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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023050 ID=TCONS_00023050|Name=TCONS_00023050|organism=Clytia hemisphaerica|type=transcript|length=1878bpRun BLAST on NCBI protein sequence of TCONS_00023050-protein >TCONS_00023050-protein ID=TCONS_00023050-protein|Name=TCONS_00023050-protein|organism=Clytia hemisphaerica|type=polypeptide|length=569bp IWNTQNIYQSLEKGVGSFSFSRFINLSPKELVLLFRSQIFRLIHSFLVLSRun BLAST on NCBI transcript from alignment at sc0000439:84851..97043- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023050 ID=TCONS_00023050|Name=TCONS_00023050|organism=Clytia hemisphaerica|type=transcript|length=12193bp|location=Sequence derived from alignment at sc0000439:84851..97043- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000439:84851..97043- >TCONS_00023050 ID=TCONS_00023050|Name=TCONS_00023050|organism=Clytia hemisphaerica|type=CDS|length=25650bp|location=Sequence derived from alignment at sc0000439:84851..97043- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023050 vs. Swiss-Prot (Human)
Match: INO80 (DNA helicase INO80 OS=Homo sapiens GN=INO80 PE=1 SV=2) HSP 1 Score: 361.303 bits (926), Expect = 4.321e-109 Identity = 196/391 (50.13%), Postives = 257/391 (65.73%), Query Frame = 1
Query: 52 FSFSRFINLSPKELV-LLFRSQIFRLIHSFLVLSHLQHTHTLQPFITRAEDDGSNFHNEPSQKKYLTRKDLLICSPRHHSMFNSSQ----RDFVFVRSTSTCSGFNSCKIIEVVKENSLPKCPEERHCVAVDYPMFLSSYMPKVYSPPIEVYCSDRSAAYQYKRRAF---GTDDLLEFYMHGP---CSQPTNRQLLFYPPPRQGLQALQPVNGWSRVRVPNRTALLSDSGKLLVLDQLLTRMKREGHRVLIYSQMTKMIDILEEFMNYRQHSYIRLDGSSKISDRRDMVNDFQSRDDIFAFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQKRQVTVYRLVTKGTVEEKILNRAREKSEIQNIVISGGQMKTDVLRPK 1191
FSF RFI++SP E+ L+ + + R + FL L H L+ + +G S ++YL KD L+ S N + VF SG++ +VV + R C+ + P FL P+V + P++ YC+DRSA +Y+RR G+ + ++G + NR+ F+P P GL +++P NGWS +R+P + +L++DSGKL LD LLTR+K +GHRVLIYSQMT+MID+LEE+M YR+H+Y+RLDGSSKIS+RRDMV DFQ+R+DIF FLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQ +QVTVYRL+ KGT+EE+IL RA+EKSEIQ +VISGG K D L+PK
Sbjct: 888 FSFLRFIDISPAEMANLMLQGLLARWLALFLSLKASYRLHQLRSW---GAPEGE------SHQRYLRNKDFLLGVNFPLSFPNLCSCPLLKSLVFSSHCKAVSGYSD----QVVHQRR-SATSSLRRCLLTELPSFLCVASPRVTAVPLDSYCNDRSA--EYERRVLKEGGSLAAKQCLLNGAPELAADWLNRRSQFFPEPAGGLWSIRPQNGWSFIRIPGKESLITDSGKLYALDVLLTRLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIEERILQRAKEKSEIQRMVISGGNFKPDTLKPK 1262 The following BLAST results are available for this feature:
BLAST of TCONS_00023050 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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