TCONS_00022955 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022955
Unique NameTCONS_00022955
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length472

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022955 ID=TCONS_00022955|Name=TCONS_00022955|organism=Clytia hemisphaerica|type=transcript|length=472bp
actgaacttttttcttcatccAGTCACTGTTACGATTACAATCCAGCCAT
TCAACCACGTTGCAATGTTGTGTTGGGAGTGATCAGTAAAGAAAGCAAAG
AAGATGATATCAACAGGGCACTTGATGTTTTGACTAAGGCAACTGGTGTT
TATCAAGATTTCAATTTAGCGGAAGCCACGCTGATGTGCTTGGCCAAATA
TCAAGCTCTCCTTAAAAAGgattcaagTTTTCACAAGATATTGTTTTGGG
TTGCAGTCAGCGTTCTACAGTTTGGTGAACAAAGTCTTTATCCAGCAGCT
CTTTGTCTTCTTGAACAGAATCTTTATGTCTCCCAAGAAAACAATTTGTA
CACTGTCCATACTTTACAATCATCTCTCTTGGAATATCGAAATGACATCG
CATACCATTGGATTTTTAAACAACTTGATCATATTTGTGGATTGAGCTTC
TCTTCCTCCTTCGACTTCGCAC
Run BLAST on NCBI

protein sequence of TCONS_00022955-protein

>TCONS_00022955-protein ID=TCONS_00022955-protein|Name=TCONS_00022955-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
TELFSSSSHCYDYNPAIQPRCNVVLGVISKESKEDDINRALDVLTKATGV
YQDFNLAEATLMCLAKYQALLKKDSSFHKILFWVAVSVLQFGEQSLYPAA
LCLLEQNLYVSQENNLYTVHTLQSSLLEYRNDIAYHWIFKQLDHICGLSF
SSSFDFA
Run BLAST on NCBI

transcript from alignment at sc0000437:40308..46632-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022955 ID=TCONS_00022955|Name=TCONS_00022955|organism=Clytia hemisphaerica|type=transcript|length=6325bp|location=Sequence derived from alignment at sc0000437:40308..46632- (Clytia hemisphaerica)
ACTGAACTTTTTTCTTCATCCAGTCACTGTTACGATTACAATCCAGCCAT
TCAACCACGTTGCAATGTTGTGTTGGGAGTGATCAGTAAAGAAAGCAAAG
AAGATGATATCAACAGGGCACTTGATGTTTTGACTAAGGTAAAAATAACA
TGGTGACCTAATCGTTTTTTGGTAAAGGGGTATATATCTTAAGGAGTGAT
CAGATGGTTTGAGGTATTTGTCATGCAGATTCCTTTATTGGGCCATTCCA
TTTTACATCCATACAGGGGGGGTGGGGTGGACGAACATTTCCAGAGGGTA
ATCTGAGAAAAATTTCCAGGGGGCGTTTTTCATTTGTTTTCATTTTCAAG
GGATTAAAAGGTTGTTCTAAAATTCAGTGAAAGACTGATTTTAGTTCGTC
CATCCTCACTTTAAGGGACGAGAAGAATTTTTTTAAGGGTATTCTTGCAA
ATTTTGCCATTTTCCAGGGGGTATCTACACATTTTCAATATTTTTTTGTG
ACTTGAAAACACGAACTAATTTGACGTTACCTTACTTCAATGCAAGGCAT
ATTACAGTTTTGTTATCGGCGCACGGCATTTTTAGGCTGCCTATAAAGTG
TTCCTAAAAGCTGACCGCGCCGCTAAGGGTTGATAAATGTACTGGAATTT
ACTTGGTTTTAAAAAGGAAGTGCGTAATCAAATAACCAAACACATATATC
CAACAATAATGGACTTTGATTTTCTAGGCAACTGGTGTTTATCAAGATTT
CAATTTAGCGGAAGCCACGCTGATGTGCTTGGCCAAATATCAAGCTCTCC
TTAAAAAGGTAAGTTTTGTAAGGCTAGGGCTGAAAAAAGACTAAAAGAAC
ATGTCACAGAGCTAGTTATATCCTTTCCCCGCCTTAAGATTTGTACGAAA
ATTCCCGGTGCCCGGTGATAAAACTACCCTGAAGAATTTTCTCTCGATCG
CAATCGTGGCTGGACTTTTTAGCTGTGCACAATAGAATTTGAAATCCCCA
CACCCTAGCAAGAAGGGCTTACACGTTTTTATTATATGATTATCAAAAAC
TTTTTGCAGCCTTCGATATTCTTTGCTTTTCTAGTTTAAAGCCTATAAAG
CCTTAACATGTTCTTAAAATTTCACCATTTTGTGCAATTTTTTCAAAATT
GGATATTTTCGAGTACGCGAAGCCTGTTAAAGTGTTCTTAACTTGTTCTT
AATATTTTAGCTATTGAAGCCTTTTGTTCTTGTATAATTTATTTTCATAA
GAAAATGTGTCAATTTATCCCCACTGGCTAACAATTCTCAAGTGGTCACT
GAGACCGGGAGGTTACTACAGATCCTTGTTCTTTACCCATTGAAGTCAAA
GACCCGAAGAGACTAGATCCGAAACTTTTAAATTGGAAATTAAGCCACTT
ATTTCCCATCCATCCATAAAACGAAATTTCTAAATGCGGGGCAAACTTGA
GGATTTGCTCTTTCTTGCTTGAGAAAAGTTTAAGATTACTATCTACAATC
GGTGACGAAATACTTGGCACAAAAAGGAAATCCACCGGGGTGTTTTGAAA
CCACAATCGATTTGCAAGTGCTCTAAAGTAGGTTCGAAGGGCAGAGTTTT
AACTTAACTTAAAACTTAGGACCTTAGGATCTGAGGATCTTAGGATCTGA
GGATCCAAAAGCTCAAAAATGGTCCAGTAGGGCTTGAAATATAGCCTAGA
AACCAATAAATCCCTCCCAGATCGAAATAATCGTTGAANNNNNNNNNNNN
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NNNNNTGAAATCAAGTTGAAGGCCCGAAATTGACATTCTCGCTCGAACTT
CAATTTTCGAAAAATGGTAAATTAGCCAAAAGTGCCAATATGTTATGGCA
CTGATTGTAGACCCGAAGGGGCTTCAAACTCAATGCCCCAGCAAGCCAAT
GCCCATGCCAAGCAATCCGTTCAAATATTTTTACACAAAATCCATGTATT
AGATATTCTACCTCCCCCTTATATTTCCTTCCTTTTTTAGGATTCAAGTT
TTCACAAGATATTGTTTTGGGTTGCAGTCAGCGTTCTACAGGTTCGCATC
CCTTTGCTTCTTTTTATAAGAACCACTGAATTTTTTGTCGAGGCTCGGCC
TTTGTATCAAATTGTCCTTAACCTAAATTAAGATATTTTTGACTTTGTAC
CTAATTTTTACTTACTGACCCTTAATTTGCTTGAAGATTCAGTTGCTCTA
GAGTCTGCTGTTCTAAAGTTATTTTTAAATTGTTCTTATTTGTTGACGTT
TTGGAGCCTTATTGTTCTCATAAAAGAAGCAGCCCACTCTGAATCTCACA
ATCCATTTGAATGTGCCTTTAGACTTTTCAAAAATTGGTGAAAAAAATCA
AATACTGCAAGTAAAATTCTTTTCTTATGTTTTCAGTTTGGTGAACAAAG
TCTTTATCCAGCAGCTCTTTGTCTTCTTGAACAGAATCTTTATGTCTCCC
AAGAAAACAATTTGTACACTGTCCATGTAAGTTCAATTTGTCAACAGAAA
ACCTAGCCTGCCAGGGTCCCTCTGATTTTTTTAAGAGGGGATGCAAATTC
CAACAAATCACGTCCGCTTGGCCATTTTTTGGTTGTGTAAGTTTTTTGAG
CTGAGAATCATTATTAAGCAAAATTTTACCAAGAGGGAGTTGATTTTCGT
CAGCGAGTTAATGTATTATATAATAGTAGATATATTATATATGCAGTGTC
AAAAAGTTTCAGACGGATTCCGTCTCAGCAAAGTATACAAAGAGGTTTCT
CTTCCTGAAAATTTTGTACAACTAAACAAGAATCTGAGGAATATGTGCTC
ATCATCATCATCCTTCGACCGTTAGGTCGGAAATACCGAGTATCTCTCTT
TCCACAGCTCACGGTCTGACATAACTGTTTTCAGTTCTTCTAACTCGAGC
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AAAAATAAGTTTGTATGTACAGGTTGAAAAATACGGTTACTATTCACAGT
CAAAAGTCTTAGTCAAATGAATCTGACTGAACTTTTGAAGATTGGCTCTG
CAGGGCAAGGGCGCCAGACTTCCAGGAGGAAGTCATCCTTGGGGAAGACT
TAAGTGCTAATTTGCTGTGTAACATTCATTTTCTGTGCATCTCAGACAAA
AAACTTGCTTTGAGCACTGCTTATAATTTGTGGGAATTAATTACTTTGTT
TCACTTTCCGTAGACTTTACAATCATCTCTCTTGGAATATCGAAATGACA
TCGCATACCATTGGATTTTTAAACAACTTGATCATATTTGTGGATTGAGC
TTCTCTTCCTCCTTCGACTTCGCAC

Coding sequence (CDS) from alignment at sc0000437:40308..46632-

>TCONS_00022955 ID=TCONS_00022955|Name=TCONS_00022955|organism=Clytia hemisphaerica|type=CDS|length=2355bp|location=Sequence derived from alignment at sc0000437:40308..46632- (Clytia hemisphaerica)
ACTTTACAATCATCTCTCTTGGAATATCGAAATGACATCGCATACCATTG
GATTTTTAAACAACTTGATCATATTTGTGGATTGAGCTTCTCTTCCTCCT
TCGACTTCGCATTTGGTGAACAAAGTCTTTATCCAGCAGCTCTTTGTCTT
CTTGAACAGAATCTTTATGTCTCCCAAGAAAACAATTTGTACACTGTCCA
TGATTCAAGTTTTCACAAGATATTGTTTTGGGTTGCAGTCAGCGTTCTAC
AGGCAACTGGTGTTTATCAAGATTTCAATTTAGCGGAAGCCACGCTGATG
TGCTTGGCCAAATATCAAGCTCTCCTTAAAAAGACTGAACTTTTTTCTTC
ATCCAGTCACTGTTACGATTACAATCCAGCCATTCAACCACGTTGCAATG
TTGTGTTGGGAGTGATCAGTAAAGAAAGCAAAGAAGATGATATCAACAGG
GCACTTGATGTTTTGACTAAGACTTTACAATCATCTCTCTTGGAATATCG
AAATGACATCGCATACCATTGGATTTTTAAACAACTTGATCATATTTGTG
GATTGAGCTTCTCTTCCTCCTTCGACTTCGCATTTGGTGAACAAAGTCTT
TATCCAGCAGCTCTTTGTCTTCTTGAACAGAATCTTTATGTCTCCCAAGA
AAACAATTTGTACACTGTCCATGATTCAAGTTTTCACAAGATATTGTTTT
GGGTTGCAGTCAGCGTTCTACAGGCAACTGGTGTTTATCAAGATTTCAAT
TTAGCGGAAGCCACGCTGATGTGCTTGGCCAAATATCAAGCTCTCCTTAA
AAAGACTGAACTTTTTTCTTCATCCAGTCACTGTTACGATTACAATCCAG
CCATTCAACCACGTTGCAATGTTGTGTTGGGAGTGATCAGTAAAGAAAGC
AAAGAAGATGATATCAACAGGGCACTTGATGTTTTGACTAAGACTTTACA
ATCATCTCTCTTGGAATATCGAAATGACATCGCATACCATTGGATTTTTA
AACAACTTGATCATATTTGTGGATTGAGCTTCTCTTCCTCCTTCGACTTC
GCATTTGGTGAACAAAGTCTTTATCCAGCAGCTCTTTGTCTTCTTGAACA
GAATCTTTATGTCTCCCAAGAAAACAATTTGTACACTGTCCATGATTCAA
GTTTTCACAAGATATTGTTTTGGGTTGCAGTCAGCGTTCTACAGGCAACT
GGTGTTTATCAAGATTTCAATTTAGCGGAAGCCACGCTGATGTGCTTGGC
CAAATATCAAGCTCTCCTTAAAAAGACTGAACTTTTTTCTTCATCCAGTC
ACTGTTACGATTACAATCCAGCCATTCAACCACGTTGCAATGTTGTGTTG
GGAGTGATCAGTAAAGAAAGCAAAGAAGATGATATCAACAGGGCACTTGA
TGTTTTGACTAAGACTTTACAATCATCTCTCTTGGAATATCGAAATGACA
TCGCATACCATTGGATTTTTAAACAACTTGATCATATTTGTGGATTGAGC
TTCTCTTCCTCCTTCGACTTCGCATTTGGTGAACAAAGTCTTTATCCAGC
AGCTCTTTGTCTTCTTGAACAGAATCTTTATGTCTCCCAAGAAAACAATT
TGTACACTGTCCATGATTCAAGTTTTCACAAGATATTGTTTTGGGTTGCA
GTCAGCGTTCTACAGGCAACTGGTGTTTATCAAGATTTCAATTTAGCGGA
AGCCACGCTGATGTGCTTGGCCAAATATCAAGCTCTCCTTAAAAAGACTG
AACTTTTTTCTTCATCCAGTCACTGTTACGATTACAATCCAGCCATTCAA
CCACGTTGCAATGTTGTGTTGGGAGTGATCAGTAAAGAAAGCAAAGAAGA
TGATATCAACAGGGCACTTGATGTTTTGACTAAGACTTTACAATCATCTC
TCTTGGAATATCGAAATGACATCGCATACCATTGGATTTTTAAACAACTT
GATCATATTTGTGGATTGAGCTTCTCTTCCTCCTTCGACTTCGCATTTGG
TGAACAAAGTCTTTATCCAGCAGCTCTTTGTCTTCTTGAACAGAATCTTT
ATGTCTCCCAAGAAAACAATTTGTACACTGTCCATGATTCAAGTTTTCAC
AAGATATTGTTTTGGGTTGCAGTCAGCGTTCTACAGGCAACTGGTGTTTA
TCAAGATTTCAATTTAGCGGAAGCCACGCTGATGTGCTTGGCCAAATATC
AAGCTCTCCTTAAAAAGACTGAACTTTTTTCTTCATCCAGTCACTGTTAC
GATTACAATCCAGCCATTCAACCACGTTGCAATGTTGTGTTGGGAGTGAT
CAGTAAAGAAAGCAAAGAAGATGATATCAACAGGGCACTTGATGTTTTGA
CTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012906XLOC_012906Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022955-proteinTCONS_00022955-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022955-exon-sc0000437-1575043694:46495..46632TCONS_00022955-exon-sc0000437-1575043694:46495..46632Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1575043694:45825..45905TCONS_00022955-exon-sc0000437-1575043694:45825..45905Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1575043694:44492..44542TCONS_00022955-exon-sc0000437-1575043694:44492..44542Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1575043694:44057..44146TCONS_00022955-exon-sc0000437-1575043694:44057..44146Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1575043694:40308..40419TCONS_00022955-exon-sc0000437-1575043694:40308..40419Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1510915933:46495..46632TCONS_00022955-exon-sc0000437-1510915933:46495..46632Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1510915933:45825..45905TCONS_00022955-exon-sc0000437-1510915933:45825..45905Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1510915933:44492..44542TCONS_00022955-exon-sc0000437-1510915933:44492..44542Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1510915933:44057..44146TCONS_00022955-exon-sc0000437-1510915933:44057..44146Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1510915933:40308..40419TCONS_00022955-exon-sc0000437-1510915933:40308..40419Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1491911889:46495..46632TCONS_00022955-exon-sc0000437-1491911889:46495..46632Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1491911889:45825..45905TCONS_00022955-exon-sc0000437-1491911889:45825..45905Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1491911889:44492..44542TCONS_00022955-exon-sc0000437-1491911889:44492..44542Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1491911889:44057..44146TCONS_00022955-exon-sc0000437-1491911889:44057..44146Clytia hemisphaericaexon
TCONS_00022955-exon-sc0000437-1491911889:40308..40419TCONS_00022955-exon-sc0000437-1491911889:40308..40419Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:40308..46632 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.84512	0	0	0.149429	3.91242	2.9517	2.97678	4.44814	2.95161	3.94211	0.997184	2.49519	1.80152	4.24189	1.50474	2.94432	1.85977	4.10453	2.73798	2.45099	5.10037	5.43938	2.96012	2.94377	1.43768	1.48537	3.08637	4.38902	3.06344	1.73789
Blast
[Close]
BLAST of TCONS_00022955 vs. Swiss-Prot (Human)
Match: NF1 (Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2)

HSP 1 Score: 117.087 bits (292), Expect = 5.929e-30
Identity = 64/154 (41.56%), Postives = 88/154 (57.14%), Query Frame = 1 
Query:   31 YDYNPAIQPRCNVVLGVISKESKEDDINRALDVLTKA-------TGVYQDFNLAEATLMCLAKYQALLKKDSSFHKILFWVAVSVLQFGEQSLYPAALCLLEQNLYVSQENNLYTVHTLQSSLLEYRNDIAYHWIFKQLDHICGLSFSSSFDFA 471
            + YNP++QPR  VV G ISK      I + + +L+KA          Y    L EAT++ L K Q LL KDS  HK LFWVAV+VLQ  E +LY A   LLEQNL+      ++   + +   +  RN + +H   KQ+DH  GL+F+S+F+FA
Sbjct: 2238 FQYNPSLQPRALVVFGCISKRVSHGQIKQIIRILSKALESCLKGPDTYNSQVLIEATVIALTKLQPLLNKDSPLHKALFWVAVAVLQLDEVNLYSAGTALLEQNLHTLDSLRIFNDKSPEEVFMAIRNPLEWHC--KQMDHFVGLNFNSNFNFA 2389
The following BLAST results are available for this feature:
BLAST of TCONS_00022955 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NF15.929e-3041.56Neurofibromin OS=Homo sapiens GN=NF1 PE=1 SV=2[more]
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