAAGG
ACATTCTGGCTCAAAGTCAAGTGATTTCAAAACAGGACAAAACCATATCC
TCACTGGACACTGCTCTGAACAACCACGCCACCGCCCTTTCATCACAAGA
CACTATCCTGAACAACCAC
Run BLAST on NCBI

protein sequence of TCONS_00022889-protein

>TCONS_00022889-protein ID=TCONS_00022889-protein|Name=TCONS_00022889-protein|organism=Clytia hemisphaerica|type=polypeptide|length=258bp
MSSYVTVAQAIQEIENWLRLATLLNEPLKESLLALLHNDYNHNYVGLPRN
PAALNAELRKQQININQLAKKGVLKKDQVDTLLPPNSNQTDSQTFDITLI
IVLIINFTTLPPPKNGWNKKIAAGDSSHSAYVILARDWRNRLLHADAKSI
DLNEFNLRWNEGEKIVIGLGFTTYNMNALRTRPLDVTNNLVVQSLSFFSK
KILNELANVSVNHIQITKDILAQSQVISKQDKTISSLDTALNNHATALSS
QDTILNNH
Run BLAST on NCBI

transcript from alignment at sc0000435:175890..176708

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022889 ID=TCONS_00022889|Name=TCONS_00022889|organism=Clytia hemisphaerica|type=transcript|length=819bp|location=Sequence derived from alignment at sc0000435:175890..176708 (Clytia hemisphaerica)
GTGGTTGTTCAGGATAGTGTCTTGTGATGAAAGGGCGGTGGCGTGGTTGT
TCAGAGCAGTGTCCAGTGAGGATATGGTTTTGTCCTGTTTTGAAATCACT
TGACTTTGAGCCAGAATGTCCTTTGtaatttgaatatgatttacGCTAAC
GTTTGCGAGTTCGTTCAGAATCTTTTTCGAGAAAAAGGACAGCGACTGGA
CTACTAGATTATTTGTAACGTCAAGCGGTCTGGTTCTCAAGGCGTTCATA
TTATAAGTTGTAAAACCTAAACCAATGACAATCTTTTCTCCTTCGTTCCA
TCTCAAGTTAAATTCATTCAAATCAATACTTTTAGCGTCAGCATGTAAAA
GACGGTTTCGCCAATCACGAGCAAGAATGACATATGCTGAATGACTGGAA
TCACCAGCTGCtatttttttattccaaccaTTTTTAGGCGGTGGCAATGT
TGTAAAATTGATAATCAAAACGATTATGAGAGTTATATCAAACGTCTGGC
TGTCTGTTTGATTTGAATTCGGGGGAAGTAAAGTGTCAACTTGGTCTTTC
TTTAAAACCCCTTTCTTTGCTAACTGGTTAATATTGATCTGTTGTTTTCG
GAGTTCAGCGTTGAGAGCTGCTGGGTTCCTCGGCAGACCAACATAATTGT
GATTATAATCATTATGCAAAAGAGCGAGCAGTGATTCTTTTAAAGGCTCG
TTAAGCAAAGTAGCCAATCTCAGccagttttcaatttcttgaatggCTTG
AGCTACAGTAACGTAGGATGACATAGTGATATATTTTAAACTGTCATTTT
GATTTTATCTTAATAATCt

Coding sequence (CDS) from alignment at sc0000435:175890..176708

>TCONS_00022889 ID=TCONS_00022889|Name=TCONS_00022889|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000435:175890..176708 (Clytia hemisphaerica)
GTGGTTGTTCAGGATAGTGTCTTGTGATGAAAGGGCGGTGGCGTGGTTGT
TCAGAGCAGTGTCCAGTGAGGATATGGTTTTGTCCTGTTTTGAAATCACT
TGACTTTGAGCCAGAATGTCCTTTGtaatttgaatatgatttacGCTAAC
GTTTGCGAGTTCGTTCAGAATCTTTTTCGAGAAAAAGGACAGCGACTGGA
CTACTAGATTATTTGTAACGTCAAGCGGTCTGGTTCTCAAGGCGTTCATA
TTATAAGTTGTAAAACCTAAACCAATGACAATCTTTTCTCCTTCGTTCCA
TCTCAAGTTAAATTCATTCAAATCAATACTTTTAGCGTCAGCATGTAAAA
GACGGTTTCGCCAATCACGAGCAAGAATGACATATGCTGAATGACTGGAA
TCACCAGCTGCtatttttttattccaaccaTTTTTAGGCGGTGGCAATGT
TGTAAAATTGATAATCAAAACGATTATGAGAGTTATATCAAACGTCTGGC
TGTCTGTTTGATTTGAATTCGGGGGAAGTAAAGTGTCAACTTGGTCTTTC
TTTAAAACCCCTTTCTTTGCTAACTGGTTAATATTGATCTGTTGTTTTCG
GAGTTCAGCGTTGAGAGCTGCTGGGTTCCTCGGCAGACCAACATAATTGT
GATTATAATCATTATGCAAAAGAGCGAGCAGTGATTCTTTTAAAGGCTCG
TTAAGCAAAGTAGCCAATCTCAGccagttttcaatttcttgaatggCTTG
AGCTACAGTAACGTAGGATGACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012867XLOC_012867Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022889-exon-sc0000435-1491911889:175890..176708TCONS_00022889-exon-sc0000435-1491911889:175890..176708Clytia hemisphaericaexon
TCONS_00022889-exon-sc0000435-1510915933:175890..176708TCONS_00022889-exon-sc0000435-1510915933:175890..176708Clytia hemisphaericaexon
TCONS_00022889-exon-sc0000435-1575043694:175890..176708TCONS_00022889-exon-sc0000435-1575043694:175890..176708Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022889-proteinTCONS_00022889-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000435supercontigsc0000435:175890..176708 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11632	0.170146	0.432542	0.128852	0.235297	0.276845	1.97549	2.27634	0.863433	1.82587	1.9255	0.601552	2.87103	2.30601	4.2019	5.43956	2.42629	1.81288	1.5652	1.74679	0.81044	1.02179	0.784458	0.872053	1.20044	1.72401	0.328143	0.255332	1.88409	2.3963
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022889 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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