TCONS_00022924 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022924
Unique NameTCONS_00022924
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length730

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022924 ID=TCONS_00022924|Name=TCONS_00022924|organism=Clytia hemisphaerica|type=transcript|length=730bp
ttttaaaggtAATGGAAGCAATATTATTTTTATCGCGAAGTATttacaaa
aagttatttttacaATAAAATGTGTTTCGAATAATTTACCcataaaaaaa
agagaaatttccACTAGTCAGCCGTCAATCTAAAACCATCTCTACCGAAG
AACGGATAAACTTTCTTTGCCTTTTTGCCGTTGTTAGTTTGTTATGCTCg
ataaaaacaaataattcTGATAATGAAATGCGCCAGGAAAGTTTTCCAGA
AAACAAGAACAGTCAGGCGTTCTACGGtattttaccaatattttacaATG
AGAGATGTTCACGCTTTTCGAGATCGTACATACTTCGTAATCAAGCCTCA
GTCAGATCATCATTGAAATATAGGTGAAGAGCTGGCAAATACTGCTCTTC
ATCCATTcccaaaacataaaaatcttcACTTTCATCTTTTACATTGTTTT
CTTGTAAAGTTCTTTCCATGTTCAAATTTTGTCCATTGAATTTCCAAGTG
TAACTACCAGCATGCTTGTTGTAGTGAAAATAACGGTTCTGGATTTCTCG
CATATTCTCTTCCGAGCAAACCTgtaaaagatgaaaaagttggtcttctg
ttaagaattttcttgaaaaaaaagacGTTTAATGATATAAAAAAAAGAGG
CGCATAACTTATGCTGAAAAAGCAGAATCAACAAAACAATTATTTCATCT
TTCTGCAAGATGCAGAAACGttctttttca
Run BLAST on NCBI

transcript from alignment at sc0000436:245550..246334-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022924 ID=TCONS_00022924|Name=TCONS_00022924|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0000436:245550..246334- (Clytia hemisphaerica)
TTTTAAAGGTAATGGAAGCAATATTATTTTTATCGCGAAGTATTTACAAA
AAGTTATTTTTACAATAAAATGTGTTTCGAATAATTTACCCATAAAAAAA
AGAGAAATTTCCACTAGTCAGCCGTCAATCTAAAACCATCTCTACCGAAG
AACGGATAAACTTTCTTTGCCTTTTTGCCGTTGTTAGTTTGTTATGCTCG
ATAAAAACAAATAATTCTGATAATGAAATGCGCCAGGAAAGTTTTCCAGA
AAACAAGAACAGTCAGGCGTNCTGATAATGAAATGCGCCAGGAAAGTTTT
CCAGAAAACAAGAACAGTCAGGCGTTCTACGGTATTTTACCAATATTTTA
CAATGAGAGATGTTCACGCTTTTCGAGATCGTACATACTTCGTAATCAAG
CCTCAGTCAGATCATCATTGAAATATAGGTGAAGAGCTGGCAAATACTGC
TCTTCATCCATTCCCAAAACATAAAAATCTTCACTTTCATCTTTTACATT
GTTTTCTTGTAAAGTTCTTTCCATGTTCAAATTTTGTCCATTGAATTTCC
AAGTGTAACTACCAGCATGCTTGTTGTAGTGAAAATAACGGTTCTGGATT
TCTCGCATATTCTCTTCCGAGCAAACCTGTAAAAGATGAAAAAGTTGGTC
TTCTGTTAAGAATTTTCTTGAAAAAAAAGACGTTTAATGATATAAAAAAA
AGAGGCGCATAACTTATGCTGAAAAAGCAGAATCAACAAAACAATTATTT
CATCTTTCTGCAAGATGCAGAAACGTTCTTTTTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012886XLOC_012886Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022924-exon-sc0000436-1575043694:246069..246334TCONS_00022924-exon-sc0000436-1575043694:246069..246334Clytia hemisphaericaexon
TCONS_00022924-exon-sc0000436-1575043694:245550..246013TCONS_00022924-exon-sc0000436-1575043694:245550..246013Clytia hemisphaericaexon
TCONS_00022924-exon-sc0000436-1510915933:246069..246334TCONS_00022924-exon-sc0000436-1510915933:246069..246334Clytia hemisphaericaexon
TCONS_00022924-exon-sc0000436-1510915933:245550..246013TCONS_00022924-exon-sc0000436-1510915933:245550..246013Clytia hemisphaericaexon
TCONS_00022924-exon-sc0000436-1491911889:246069..246334TCONS_00022924-exon-sc0000436-1491911889:246069..246334Clytia hemisphaericaexon
TCONS_00022924-exon-sc0000436-1491911889:245550..246013TCONS_00022924-exon-sc0000436-1491911889:245550..246013Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:245550..246334 -
Expression

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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.83009	2.4253	3.32785	3.99274	0	0	0	0	0	0	0	0	0	0	0	0	0	2.05737e-07	0	0	0	7.49309	0	0	0	0
Blast
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BLAST of TCONS_00022924 vs. Swiss-Prot (Human)
Match: CB5D1 (Cytochrome b5 domain-containing protein 1 OS=Homo sapiens GN=CYB5D1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 5.158e-22
Identity = 44/79 (55.70%), Postives = 57/79 (72.15%), Query Frame = -1 
Query:  347 HLLQVCSEENMREIQNRYFHYNKHAGSYTWKFNGQNLNMERTLQENNVKDESEDFYVLGMDEEQYLPALHLYFNDDLTE 583
            H L+V   E++ EI +RY  YN HA SYTWK+ G+NLNM+ TL+EN ++DE E+F  L MD   + PA+ LYFNDDLTE
Sbjct:  149 HTLEVGVLESIWEILHRYLPYNSHAASYTWKYEGKNLNMDFTLEENGIRDEEEEFDYLSMDGTLHTPAILLYFNDDLTE 227
The following BLAST results are available for this feature:
BLAST of TCONS_00022924 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CB5D15.158e-2255.70Cytochrome b5 domain-containing protein 1 OS=Homo ... [more]
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