TCONS_00022934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022934
Unique NameTCONS_00022934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length300

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022934 ID=TCONS_00022934|Name=TCONS_00022934|organism=Clytia hemisphaerica|type=transcript|length=300bp
ggaaaatacccttgggaaactgactttgatttcatccacattcgaaattc
aatgttaaaaaattacaccccaaaaccatccccattggatatttttaacc
ttgaaacaatagaatatcTATCCCAATTGGAATATTGGCTTCTTCTTAAT
GTATCTTGCCTATTAGATTAGGGAAGTGCTAGAACCTGTATCTTGTAAGT
GTGGAAGTCATTTGATTGAAAGCAAAGCTGTATGCTGTTTCCAAAACATG
CGTTGCACATGCCTAAAGAATCAGGTGGAATGTTCTTTAAAGTGTAGATG
Run BLAST on NCBI

transcript from alignment at sc0000436:3833..4132

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022934 ID=TCONS_00022934|Name=TCONS_00022934|organism=Clytia hemisphaerica|type=transcript|length=300bp|location=Sequence derived from alignment at sc0000436:3833..4132 (Clytia hemisphaerica)
CATCTACACTTTAAAGAACATTCCACCTGATTCTTTAGGCATGTGCAACG
CATGTTTTGGAAACAGCATACAGCTTTGCTTTCAATCAAATGACTTCCAC
ACTTACAAGATACAGGTTCTAGCACTTCCCTAATCTAATAGGCAAGATAC
ATTAAGAAGAAGCCAATATTCCAATTGGGATAgatattctattgtttcaa
ggttaaaaatatccaatggggatggttttggggtgtaattttttaacatt
gaatttcgaatgtggatgaaatcaaagtcagtttcccaagggtattttcc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012889XLOC_012889Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022934-exon-sc0000436-1491911889:3833..4132TCONS_00022934-exon-sc0000436-1491911889:3833..4132Clytia hemisphaericaexon
TCONS_00022934-exon-sc0000436-1510915933:3833..4132TCONS_00022934-exon-sc0000436-1510915933:3833..4132Clytia hemisphaericaexon
TCONS_00022934-exon-sc0000436-1575043694:3833..4132TCONS_00022934-exon-sc0000436-1575043694:3833..4132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000436supercontigsc0000436:3833..4132 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.15015	2.90417	4.0043	2.81158	0.328076	0	2.76106	0.259287	0.258927	0.268898	0.442142	0.474486	0.292264	0.299561	0	0	0.752841	1.10163	0	0	5.016	0.74611	0.53384	0	1.72848	0.880522
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00022934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top