TCONS_00022978 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022978
Unique NameTCONS_00022978
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022978 ID=TCONS_00022978|Name=TCONS_00022978|organism=Clytia hemisphaerica|type=transcript|length=1294bp
GGCGAATTCAAGATGGTAACCTTCGAAATGTAAACAAGTCAGGAAAAAGA
GCAAtctcattttttggaccatCTCATTTTTTCGTATGtaGACAAATAAA
AGAATGGAGCAAATTGAAGgaaAAGATTCAGAATCTAAATTGGGAGTCCT
TTCACCAAATTTTCAAAGTACACCATTGGTTAAAAAGGACTATGGTATGA
AAGGAATCTCTCCAAGAAGTCTGTATCAAAGCTCAAATTCAACTTACGGG
ATAGGAGCAAATAGAATGGATACCAAACTTTCAAACTCGAATGGAAAATC
TCCAGTGTTCAGTCCAAGTTTTTCAAATGGCACTCCAAATTCTTATAGAA
AGTCAATATCCCCAGGAACTAAGCTCAGTGATGTTGATTCTAGTACTGTT
TTACGCCAAAGACATGAATTGCAATTAATGATAGCAGAATTGAAAGATAG
GGAcagggaGCTGAATGAGCTTGTATCTTCACACCATCAACAATTAGTTG
CATGGGAACTCGATCGACAAAGGcTGATTACAGTTGAAAAGCAAATGGCT
AAATTCAAATCTGAACTAAAGAAACGACACAGTCAATGCAAAATATTGAA
GGATAGATTAAAAGAAGTTGAAGGGCAGTATTCAATGAAAACAACAGAGC
TTGAAAGTACACAGAAACATTTGCATCAAGTGTCACAGAAAGCGAGTGAT
AATGAAATCGAAGTGGAGGAATATAGGGCCACTAACGTGACATTGAAGGA
GACTGTTACTGAACTGACAAAGTCATTAGCTGAATCGCAATCAAGACAAC
AAGAAATCGCAACAATATTAAGACTCAAAGATAAAGACATTGAAGATGCA
AACTCAAGGATAGGAGAACTTACCGAGAAACTACAAACGTCTAATAAAGA
TTTGAAGAAATCAAAGCAATTCGAAAATCAATCGAAAATACATATTGACA
AACTAACACAAGAAAAGACTTCACTGAAATCACAACTTGAAAAACTAGAA
gAAGCAGTTATCAAACAAAATACAACGAATGACGAATCTATGGAAGAATT
CAATAATaTGAAACAAGAAATGGTTGTTGTACAAAAAGAATTACTTTTAG
CAGGTGAACGAGAAAAGCGGAAAGATAGCTTACTACAACTGTCGCGTTCA
AAACAAGAGAGAACTGAAATGGAATTAAAACAAGTTCGAAAGGTACTGAC
CTTGAAATTtatttactctcgggtacctaatagccaggggggcccgctaa
ttaatttttggaaaattttccacccaggacattcttattccaac
Run BLAST on NCBI

transcript from alignment at sc0000437:122139..135859-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022978 ID=TCONS_00022978|Name=TCONS_00022978|organism=Clytia hemisphaerica|type=transcript|length=13721bp|location=Sequence derived from alignment at sc0000437:122139..135859- (Clytia hemisphaerica)
GGCGAATTCAAGATGGTAACCTTCGAAATGTAAACAAGTCAGGAAAAAGA
GCAATCTCATTTTTTGGACCATCTCATTTTTTCGTATGGTATAAGAAAGC
TAAAATTTTATTCACTTCAGTTTGCTTATTTCTTAAACTGTGGAAATGTA
TTATTCCGTACACATGTTGGATAATTACTTTTAGAGGGCCACACGTTTTA
GAATCTTCCTTACAATCTAGTTTTTATATTTATAAAAACTAGATATTGCA
GGACCCTGCCGACGCACCGGACCTAAGGAACACCGGACACGCGAAAGTCC
GGTGTAAAATGAGAAATTTTTTTACCACCGGACAGTCTCTACACCGGACT
TAAAGAAGTCGGATGTCCGGTGTCGGAGAAGGATATTTGTTTCCACCGGA
CAATCAAAACACCAGTCCTGCTGTGCGTCCGGTGTTTCTTAATTTTTTGT
TTCATAAATGTCCGGCGTACAAAATTACCTGTATGCAACACCGTACTGAC
ACCGGACTTATTGCGTCCGGTGTAGCGAAAGGATAATTTTTACCACCGGA
CAAATACACCGGACAGTCCGGTGCGTCGGCAGGGTCCTGATATTGCTGAC
ACGTGTGGAAAGGAATGTCGGCATGACTGATCCTTTTGTTTCGATAATAA
CATCAAAGCGGGAACTAATTTTCTTCTCGTTTCTTTCTTTCCTTTTTCTT
TCTTATAAGTTCACGCTTTCCCTCGCACTCTCCAAGCGTGGTTAGCTCAA
GCGGTTAGACAGAGGACCCTGCCGACGCACCGGACTTAACGAACACTGGA
CACGCGAAAGTCCGGTGTAAAATGAGAATTTTTTTTACCACCGGACAGTT
TCTACACCGGACTTAAGGGAGTCGGATGTCCGGTGTCGGAGAAGGATATT
TTTTCCCACCGGACAATCAAAACACCGGACATGACCAGTCCGGTGCGTCC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGAC
TGACACCGGACTTATTGCGTCCGGTGTAACGAAAGGATACTTTTTGCCAC
CGGACAAATACACCGGACAGTCCGGTGCGTCGTCAGGGTCCTTTAGACAG
TCAGGGACATCCTGGCAAATGAACGGGGTATTTTTCACTTGTGACCATTG
GCAAACGAACGGGGTTGAAAACGAAAGTGACGTAATAGCGCCAAATACCC
AGTTTAATTAAACCAGGTTGGAAATAATTTGCTTCATTTCAAAGAACTGC
ATAGATGAAATTTTTTTTCCATGGGTCAATTTTGTCTTCGAAGATTGAAG
AAACTTTTAACGAAAAAATAAAGTTCCCAGTTTTCTTCCTTTTTCCCCTT
TTTCAGTTTGAAGTTCATTTGTATTCATTTTCACGCTTTTAGCCTGAGAC
GTCCTATTTCATTTACACTGGGTGACGAATACCCCATGCAAATGCTCACC
CCGTTCATTTGCCAGGATGTGCCTGACTGTTAGAGCGTCTGTCTCATAAG
CATGGGTTTCTGAGTTCGATCCCAATAGATAGATGTCCAATTTTCCAATT
CTTGATTTTGTTAAGTTTGCCTGGAACTCTGAGCTAACCACGCTTGAGAG
TGTGAGGGGAAGCGTTAACTTATAAGAATAAAAAAGGAAAGAAAGAAACG
AGAAGAAAATTAGTTCCTGCTTTGATGTTATTATCGAAACAAAAGGAATA
ATCGCTCTGACGCCATCGAAAAATTGTTTTGTTCACGTCACGGGTTGGTG
TAATTTAAGATGCACGATCTAACGATTTACGATGCACGATTCGCGATCCG
TGCATAAAATATGTTAATTCATGCGTAATTATGCTAATCNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCGGCC
CTTAGCGACCCTTAGCGGCCATTAGCGACCATTAGCGGCCTTTAGCGGCC
CTTAGCGGCCATATTCTATCGGACCTTGTTGTCCCGACGGCCGCTCTCAG
CCTTTCGTCGGTTGCCGGCAGTTTTTTAGCCTCGTTTTGGAAAATTGTAA
ACAAGGAATGCGTTGACAAAGTAATCGAAAAATCACAACACAGAATGTGG
ATCTGGATTTTTTTCTTGGAATTCTAAACTAATCTGATTTATATGAATTA
CATAAAATATTTCATTACTTTAGGAATTTTTTACAACAAGCTTAGCTATA
GAAAAGATTCCTAAACAGTAAACTTCTTGACATTTTCTGGACAAATTTTT
GTTTTTAAAGCTAGCAGTAAAGTATAGACCTGCTGACTGGCTCTGCTCTG
AAGGGACTTGTTTTGTTACTACTTAAATATATAGATAGATAGATAGAGAC
AGCCATAAAAAGTTCCTCACTTCTCATTTGTTTTGAATCTAGCTATGTAA
TCTCAAAAAATTAATTTTGAGTCACCTTTGAGTCACATCAAGGCAAGGAA
AATCAGTAAGAAGGTCAATAGTTTTACACTATTCTCTACTCTAAATTAGT
TTAAACATGCATTTTCTAACATCATTACAATTAATCTATATTTTTCAGAT
TTTACAAAGCAACTAATGAAATAAATAACTAACAGAATAATTTTTAATTG
TGGATGGCAAGCCTGAGGAGGCGAAGATTTAATATTTAAAGTATCAGACG
AGCCGAGATATGATGAGAAAATGTAAACGTGTAAAACAACAAAAAACTAA
TCGTTCACCGACACTCCACTGGTTTTTGTGTGTGAAATATCAATTGAGAA
ATCAAACTAGGAAATAAATGGAATGAATGCAAATATAGAAAAATGTGCTA
GAAAGTTGCTTGATAAATTCATCATGGTGGTGCCACCAAATCCTCCGTTC
CATGTTTGCAGAATTGACGAATTTCTTTACGCAAATATTCGGCCCGCTGT
TTCGTGAATCCTTTCGGTGGGACGATCTTCGGTAATGCAGCAGTCACTTT
TGGTGGATTTCGCTGAATGAAAATGGAGAACTCGACTGGTTCATCATCTA
GTGATTTATAACACTTAACAATTCCAGGCTGATCCTTCGACATCCTGAAA
TGGTGATATTTAAGAATATCTTTGATGGTCTGGAACCGTAACTCCTTTTC
AAAGTAATGTGACCAGTCATACGTTTGAACAGTGATATCTTTGTTGTGGT
TACCAACAAGTACAGCGAAATTACATTTTGATTGGTCGTAAACATCAGCG
ATCTCGTACGGAGATGATACTCGAGTTGATCGTAGTTTCTTTTTGAAGCT
GCCGAAGCACCTTAAGAAAGATACAAAAATATACATTTTAGGCTGCGCTT
GAAAATATATATTGGTTTGTCATCACCTGACCCTAGATTGACCGGTCGGT
CGAAAAGAAATATTTTGTTTTGAAGATTTTTCAAAATTTCTATTTAATTT
TCAGAGTAAAAAAATTTTCTGGGTTGGTAAGTTTTGAGAAGGGTTGGTCA
TAGGTGACGACAACCACCATTTTTTAAAGTTCAGTTTTATTCGACAACTA
TTTTTGTAATTTTTAATGAATTGTGTTTTAAAAATTTTGTCTAAAATTAT
GCTGAACAAGACTTAAGTCTGAATTAAAAGCTGTGACAGGTAATAAACCA
ACTTAAAAAGTGGAATTAATTTTTAAGTCTGTTTTTACCTTTCTTAAAAA
AACAAACTTATCCAACAAAATTCTTTTATTACCTGTCGCAGCTGAATTTC
GTGGGGCTGGCTATCATGAAACTGTACTCAATCTTTTCATGGAAACCATT
AAAAATCCTCTACATCAAATACCTAATAAAAGCATTGTTCTTATTCTGTC
CTGAAAGTGAAAAGAATATATGTGTCGCTGCAAGCGATTTAGAGCACATT
CAAGATCGGCCAGGGCCGACCAAGTAATTCTACGGCCCAAAATCGGCCCT
GTCGATGGTTTTCACTCTCTAGTGAAAACATAAAATAAAAATACTTCCAC
CTTCTTGCTTCTGTTGTGATACTTTCCATTTTGCTTTTGTTTCGATTTTA
GAGTCAGAGACTTTTCAAAACATTTGAACGTTCTCCTTCGAACACTTTAC
AAAAAGATTCGAAAGTTTTTAGGCACTCGAAATTGTAAACAAAAAATTGC
CGTCATACGAAAAAGATTTGCTTGTTTGTTTTCAGACCGGACTTGACCGA
ATTTGGCCGATTTGGACCGGTCTAGATCGGCCTTTGTTTAGAGAAAAGAT
TAAGAAACATGGCTTAGCTAAGATCGGCCTAGATTGGCCCAGATCGGTCA
ACATCGGCCAAATTTGTTATTCGGCCAGGAACGGTCCAGACCGGTCCATA
TCGGCCAAAAGTTTGGCTTTTTAAGGATCGGCCCATTTTCAATGTGCTCC
AAATCACGTGCAAGGACACATATTATATATTATTGTCGCCTTATTCAAGA
CAAGAATGAAACATCTACAAACATAGCTGTCAACTTCAACTTCCTAATGT
TTTATTACAGTACCATGAAGTCGGGTAACTTGCATCAGTGGAGGGAAACT
TGCATAGCCATCGAATGACTGACCAATCAAAGCAGCAAAATTTCAAAACA
AAGGAACTACGCAGTTTCTCTCGCAGTTCTACTCTACCATTTTTGTTTTG
ATTTAAACTTTGTATTTTAATGACCAGACAGGTCTTTCATTTGAGGGCTA
TGCATGTTTGCCTCCACTGATGCAAGTTACCCGATCTCAGGGTATACCGT
CAACTGCTCTAACTTGGGACGATTGGTCGAAACATGGGACTGCAGGGGAC
TGTTGATATTCTGGTCTGTATTTTCACTTACTGTTAAATCTCTTTGACAA
CAAATTTGTTTATGATATTTTCACCAAGTTTATCAATCATATTTTCTGTC
ATAACATCACGATAACTTTCACTGCTAGCGCGCCCTTTTTAACTTTTTTG
TTTTAATTCAAAATGACTGGACGCCGATTGGTGAATTACAGAACGCCCGT
CGCCTACCTGCTTATTGTCTGATGGGATTAACAAATAACGAGTGTGTAAC
TTGCCGCGTGAGTGACGTCAAACGCTCCATCGTTTTGCCACTAATTTGTT
CTTAACTTTGTTCAAGACACTACGGAACAACTTTCATATTTTGATTTAAA
AGCCTACTTGGGGTGCTAAAGAGAAATCGTGTATTTTTTAATACGCTGTT
CATTGACTCAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGTCAAA
TTATCGTCCCATGTTTTGTAAGTTCAGATAGTCCCAAGTTAGAGCAGTTG
ACGGTAATTATTCAGTATCTCTGCTGATTTCTTGACTCTCAGCAATAGTA
TTTTGCCTGAGCTGTGTTGTTTGACAAAATTTCCAATCAATTATGACTGC
CTTTTAAAATTGTCAATCAAACAAATAACAAAACAAATGATAAAGGCTAT
AGTAAAACTGTAACAATTGTTAAACAATTTTAGGAAAGCCATGGTATGAA
AGTCCATTCACTTTAAGTATGCACTCTTTTTTGTTATCATACGGAAACCA
TGTCAGCATAATCAAGAGTAATTCCCTAATTTTTAATTACTGTCAATGAA
TAATTAGTATTTTTTGTTTACCTTTACTATAATCGTTTTTCTTCTTTTAG
TAGACAAATAAAAGAATGGAGCAAATTGAAGGTAAGTTTTATAAAGAATG
AAGAAAAATCCCTTACCTTTGGACTTCTGCCAGACTTGACTGTATCTCTA
GTTATGTTCCTTCTTTTAAGAAGTTCATAAACAGAGCATACTATGTGGTT
GATAATTTGAACTATGCTATGAGTTAACATTTTAAAGATTTTTTGAAAAC
TTTTATTTACTTTCAACAGCTTTTACTCAAAATTGAACCTTAGGTAAACC
CTATTGCTGCAGTTTTCATCTTCGACCTTTAATCATTCTTGCATTGGAGA
ATGCAAAAGCTCAAGGACTAGACTGTTTAAAGAATCTATTTATTTCTTTT
TCAGGAAAAGATTCAGAATCTAAATTGGGAGTCCTTTCACCAAATTTTCA
AAGTACACCATTGGTTAAAAAGGTAGACTTTTGATTATCAAAAAGCTTTA
TTTATATAGCGTTTACTTAGTATTACAGCCTTGTTACATACATTTTCCAT
TAAAAATGGTTCTTTAAAGATAAACAATTCTTTGTATTGCAAAGTTTTTA
AACAATAAATCCATCATCATACTGCAATTGTATTTTCATGTTGTTGATCA
CAATGATCCATTTATATAATTCATATTCATAAAACATGATCATCCTTTCT
TTTAGGACTATGGTATGAAAGGAATCTCTCCAAGAAGTCTGTATCAAAGC
TCAAATTCAANAGGACTATGGTATGAAAGGAATCTCTCCAAGAAGTCTGT
ATCAAAGCTCAAATTCAACTTACGGGATAGGAGCAAATAGAATGGATACC
AAACTTTCAAACTCGAATGGAAAATCTCCAGTGTTCAGTCCAAGTTTTTC
AAATGGCACTCCAAATTCTTATAGAAAGTCAATATCCCCAGGAACTAAGG
TTGACTGTTTTTCTTTCATTCTTACACTACAGCTCAGTTTTTTACTTTAC
TTGCCTCATTTTGGTAAATGTTTCTTTGTACTTTATCCTATCAGTATTAT
GATTACGATTTTGATTGCTGACCTAGTTTCATTTGAATTTCAGCTCAGTG
ATGTTGATTCTAGTACTGTTTTACGCCAAAGACATGAATTGCAATTAATG
ATAGCAGAATTGAAAGATAGGGACAGGTTTGAAATTTTGAAACTTTTCAG
GTTTTTCTGTTTCAGCTCCCAACCAGCCTTTGATCATTTGATAATTTGAC
AGTTAAAACTTGTATTAAAAAAAAAGAAATTTGATCTCCATAGCTTAATC
CTATTTTATTTTTTAGGGAGCTGAATGAGCTTGTATCTTCACACCATCAA
CAATTAGTTGCATGGGAACTCGATCGACAAAGGGTAACTAATACACACTG
ATAGATTTTTACAAAACTTTCTAAAAATTTAGTAGTAAGTAAGAAAGTCT
GCAGCAGTCTTTGGTTTGTTGACCAGGAAAGGGATGAAACCCAAATTCTT
GCACTGTAGCTGTTTTCTCTTTCCATTGCACTATGGCCACTAAAAGCCCA
ACTTTTCTTTTTTTTCACTTACCAGTATTTTAGAGGGATAATATTGAGAA
TGTTAGATGCTTCACATTTTTACCTTTTTGTGAGAAACATAAATAATTTT
TGCATTTTTTTAGCTGATTACAGTTGAAAAGCAAATGGCTAAATTCAAAT
GTATGTTATTTTCTAACTTCTCTATTTTGTTTTTTGAAGAGCGCCATCTT
TCTTATTTTCCTTCTCAAGCTTGTCAAAACTTACATTGTTTTTTGAAGAG
CGCCATCTTTCTTATTTTCCTTCTCAAGCTTGTCAAAACTTTCATTTTAT
TGTGCTTCAACGATAATGTGTTCCAATTCTACCTGGGTTGGATTAGTATA
TAGAGAGACAACTAATTTGACTATTATAAAACTTTTTATGACTTTAAAAG
ATAATAGTATTCTGAGGAATTGGAAGCTTACCGATAAATTACTTATTTTT
CATAGCTGAACTAAAGAAACGACACAGTCAATGCAAAATATTGAAGGATA
GGTTTGTGTAACTATTCAGTATATTACAATATAAATTCAATCTTAGGACC
AAGATTTTGGATGTCAAAAGTTTAATTATTAATTTAATAGCAAGGATTTT
GGATGTCAAAAGTTTTAATTATTAATTTAATGGCAAGGGGAGAAATACTC
TTTTTTGCACAAACAGGCCCGTCATTATTTAATATCATACTATTATCTAT
TATAAAAACTTTCCTTTTCCCTCATATTATAACATTACATTGGTTGAGTA
AGGCAGTGAACTCTTACTCTCGGGTACCTAATAGCCGCCCCCCCCCCCGC
TAATTAATTTTCCACCCAGGACATGCTTATTCCAACCCCCCCGCTTATTA
ATTGTTGGGAAAATATTTTTGAAAGTTCCCTCTTTTGCCCTAATTCAGCT
GTATTAGCCTCCTTTTCAAAATTTTTCCAGCCAGGACATTTTTATTCCAA
TCCCCCCCGGCTATTAGGTACCCGAGAGTAATTAAACAATGATTTCAAAC
CACCAGGATTGTTTCTAACTTTATATATTAACTTACAGTTGTGCTGACAT
AATATCTGAAACAGGTAATTAATATTTCACCATTTCAGATTAAAAGAAGT
TGAAGGGCAGTATTCAATGAAAACAACAGAGCTTGAAAGTACACAGGTAA
ATGATTTCATTATAAATGCAAACATTTGCGAAATCCAACAGACGATTCTT
TTCTGGTAGCTTAATTTTCTCCACCAGCACCTGAATGTAAATCCATTTTT
CTGAAAATGTCAATATTAACAATCATATCTTGATGTCTCGATTACCTATA
ATTTCCTTTTTGGACCTATCTTTGGAGGTCCTATAAATTAACCCGTGTTC
GTTCGTTCGTCCGTTCGTTACTAGCTTTTCTCGGGATTGGCTCATTAGTT
TTTCCTAATTTTTGGCACAAAGATGCAAAATGGTAATGCCCAAAATGTGA
CGGAGCCCGATTTTCGAAAAAAATTTATTTCCGGCCGAAAATGCCGGAAA
TATACCGGAAAACCCGGTTTTTCGGCATTTTCTCGAGATTTCATCATTAG
TTTTTTCTGATTTTTTGCACAAAGATGCGTATTAGCAATGCCTAAAACAT
GGATTAGTCCGATTTTTGAGAAAAATTCTATTCCGGCTGAAAATGCCGGA
AATATCCCGGAAGTCGCCGTTTTTGCAGATTTCCATTGGACTTTTTCCTT
ATATTTCGTTGTTTTTTCACACAAAAACATTATTTGTAGCAATGCCCACC
ATCAAGCATGGTTTAATTGTCAATAAAAGTGATTTTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCACACTGATGCAA
AATGGCAATACCTAAAATATGACAGAGCCTGATTTTCAATTAACGTACTT
TTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAATCGTTTTTTGAATTT
TCTTGAATTTTCATCCTTATTTCTTTTCTGATTTATTGCACAGCGATGCA
ATATAGTGATTCTCGAAAAGTAAAGGAGCCCGATTTTCGAAAAAAAGATT
TTCCCGCAGAAAATGTCGGAAATATGCCGGAATAACCGGTTTTTTGGCAC
TTTCTCGAGATTTCATCATTAGTTTTTCTGATTTTTTGCACAAAGATGCG
TATTAGCAATGCCCAAAACATGGCCTATTCGGATTTTTGAGCAAATTTTT
TTTCCGGCCGAAAATGCCAGAAATATGCCGGAAATCGTCGTTTTTTCAGA
TTTTCATTGGACTTTTTCCTCATATTTTTTTGTTTGTTTCTTCGCACAAA
AACATTATTGATAATAATGCCCACCATCAAGCATGATTCAATTGTCAATA
AAACTGATTTTTGCAACCGGAACTTTCTATTTTTTTCCCTACTCCCCTTC
CCTCTCCCCCAATCAACAATCAATGATAAAATTTAATGCGTTATGCAATT
TCGCTTAACGCTATATTTTCTGACTGATGGTTTTCATTTTCTCCTTATTG
CTATCTAATTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTAC
TATAATATATCTGAAGCCTTGAGCACTATAAAGTAAATTTAAGATGTCAT
ATGATAGTTCTTTCATTAAACTCATAGAAACATTTGCATCAAGTGTCACA
GAAAGCGAGTGATAATGAAATCGAAGTGGAGGAATATAGGGTATGTTTGA
GAGCATTTTTGTTTTTATTTTCGAGTTCCTTTTTAATTGATATATAATGG
GTGTTTTATGGTGTTTTATGGACTATTTCCTGTATCATAATGGCACCAAA
CAAATTTAGTTCCTTTCGAAATAGAAAGAACATCATAAGTTCATTTTCAG
TTTTATTTTGTCCTTTTCCAGGCCACTAACGTGACATTGAAGGAGACTGT
TACTGAACTGACAAAGTCATTAGCTGAATCGCAATCAAGACAACAAGAAA
TCGCAACAATATTAAGACTCAAAGTAAGATTTTGTCATCTTTTTCATAGT
ATCACTCATTTTCGTTTGATTGGTTTTAAGGTTGTTTTGAATCTTACAAA
TTTTGACAATTTGGTATGTTTGCTAGATAAATTTCACAAACTTTTAGGAA
TTTGGTGAATCATGGGTTAATTTGAGACAATCTTAATGTTTTCAGAATGT
TTTCAGGTGCCCAAAACAATTTTAAATAGCAAAAAAGTTTAAAAAAAACA
ACAATATAAGAAGATGAAAACACTAAACACACTCAGGGCATTTTGAACTT
AGAAAATAAAAACAAACTGTACCCTTTTAATCAAAAAAGTTAAAATTTTT
CCCTTACCCATTAGGACATAAACACTGTTAAAGATATTTTCAGTGCCTGT
AAATCAAAAGAAAGTTTTTTTTTTGTTTTTTTTTGCTCTAGCAAATCGTA
TTCTCCAACTTCTCGGGAAATTTAAGACCCCCGTTCATATTGTATTTCAC
CTTGTAGTGCACTCTTGAAGCATCGCTTAACCTTCAACACATTTTGAATT
TCAAGGGTTTTCCATAACCTGTTTAATTTGGTTGTCACACTTATTATTAC
GCAATTAAGAGTTTTGTTTTTCTTCATGTTTTAGGATAAAGACATTGAAG
ATGCAAACTCAAGGATAGGAGAACTTACCGAGAAACTACAAACGTCTAAT
AAAGATTTGAAGGTACAGTAATAGGAATAAAATAGGAAGGTTGGAATCAC
TGAAAAAGTTGTTTTCCCCTCTAACCACTTAGCAAGTAGTTCTAAAGACG
GGTGTCGGAATTAGAAGAGGGGTGTCGACATTAGACCATTTCAAGGGGAT
AGTTAAGCAAAAACTGGTACGGTGATGTGCCACTGTTTAGGTTAACTTCA
TTCATCTCGGGGGTTGGAAAATTTCCCAGAATTTAATAAACGGGGGACCT
AATTGCCGAGGGGGTTGGAAATTGTACTTCTGACTGCTTCTGAAAACCCA
AAAATAAGGTAAATATAAGCTAAAATCAGGCTTATTAGAGCAAAATAAGG
CCGGCCTTCTCTTTGACAGCTGAAAACATTCTTAAAAATTAATAAACTGG
GGGAAGGGACAATTTTCGAAAAATTAACAAGGGGGGGGGGGGGCGTTTAT
TTGGAACCTAAGAGTATGATGAAGAAAATGTAACTTTCTCATGCAGAATG
CTCGAGAACACGCATTGCTGTTATCGCAGTTACATACAGTAATGAAGCTT
TAAACGTATTTTAACACGGTTGTCGCTTTGACGGTTGATAAGCATGCAAA
GATTCGAAGGAAATAATTTCTTTTTAATTTTTTTTCCTTAATCAATTTGC
ATACAATATTTGGAAAAAGTTTGTCTTGATTTCTGTTCTGAGAATAATTA
ACATTATTTTTAAATGTAAATTTTTGTGTTTTACCGGGTGTCCCAAAAAA
ATTTACACGATTTCAAACAATAAACTGACGTTTTGATTTCCAATCAACAC
ACAATTTTACACAACGGAGATTTAGGGTATTTTACTTTTTGTGTTAAAAT
CTTAGACACCAGCTCATAATAGAATTTGCTTTTTTAGAGCACACTGCATG
ACTAATTCAAAACCTTTCTCATTTTTAATAGAAATCAAAGCAATTCGAAA
ATCAATCGAAAATACATATTGACAAACTAACACAAGAAAAGACTTCACTG
AAATCACAACTTGAAAAACTAGAAGGTAATAATTTGAAATATATATCTTT
TGCGATGTTTCTGATGTACCAAAAAATAAGGTAAAAAGTTTTTACCGGGG
TTTAGGTTATATTCAATAAACATTGGTTGAAAAATGGCAAACAACACAAA
AATTTAGTGCATACCCTTAAAGCGAATGGTCTTTACTATTATTATTATAA
TTTTAGAAGCAGTTATCAAACAAAATACAACGAATGACGAATCTATGGAA
GAATTCAATAATGTAATTATGTTCGTTTTACTTGGTAAATATTTACTCTG
GAAAGTGATTGAGGAACACAGCAAATTCCTAGGCGAAATATTGTGGTATT
GCCCCTTAAAACTCACGATACCTCGAACCCAGGGGGATCTCGATTGGACT
CTTGTAGTGTAGAGAAAATTTAATCAAATTTAAGTAAATGTGGGCGGAAA
TTCGACCATTACGCGCCATTTTCTTGATTTGTTTGTCCATTTTAGGGCAT
AAATTTAAAAATTCTGCCCAAAAAAACGTTTTTCTCACTTTTTACACCCT
ACAGTGCACTTTCCATTACCTTCGACCCTCACAGTGAACTTTGGGAAGTC
TGAAAAACGTACCGTTTTAAAAATCCTTTTTCGTATAAAATGTTTTTATT
TCTTATATTTTTTTTTCCAGATGAAACAAGAAATGGTTGTTGTACAAAAA
GAATTACTTTTAGCAGGTGACTTTGATATTCTTCACTTATCCAATAATCA
AAGGATAAACAAAGTACAATTTTCAGGAAAATACGGTTTGGAAAGTTTTG
CAGTAGCTATTTTTCTGCTGATTACTTTAATGGGATAAACTTTCGCGGGG
ATTAAATTTCGCGGGTGGCACTATTGGGTGGCATTATTTTCACGATTCTG
TGACTTTTACTGTCAAATCATGCATGTTGGTTGCTGAAGTACACATTATT
AGCGCTTCTTTGATGCAAGTAACCATTCAAATAGTATTTATTTGACATAT
TTTGAGTTTGTTTAGAAATATTTCGCGGATGAGGCCCTTCCAAATTTCCA
TTGGGACTTAATTTAATCCTCGCGAAAGTTTATCCCATTAAAGTAATGTT
TTACGTTTTTAAGTGTTTAGTACATAAATCAAAATTTCTGTGATATATGA
CATAATATACCTTTACACCAACCCTTGGGAAATAACAAATCTGCAAAAAT
CGGCTCTCTTCGCGAAACTCTGTAGAAATAGCCAATTTCATTCACTGCGC
AGCAAAGATTATTTCCCCAAAAGTTCATTCCCACAAAAACTAGCTCCTAC
GAAAGTTAATAAGTTTCCCTTGATTTTTAGGTGAACGAGAAAAGCGGAAA
GATAGCTTACTACAACTGTCGCGTTCAAAACAAGAGAGAACTGAAATGGA
ATTAAAACAAGTTCGAAAGGTACTGACCTTGAAATTTATTTACTCTCGGG
TACCTAATAGCCAGGGGGGCCCGCTAATTAATTTTTGGAAAATTTTCCAC
CCAGGACATTCTTATTCCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012909XLOC_012909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022978-exon-sc0000437-1575043694:135772..135859TCONS_00022978-exon-sc0000437-1575043694:135772..135859Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:129979..130009TCONS_00022978-exon-sc0000437-1575043694:129979..130009Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:129588..129655TCONS_00022978-exon-sc0000437-1575043694:129588..129655Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:129111..129296TCONS_00022978-exon-sc0000437-1575043694:129111..129296Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:128884..128966TCONS_00022978-exon-sc0000437-1575043694:128884..128966Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:128677..128743TCONS_00022978-exon-sc0000437-1575043694:128677..128743Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:128360..128396TCONS_00022978-exon-sc0000437-1575043694:128360..128396Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:128009..128054TCONS_00022978-exon-sc0000437-1575043694:128009..128054Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:127364..127421TCONS_00022978-exon-sc0000437-1575043694:127364..127421Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:125620..125682TCONS_00022978-exon-sc0000437-1575043694:125620..125682Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:125337..125438TCONS_00022978-exon-sc0000437-1575043694:125337..125438Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:124648..124725TCONS_00022978-exon-sc0000437-1575043694:124648..124725Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:123635..123728TCONS_00022978-exon-sc0000437-1575043694:123635..123728Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:123398..123453TCONS_00022978-exon-sc0000437-1575043694:123398..123453Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:122944..122989TCONS_00022978-exon-sc0000437-1575043694:122944..122989Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1575043694:122139..122329TCONS_00022978-exon-sc0000437-1575043694:122139..122329Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:135772..135859TCONS_00022978-exon-sc0000437-1510915933:135772..135859Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:129979..130009TCONS_00022978-exon-sc0000437-1510915933:129979..130009Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:129588..129655TCONS_00022978-exon-sc0000437-1510915933:129588..129655Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:129111..129296TCONS_00022978-exon-sc0000437-1510915933:129111..129296Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:128884..128966TCONS_00022978-exon-sc0000437-1510915933:128884..128966Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:128677..128743TCONS_00022978-exon-sc0000437-1510915933:128677..128743Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:128360..128396TCONS_00022978-exon-sc0000437-1510915933:128360..128396Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:128009..128054TCONS_00022978-exon-sc0000437-1510915933:128009..128054Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:127364..127421TCONS_00022978-exon-sc0000437-1510915933:127364..127421Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:125620..125682TCONS_00022978-exon-sc0000437-1510915933:125620..125682Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:125337..125438TCONS_00022978-exon-sc0000437-1510915933:125337..125438Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:124648..124725TCONS_00022978-exon-sc0000437-1510915933:124648..124725Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:123635..123728TCONS_00022978-exon-sc0000437-1510915933:123635..123728Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:123398..123453TCONS_00022978-exon-sc0000437-1510915933:123398..123453Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:122944..122989TCONS_00022978-exon-sc0000437-1510915933:122944..122989Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1510915933:122139..122329TCONS_00022978-exon-sc0000437-1510915933:122139..122329Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:135772..135859TCONS_00022978-exon-sc0000437-1491911889:135772..135859Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:129979..130009TCONS_00022978-exon-sc0000437-1491911889:129979..130009Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:129588..129655TCONS_00022978-exon-sc0000437-1491911889:129588..129655Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:129111..129296TCONS_00022978-exon-sc0000437-1491911889:129111..129296Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:128884..128966TCONS_00022978-exon-sc0000437-1491911889:128884..128966Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:128677..128743TCONS_00022978-exon-sc0000437-1491911889:128677..128743Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:128360..128396TCONS_00022978-exon-sc0000437-1491911889:128360..128396Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:128009..128054TCONS_00022978-exon-sc0000437-1491911889:128009..128054Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:127364..127421TCONS_00022978-exon-sc0000437-1491911889:127364..127421Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:125620..125682TCONS_00022978-exon-sc0000437-1491911889:125620..125682Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:125337..125438TCONS_00022978-exon-sc0000437-1491911889:125337..125438Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:124648..124725TCONS_00022978-exon-sc0000437-1491911889:124648..124725Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:123635..123728TCONS_00022978-exon-sc0000437-1491911889:123635..123728Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:123398..123453TCONS_00022978-exon-sc0000437-1491911889:123398..123453Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:122944..122989TCONS_00022978-exon-sc0000437-1491911889:122944..122989Clytia hemisphaericaexon
TCONS_00022978-exon-sc0000437-1491911889:122139..122329TCONS_00022978-exon-sc0000437-1491911889:122139..122329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000437supercontigsc0000437:122139..135859 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.51417	1.81753	0.398881	0	57.7297	43.3087	21.9604	23.1819	5.85032	11.0031	11.86	6.87965	2.73567	0.427032	1.1204	3.44653	0.346745	1.79939	1.22385	1.67934	3.28422	2.90978	3.07452	4.25479	7.69922	12.2946	2.20096	0.752426	3.26726	0.842849
Blast
[Close]
BLAST of TCONS_00022978 vs. Swiss-Prot (Human)
Match: CCD62 (Coiled-coil domain-containing protein 62 OS=Homo sapiens GN=CCDC62 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.587e-51
Identity = 113/292 (38.70%), Postives = 180/292 (61.64%), Query Frame = 2 
Query:  377 SDVDSSTVLRQRHELQLMIAELKDRDRELNELVSSHHQQLVAWELDRQRLITVEKQMAKFKSELKKRHSQCKILKDRLKEVEGQYSMKTTELESTQKHLHQVSQKASDNEIEVEEYRATNVTLKETVTELTKSLAESQSRQQEIATILRLKDKDIEDANSRIGELTEKLQTSNKDLKKSKQFENQSKIHIDKLTQEKTSLKSQLEKLEEAVIKQNTTNDESMEEFNNMKQEMVVVQKELLLAGEREKRKDSLLQLSRSKQERTEMELKQVRKVLT-----LKFIYSRVPNSQ 1237
            S+V+ ST+ +QR ELQL+I ELKDRD+ELN++V+ H QQL++WE DRQ+++T+E++ +K + EL KR    + L  ++K +E       T L+ TQ  L +++QKA+ + +  E+  A N TL  T+ EL+  + + Q+R+Q + T+++LKDKDI +A + I + + K +     L+ +K  E           Q+  +LK ++ KL+E + ++ T N+E  EE   +KQE   +  ELL   EREKRKD LL +++SKQERT  EL  +R++       L+F+   V NSQ
Sbjct:   16 SEVEISTIEKQRKELQLLIGELKDRDKELNDMVAVHQQQLLSWEEDRQKVLTLEERCSKLEGELHKRTEIIRSLTKKVKALESNQMECQTALQKTQLQLQEMAQKATHSSLLSEDLEARNETLSNTLVELSAQVGQLQAREQALTTMIKLKDKDIIEAVNHIADCSGKFKMLEHALRDAKMAETCIVKEKQDYKQKLKALKIEVNKLKEDLNEKTTENNEQREEIIRLKQEKSCLHDELLFTVEREKRKDELLNIAKSKQERTNSELHNLRQIYVKQQSDLQFLNFNVENSQ 307
The following BLAST results are available for this feature:
BLAST of TCONS_00022978 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CCD627.587e-5138.70Coiled-coil domain-containing protein 62 OS=Homo s... [more]
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