TCONS_00022943 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00022943
Unique Name	TCONS_00022943
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1365

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000437:13489..18118+
coding sequence from alignment at sc0000437:13489..18118+

transcript sequence

>TCONS_00022943 ID=TCONS_00022943|Name=TCONS_00022943|organism=Clytia hemisphaerica|type=transcript|length=1365bp
GAAAGTGTCGCTGAAAGCGAAAGTGTCGCTGAATGTGTCGCTGAATGTGT
CGCTGAATGTGTCGCTAACTTGACTTTGGTCCTTTTTTTCTGTCTGTCTT
TGACCAGGTCATCATCAGACCAAGACTAGCAGCTGTTCGAGGGAAATGAG
TGATCAGACCAGAGCAAAGCAGAAAGATGATGAGATAGATTATTTCAGAG
ATACTCCAATAAGATACTTAGGTTATGCCAACGAGGTTGGAGAAGCTTTT
AGACAATTTGTATCAAAAAGAGTTGTCGGTTTAAGTTATGCTGTAGCTTC
ATTCTATTGCTTATCTGATGCAACAAGCAAAGCATATCTCGTCAAAACGG
ACACAGAACTTTACCATGAGAATGGACACCTCTATGCAAATCGAAAagca
gcagagattttcattgaAGCAGCATTATGgcaagGTTTGGCGTCAGTTAT
GATCCCTGGGTTTACAATTAATCGAATATGTTGGGCATCTGCTATCGTTT
TGAGGAAATTTTCGAGTACAATGATTTCACATGGTACACAGAAAGCATTA
GTGACGACTATTGGGTTGGGTTCAATTCCTGTCATTATAAAGCCTATTGA
CAGTTTGGTTGACAAGTTGATGGAAGAAGGAGTTGAACTTTCAAAAAGAC
TGGGTATTAAACATGAAATATCACATGTACACAATGAAGAATTTCATATT
ACGTTGGATAAAGAATCGTATCACCACCACGAAAAATGAGTTTAATACCT
GTTATAGTAGGTCAAATGAAGAAAGACAAAGTACCAAGCATACCTACTTC
TGAGCGTAAGTCAGGACATCACTCTAAGTGTGTGTAGAGAAAACATAACA
GTCGTAGAGAAACTTAAAGTTTGTTGCATCAAGAAACTTAAAGTTCCTTG
GTTACATGTACTATAaaaatatatctttattttaatTACGCAATTatgta
cctaaacaatggctctattgtttaaaaacaaCAGAATGCTAATCATAATG
CGAGCCTATCAACCTATTAATCTATTAACAGCTATTCGCAATATTGTCAA
CTTGTGTGGGGATTGGTAAAGAAGTTTTGTGAAGGCATTTCTTAAGTTCC
CTAAAAGACTGAGTACTCATTATGCCAGCCCCCTCAAAAATTGCCAAGGG
TTAGGATAGATACTTATTGAACAATCGGTATctaaataacttcgtcatat
tCAGTTTCTATTTAATAGATAGATTTAACTTTTATATATTTCAGATTTCA
GATGATATTTTTGTACCATTGTAAATGGTTTATTACGTAtattaaattta
atattttactATATATTCAAAGAAAGAAGGATAAACTTAATTATACCGAA
TAGAATTTATGGATT

Run BLAST on NCBI

protein sequence of TCONS_00022943-protein

>TCONS_00022943-protein ID=TCONS_00022943-protein|Name=TCONS_00022943-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
MSDQTRAKQKDDEIDYFRDTPIRYLGYANEVGEAFRQFVSKRVVGLSYAV
ASFYCLSDATSKAYLVKTDTELYHENGHLYANRKAAEIFIEAALWQGLAS
VMIPGFTINRICWASAIVLRKFSSTMISHGTQKALVTTIGLGSIPVIIKP
IDSLVDKLMEEGVELSKRLGIKHEISHVHNEEFHITLDKESYHHHEK

Run BLAST on NCBI

transcript from alignment at sc0000437:13489..18118+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00022943 ID=TCONS_00022943|Name=TCONS_00022943|organism=Clytia hemisphaerica|type=transcript|length=4630bp|location=Sequence derived from alignment at sc0000437:13489..18118+ (Clytia hemisphaerica)
GAAAGTGTCGCTGAAAGCGAAAGTGTCGCTGAATGTGTCGCTGAATGTGT
CGCTGAATGTGTCGCTAACTTGACTTTGGTCCTTTTTTTCTGTCTGTCTT
TGACCAGGTCATCATCAGACCAAGACTAGCAGCTGTTCGAGGGAAATGAG
TGATCAGACCAGAGCAAAGCAGAAAGATGATGAGATAGATTATTTCAGAG
ATACTCCAATAAGATACTTAGGTATACTGTTTTTCCAATAATGATCTGAT
GgtatcttttttaatttttgtttttttgtgtgtGCAGTGCAGTTAGTTGT
TGGTGGTATAACAGCCCTTGgtcaaaccaaattttttaatttggactttg
tacctaATGCTGCACACAAGCACTTTAGCTAAAGTCCCGGAAAAGCAGGA
GAAAAATCAGCAGTAacaacttttgtatttttcctgttttggaataaaag
acaaaagttccagaaatgaaaataaaggcaGGGATattgacaaaaatcaa
aatgattgacaggttgaaaattttttcccccATTAGGGAGTTTGCAAGTG
TTCTGCGTAGTTCTGCGGCTGTTCTGCGTATTTCTACTGGGATggttttt
ttcaactttcctTGCTAAATCCTCAAACCCTGCAAAATAGTTTTTGGGAG
AACGTGGCGGTCAACCTGTCAACCGGTCTATTCAATAACAAAATACTCCA
GCCAGTACAAACGGGATAAACTGTTTTGTAGGTACCTTGGTAACAGCTAT
GTAGTAAAAGCGTATAAATTTCTGGGAagtttaaattaaattaaattaaa
ttgccTGGAATCTAAAATTTTGCTAGCACCTGAAATTATATTCATAATTT
ATTTGAGATATTTACTTCCAACAGGATGTTTCAGTATTAACTCCCCCTAA
AGACCAGTGCAAATTAACTGAAATAAcacaaaaatgttttattttactTT
CCAAACAGGTTATGCCAACGAGGTTGGAGAAGCTTTTAGACAATTTGTAT
CAAAAAGAGTTGTCGGTTTAAGTTATGCTGTAGCTTCATTCTATTGCTTA
TCTGATGCAACAAGCAAAGCATATCTCGTCAAAACGGTATGAAAATATTC
TTTGCTATtgtgttgaatttttttaattttagtgcagaataattgaaata
ataaataatgCAGCATGCAGAAATCTCATTTTTTTAAGGCTTGGTAGAAA
TTGGGATTAAGCACATGCTTCTATTATAGTTACAGAGGcattcaattatt
tttattgGGAGTCTTTTTGAAAAGGATACAGTAGACCTCCAGTTATTCAA
AGCTCCAAGGGGgataatttttaagaatttactTCAAATAGCCAGGAGtt
cgaattgaaaaattgtttttccacCAGATTTTCAATTGAACTTTAATTCC
CCAAGGGGAATAGAAATCGCTTTGAATAACTGAAGTTCGAATAACTGGGG
AGTGTTTTAACCTGGGTTGGGTGCAGCAGATCCAAGGGGAAAGCCATCTC
ACTTCGAATAACATAATAATAGGGAGTCTAAATGTAGATAGAACAAGAAG
GGAATAAGCAAACAAGACAGACCTTTAaagataaaagtaaaaattttgta
TATAAAGGATTTCTAGTTTTTTTGTATTCGCATAAGACATTAGCGAGCAC
CTCGCCAAAAAACGACTCCACTCCACtttaacaatttttgaaaaatagaa
gtgTATttacgcaaattcgatttttttgctaCTGCAAGAGCTCCGAAAGT
GTAGTGACGTCCTGGACTCAATAACACTTAACAGAGGCATACCTCAGTAC
AATAGGcctttttatgacaaaaaatgatttaccaacctaaaatttaaata
atatttCGACAGAATGATAatataaaactatttttttctcttGTATATGA
AGGACACAGAACTTTACCATGAGAATGGACACCTCTATGCAAATCGAAAa
gcagcagagattttcattgaAGCAGCATTATGgcaaggtttgttatattt
ctAATATTCGTATTCAGGTAAAAGATTTACCCAGCATGCAATTATATCAT
GAACAGCGAATTCGCTATATGTAGGCCCGTCATTTGGAAATGGCTTGATC
TGCGAGTTCTAGAAATATTGTCAGAATATGTTGCCATTTCTGGGTATTTC
AgcgttttgcagaatttaataACTACATAGCTGTTGGATCCTCATAACCT
AAGCTCTTTAAGTTTTACGCctcatgtaaaaaatcagagttaaaattcta
ctttccaACCCTAAGTCATTTTCttcaaaactcgaaaaattatgaGACAC
AATGCTTTTAATTTATACATAAGATCATTTTTGAGACTGATGATGAAAGA
ATAACCTCGAATCAAATTTCTTACTTTCTTTGGAATAGGTTTGGCGTCAG
TTATGATCCCTGGGTTTACAATTAATCGAATATGTTGGGCATCTGCTATC
GTTTTGAGGAAATTTTCGAGTACAATGATTTCACATGGTACACAGAAAGC
ATTAGTGACGACTATTGGGTTGGGTTCAATTCCTGTCATTATAAAGCCTA
TTGACAGGTAAGATTATCATTTTGACTTTCCttttaacttttaactttta
atcCGGCAcgctttctttttataagaatatcttctataagaatatcaggg
taNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAATTTTGGCagtttc
ttaagaatacttaaCCCTCGTCTAAagtacaccattcttataaaaaaagc
gtgtaattgaAGTaccgattgacgtcaaatgagctaggtaaagctcaaat
tgcagatgtagaacgataaactcggtatacattCACTCACCATCTGGATA
AGGCTATTACTGTGTCGTactaacattctgccgattggtagtgtgaagga
ttcgatcacagacttgcactgtaatggactgtgttcgaatcccactgCCA
GGCAGgctgttagggaaatatggtatACCTTCACTCGTATAACCTTTTTC
TGTTCGGTAGAGAATActaaattttcacaccttgagcataaTGACAtatc
tgacagtaaggtgtcataaaaattgacacttttccaatacaaatttatgt
tTGATGTCAATTATATCGTTTAAAACCGtgatttattgaatatttaggat
aaaataatatttttaaaccaatggaactttttttctaaagcctttgtttg
TATACAATCAGATACAATATCTCTTTGgaagatcaaagaaattttcgatt
tttgctcACTTTAGGCATGATTTAAGAAAATAAAGGCTGGTACATGAAAC
CCCTCgtcaatttcaattttacaagctttttcgcatTTAACTGacacaaa
tgtggagcaagattggtcagaaagaagtaaagaaaaacatattttttgct
tattcagCACGAAATCGaacataatataataatatgaGATAGCGGCCTGA
TataaatatgtgtctgatatgaaacgggaacacttatgtaaataTAAAAC
CTTTTTTAACCCTACTGGCGTGTATTTCCTGTcagttaaatatatttttt
ttaaactttcgaTTATAGTTTGGTTGACAAGTTGATGGAAGAAGGAGTTG
AACTTTCAAAAAGACTGGGTATTAAACATGAAATATCACATGTACACAAT
GAAGAATTTCATATTACGTTGGATAAAGAATCGTATCACCACCACGAAAA
ATGAGTTTAATACCTGTTATAGTAGGTCAAATGAAGAAAGACAAAGTACC
AAGCATACCTACTTCTGAGCGTAAGTCAGGACATCACTCTAAGTGTGTGT
AGAGAAAACATAACAGTCGTAGAGAAACTTAAAGTTTGTTGCATCAAGAA
ACTTAAAGTTCCTTGGTTACATGTACTATAaaaatatatctttattttaa
tTACGCAATTatgtacctaaacaatggctctattgtttaaaaacaaCAGA
ATGCTAATCATAATGCGAGCCTATCAACCTATTAATCTATTAACAGCTAT
TCGCAATATTGTCAACTTGTGTGGGGATTGGTAAAGAAGTTTTGTGAAGG
CATTTCTTAAGTTCCCTAAAAGACTGAGTACTCATTATGCCAGCCCCCTC
AAAAATTGCCAAGGGTTAGGATAGATACTTATTGAACAATCGGTATctaa
ataacttcgtcatattCAGTTTCTATTTAATAGATAGATTTAACTTTTAT
ATATTTCAGATTTCAGATGATATTTTTGTACCATTGTAAATGGTTTATTA
CGTAtattaaatttaatattttactATATATTCAAAGAAAGAAGGATAAA
CTTAATTATACCGAATAGAATTTATGGATT

Coding sequence (CDS) from alignment at sc0000437:13489..18118+

>TCONS_00022943 ID=TCONS_00022943|Name=TCONS_00022943|organism=Clytia hemisphaerica|type=CDS|length=2970bp|location=Sequence derived from alignment at sc0000437:13489..18118+ (Clytia hemisphaerica)
ATGAGTGATCAGACCAGAGCAAAGCAGAAAGATGATGAGATAGATTATTT
CAGAGATACTCCAATAAGATACTTAGGTTATGCCAACGAGGTTGGAGAAG
CTTTTAGACAATTTGTATCAAAAAGAGTTGTCGGTTTAAGTTATGCTGTA
GCTTCATTCTATTGCTTATCTGATGCAACAAGCAAAGCATATCTCGTCAA
AACGGACACAGAACTTTACCATGAGAATGGACACCTCTATGCAAATCGAA
AagcagcagagattttcattgaAGCAGCATTATGgcaagGTTTGGCGTCA
GTTATGATCCCTGGGTTTACAATTAATCGAATATGTTGGGCATCTGCTAT
CGTTTTGAGGAAATTTTCGAGTACAATGATTTCACATGGTACACAGAAAG
CATTAGTGACGACTATTGGGTTGGGTTCAATTCCTGTCATTATAAAGCCT
ATTGACAGTTTGGTTGACAAGTTGATGGAAGAAGGAGTTGAACTTTCAAA
AAGACTGGGTATTAAACATGAAATATCACATGTACACAATGAAGAATTTC
ATATTACGTTGGATAAAGAATCGTATCACCACCACGAAAAATGAATGAGT
GATCAGACCAGAGCAAAGCAGAAAGATGATGAGATAGATTATTTCAGAGA
TACTCCAATAAGATACTTAGGTTATGCCAACGAGGTTGGAGAAGCTTTTA
GACAATTTGTATCAAAAAGAGTTGTCGGTTTAAGTTATGCTGTAGCTTCA
TTCTATTGCTTATCTGATGCAACAAGCAAAGCATATCTCGTCAAAACGGA
CACAGAACTTTACCATGAGAATGGACACCTCTATGCAAATCGAAAagcag
cagagattttcattgaAGCAGCATTATGgcaagGTTTGGCGTCAGTTATG
ATCCCTGGGTTTACAATTAATCGAATATGTTGGGCATCTGCTATCGTTTT
GAGGAAATTTTCGAGTACAATGATTTCACATGGTACACAGAAAGCATTAG
TGACGACTATTGGGTTGGGTTCAATTCCTGTCATTATAAAGCCTATTGAC
AGTTTGGTTGACAAGTTGATGGAAGAAGGAGTTGAACTTTCAAAAAGACT
GGGTATTAAACATGAAATATCACATGTACACAATGAAGAATTTCATATTA
CGTTGGATAAAGAATCGTATCACCACCACGAAAAATGAATGAGTGATCAG
ACCAGAGCAAAGCAGAAAGATGATGAGATAGATTATTTCAGAGATACTCC
AATAAGATACTTAGGTTATGCCAACGAGGTTGGAGAAGCTTTTAGACAAT
TTGTATCAAAAAGAGTTGTCGGTTTAAGTTATGCTGTAGCTTCATTCTAT
TGCTTATCTGATGCAACAAGCAAAGCATATCTCGTCAAAACGGACACAGA
ACTTTACCATGAGAATGGACACCTCTATGCAAATCGAAAagcagcagaga
ttttcattgaAGCAGCATTATGgcaagGTTTGGCGTCAGTTATGATCCCT
GGGTTTACAATTAATCGAATATGTTGGGCATCTGCTATCGTTTTGAGGAA
ATTTTCGAGTACAATGATTTCACATGGTACACAGAAAGCATTAGTGACGA
CTATTGGGTTGGGTTCAATTCCTGTCATTATAAAGCCTATTGACAGTTTG
GTTGACAAGTTGATGGAAGAAGGAGTTGAACTTTCAAAAAGACTGGGTAT
TAAACATGAAATATCACATGTACACAATGAAGAATTTCATATTACGTTGG
ATAAAGAATCGTATCACCACCACGAAAAATGAATGAGTGATCAGACCAGA
GCAAAGCAGAAAGATGATGAGATAGATTATTTCAGAGATACTCCAATAAG
ATACTTAGGTTATGCCAACGAGGTTGGAGAAGCTTTTAGACAATTTGTAT
CAAAAAGAGTTGTCGGTTTAAGTTATGCTGTAGCTTCATTCTATTGCTTA
TCTGATGCAACAAGCAAAGCATATCTCGTCAAAACGGACACAGAACTTTA
CCATGAGAATGGACACCTCTATGCAAATCGAAAagcagcagagattttca
ttgaAGCAGCATTATGgcaagGTTTGGCGTCAGTTATGATCCCTGGGTTT
ACAATTAATCGAATATGTTGGGCATCTGCTATCGTTTTGAGGAAATTTTC
GAGTACAATGATTTCACATGGTACACAGAAAGCATTAGTGACGACTATTG
GGTTGGGTTCAATTCCTGTCATTATAAAGCCTATTGACAGTTTGGTTGAC
AAGTTGATGGAAGAAGGAGTTGAACTTTCAAAAAGACTGGGTATTAAACA
TGAAATATCACATGTACACAATGAAGAATTTCATATTACGTTGGATAAAG
AATCGTATCACCACCACGAAAAATGAATGAGTGATCAGACCAGAGCAAAG
CAGAAAGATGATGAGATAGATTATTTCAGAGATACTCCAATAAGATACTT
AGGTTATGCCAACGAGGTTGGAGAAGCTTTTAGACAATTTGTATCAAAAA
GAGTTGTCGGTTTAAGTTATGCTGTAGCTTCATTCTATTGCTTATCTGAT
GCAACAAGCAAAGCATATCTCGTCAAAACGGACACAGAACTTTACCATGA
GAATGGACACCTCTATGCAAATCGAAAagcagcagagattttcattgaAG
CAGCATTATGgcaagGTTTGGCGTCAGTTATGATCCCTGGGTTTACAATT
AATCGAATATGTTGGGCATCTGCTATCGTTTTGAGGAAATTTTCGAGTAC
AATGATTTCACATGGTACACAGAAAGCATTAGTGACGACTATTGGGTTGG
GTTCAATTCCTGTCATTATAAAGCCTATTGACAGTTTGGTTGACAAGTTG
ATGGAAGAAGGAGTTGAACTTTCAAAAAGACTGGGTATTAAACATGAAAT
ATCACATGTACACAATGAAGAATTTCATATTACGTTGGATAAAGAATCGT
ATCACCACCACGAAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_012898	XLOC_012898	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00022943-protein	TCONS_00022943-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000437	supercontig	sc0000437:13489..18118 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.24801	4.36944	1.07722	0.785286	3.06266	2.38745	6.58931	7.16619	8.24996	8.48906	11.8776	6.72457	7.69495	6.48629	9.82874	9.70617	17.4174	18.608	10.7986	12.529	18.6643	17.0642	26.2859	25.8172	22.5382	23.3202	21.5882	20.7939	20.0975	17.6651

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR019560	Mitochondrial_18_kDa_protein_

Blast

[Close]

BLAST of TCONS_00022943 vs. Swiss-Prot (Human)
Match: MTFP1 (Mitochondrial fission process protein 1 OS=Homo sapiens GN=MTFP1 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.921e-31
Identity = 71/161 (44.10%), Postives = 91/161 (56.52%), Query Frame = 2

Query:  155 QTRAKQKDDEIDYFRDTPIRYLGYANEVGEAFRQFVSKRVVGLSYAVASFYCLSDATSKAYLVKTDTELYHENGHLYANRKAAEIFIEAALWQGLASVMIPGFTINRICWASAIVLRKFSSTMISHGTQKALVTTIGLGSIPVIIKPIDSLVDKLMEEGVE 637
             +  + +  E D +RDT +RYLGYANEVGEAFR  V   VV LSY VAS Y L+DA  K    K   E+        A    A   ++  +WQ LASV IPGFTINR+C AS  VL   ++T      +K   T +GL +IP+II PID  VD L++  + 
Sbjct:    1 MSEPQPRGAERDLYRDTWVRYLGYANEVGEAFRSLVPAAVVWLSYGVASSYVLADAIDKG---KKAGEVPSPEAGRSARVTVA--VVDTFVWQALASVAIPGFTINRVCAASLYVLG--TATRWPLAVRKWTTTALGLLTIPIIIHPIDRSVDFLLDSSLR 154

The following BLAST results are available for this feature:

BLAST of TCONS_00022943 vs. Swiss-Prot (Human)

BLAST of TCONS_00022943 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MTFP1	6.921e-31	44.10	Mitochondrial fission process protein 1 OS=Homo sa...	[more]

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TCONS_00022943 (transcript) - C. hemisphaerica