|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022996 ID=TCONS_00022996|Name=TCONS_00022996|organism=Clytia hemisphaerica|type=transcript|length=989bp
TGGCTCCATGGAAGGATACATTTATTCTTTAAAAACCATGTTCTGGATTC
TTTGAAATCACTAACAAAGATGCTACCTGAGCAACAAACTCACAAATGTC
GTGACAAAAACTGTACCAAaAGATTTTTCTTTCTGGCTGCAAAGAATTTA
CATGAGGAATTGGCTCACGGTCTTGCTCCTACGGCATCGTTGGAAGAACC
AAAAGAAAACATCAGAGACGACCTGTACAAATATAGCTGCTCTCGACTTT
ATGTTGGTTTGTTGTTGCTTAACGCAAATGATCCAGTGAAAGAAGGAGAT
GGTGACAGGCTGATTCGATTTTATAATATCTACACATTCATCTTTAGGAT
GAATGGTAATGACAAATATGCATACATCTGCTTGAGGTTGAAAGCAAGAG
AGCTTGCTTTGATGTCACCAAGAGATTTTCATCGCCTGAAGTGGAATCGT
TTTGTCAACAATCACGGTGGACGTGCCCAGAATATCTCGTTAGACCTCAG
ACTGGAGCACATCAACAAGGTTACAAAAGCCCTAATCAAGTCCCAGGGAA
TGCAGAACTTGACAGACGACGTGTCGAAGACATTTCAAAAGCCATTGGAG
GCATGGAAGAGCTAGTGGAATCTCAGCTAACAGATGCTGGGGTCACAAAG
AGATCTGGACACCACTCAAATACCCACAAGCAAGACATGTTCCAATCACT
TTTCAAAGAGATTCACATGAACAACAAAAACTTTAAGAAAAGAGAGGGAA
GAAAACTTGAGTGTTTTAAAAGCTTTGACAGTGATATCTTTGGAAAGCTT
AACAAAGGATCATTGTTGAAATGGCTGAAAAGATTGACTAAAAAGTGGCA
TAACCAAGACTTTGAATACAACTGTGAAGAGGACAATTGAAATCAGGGTT
TTCCTTAATATTAAGTTGTGTTTAATTTAACAAGGACAAATTTTTGCGGG
ATGAATCTTTTAGCAGGTTTTTAATTCAGTGACTTTTGG Run BLAST on NCBI protein sequence of TCONS_00022996-protein >TCONS_00022996-protein ID=TCONS_00022996-protein|Name=TCONS_00022996-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
WLHGRIHLFFKNHVLDSLKSLTKMLPEQQTHKCRDKNCTKRFFFLAAKNL
HEELAHGLAPTASLEEPKENIRDDLYKYSCSRLYVGLLLLNANDPVKEGD
GDRLIRFYNIYTFIFRMNGNDKYAYICLRLKARELALMSPRDFHRLKWNR
FVNNHGGRAQNISLDLRLEHINKVTKALIKSQGMQNLTDDVSKTFQKPLE
AWKS Run BLAST on NCBI transcript from alignment at sc0000438:163909..165145- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022996 ID=TCONS_00022996|Name=TCONS_00022996|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at sc0000438:163909..165145- (Clytia hemisphaerica)
TGGCTCCATGGAAGGATACATTTATTCTTTAAAAACCATGTTCTGGATTC
TTTGAAATCACTAACAAAGATGCTACCTGAGCAACAAACTCACAAATGTC
GTGACAAAAACTGTACCAAAGTAAGATTTAAAAAAATTGATGTTAGGAAA
ATCAAGGGGTTCAAAGTTAATGAGATGTTTAAAATCTCTATTTACAATAA
TGACACTTATTTGAGAAAGGTTGAAGAGCTGTTAACTGATTTAATCAGTG
TTTTCTATCAAAGCTGTACTATTTACTAAGCAAAAGCTTGCACCTGAATT
TGAAAAATAAAAAAATGAGGATGGTATGAGGTTATATTACATAATATTTT
ATCATTTTCTTTTCACAGAGATTTTTCTTTCTGGCTGCAAAGAATTTACA
TGAGGAATTGGCTCACGGTCTTGCTCCTACGGCATCGTTGGAAGAACCAA
AAGAAAACATCAGAGACGACCTGTACAAATATAGCTGCTCTCGACTTTAT
GTTGGTTTGTTGTTGCTTAACGCAAATGATCCAGTGAAAGAAGGAGATGG
TGACAGGCTGATTCGATTTTATAATATCTACACATTCATCTTTAGGATGA
ATGGTAATGACAAATATGCATACATCTGCTTGAGGTTGAAAGCAAGAGAG
CTTGCTTTGATGTCACCAAGAGATTTTCATCGCCTGAAGTGGAATCGTTT
TGTCAACAATCACGGTGGACGTGCCCAGAATATCTCGTTAGACCTCAGAC
TGGAGCACATCAACAAGGTTACAAAAGCCCTAATCAAGTCCCAGGGAATG
CAGAACTTGACAGACGACGTGTCGAAGACATTTCAAAAGCCATTGGAGGC
ATGGAAGAGCTAGTGGAATCTCAGCTAACAGATGCTGGGGTCACAAAGAG
ATCTGGACACCACTCAAATACCCACAAGCAAGACATGTTCCAATCACTTT
TCAAAGAGATTCACATGAACAACAAAAACTTTAAGAAAAGAGAGGGAAGA
AAACTTGAGTGTTTTAAAAGCTTTGACAGTGATATCTTTGGAAAGCTTAA
CAAAGGATCATTGTTGAAATGGCTGAAAAGATTGACTAAAAAGTGGCATA
ACCAAGACTTTGAATACAACTGTGAAGAGGACAATTGAAATCAGGGTTTT
CCTTAATATTAAGTTGTGTTTAATTTAACAAGGACAAATTTTTGCGGGAT
GAATCTTTTAGCAGGTTTTTAATTCAGTGACTTTTGG Coding sequence (CDS) from alignment at sc0000438:163909..165145- >TCONS_00022996 ID=TCONS_00022996|Name=TCONS_00022996|organism=Clytia hemisphaerica|type=CDS|length=1230bp|location=Sequence derived from alignment at sc0000438:163909..165145- (Clytia hemisphaerica)
AGATTTTTCTTTCTGGCTGCAAAGAATTTACATGAGGAATTGGCTCACGG
TCTTGCTCCTACGGCATCGTTGGAAGAACCAAAAGAAAACATCAGAGACG
ACCTGTACAAATATAGCTGCTCTCGACTTTATGTTGGTTTGTTGTTGCTT
AACGCAAATGATCCAGTGAAAGAAGGAGATGGTGACAGGCTGATTCGATT
TTATAATATCTACACATTCATCTTTAGGATGAATGGTAATGACAAATATG
CATACATCTGCTTGAGGTTGAAAGCAAGAGAGCTTGCTTTGATGTCACCA
AGAGATTTTCATCGCCTGAAGTGGAATCGTTTTGTCAACAATCACGGTGG
ACGTGCCCAGAATATCTCGTTAGACCTCAGACTGGAGCACATCAACAAGG
TTACAAAAGCCCTAATCAAGTCCCAGGGAATGCAGAACTTGACAGACGAC
GTGTCGAAGACATTTCAAAAGCCATTGGAGGCATGGAAGAGCTAGTGGCT
CCATGGAAGGATACATTTATTCTTTAAAAACCATGTTCTGGATTCTTTGA
AATCACTAACAAAGATGCTACCTGAGCAACAAACTCACAAATGTCGTGAC
AAAAACTGTACCAAAAGATTTTTCTTTCTGGCTGCAAAGAATTTACATGA
GGAATTGGCTCACGGTCTTGCTCCTACGGCATCGTTGGAAGAACCAAAAG
AAAACATCAGAGACGACCTGTACAAATATAGCTGCTCTCGACTTTATGTT
GGTTTGTTGTTGCTTAACGCAAATGATCCAGTGAAAGAAGGAGATGGTGA
CAGGCTGATTCGATTTTATAATATCTACACATTCATCTTTAGGATGAATG
GTAATGACAAATATGCATACATCTGCTTGAGGTTGAAAGCAAGAGAGCTT
GCTTTGATGTCACCAAGAGATTTTCATCGCCTGAAGTGGAATCGTTTTGT
CAACAATCACGGTGGACGTGCCCAGAATATCTCGTTAGACCTCAGACTGG
AGCACATCAACAAGGTTACAAAAGCCCTAATCAAGTCCCAGGGAATGCAG
AACTTGACAGACGACGTGTCGAAGACATTTCAAAAGCCATTGGAGGCATG
GAAGAGCTAGTGGCTCCATGGAAGGATACATTTATTCTTTAAAAACCATG
TTCTGGATTCTTTGAAATCACTAACAAAGATGCTACCTGAGCAACAAACT
CACAAATGTCGTGACAAAAACTGTACCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022996-exon-sc0000438-1575043694:165026..165145 | TCONS_00022996-exon-sc0000438-1575043694:165026..165145 | Clytia hemisphaerica | exon |
| TCONS_00022996-exon-sc0000438-1575043694:163909..164777 | TCONS_00022996-exon-sc0000438-1575043694:163909..164777 | Clytia hemisphaerica | exon |
| TCONS_00022996-exon-sc0000438-1510915933:165026..165145 | TCONS_00022996-exon-sc0000438-1510915933:165026..165145 | Clytia hemisphaerica | exon |
| TCONS_00022996-exon-sc0000438-1510915933:163909..164777 | TCONS_00022996-exon-sc0000438-1510915933:163909..164777 | Clytia hemisphaerica | exon |
| TCONS_00022996-exon-sc0000438-1491911889:165026..165145 | TCONS_00022996-exon-sc0000438-1491911889:165026..165145 | Clytia hemisphaerica | exon |
| TCONS_00022996-exon-sc0000438-1491911889:163909..164777 | TCONS_00022996-exon-sc0000438-1491911889:163909..164777 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000438 | supercontig | sc0000438:163909..165145 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
|
