TCONS_00023169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023169
Unique NameTCONS_00023169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1470

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023169 ID=TCONS_00023169|Name=TCONS_00023169|organism=Clytia hemisphaerica|type=transcript|length=1470bp
TTAGAAACTGAATACCTTTGATGAAGATCTTATGTATTTTAATGTAATTA
TACACATTTCGATCATCTTTTGATGCTGTCGAAGTATGGATCATAGGGGA
GTTTGGGAACATTGAGGAGTACGGAACATAAGGGAGTAAAGAAATAAtgg
aaatttagaaatttgagGGGGGTCCGTGTTTTCGTAAAAAAGAATGTTCT
TcaataaaagttgatttatgTGCCTAcatttatatttaaaatatatttcc
aaTTAGACAATTAGTGCCCTCACCATGCAACtgaaattgaatgaaaatga
cAATGAGGGAATATTGTATTATCAAACATTTTCACTTTTTGTgtataata
tcttttttttatcaAGGTTTAGTAAAATCTAATATGCACCAAATTTAATA
CCTTTGAAAATGGCAACAAAACCCAATTTTCTGAAAGTCATCATTCTTGG
GGATGGTGCGGTTGGCAAGAGTGCGTTGATGAACAGATTTGTCAACAACA
AATTCGATAGTCAGTCTTTTCACACAATCGGTGTtgaatttttgaacaaa
gaaaTCACGATATCGAAAGAAAATTATACACTTCAAATATGGGATACTGC
TGGACAGGAGCGATTCAAAAGTTTAAGAACTCCTTTTTATAGgggcTCAG
ATATTTGTTTATTGGTATATGCATTAGATGACGAGCAAAGTTTTTATAAT
TTGGATATTTGGAAGAGAGAATTTTTGTATTATGCTGACATAAAAGACCC
TAACAGTTTCCCATTTGTCTTGTTGGGAAACAAAAGTGATATTGGTGAAG
GCCGGTATGAAGTCAAAGAGGATGACGTAAAGAACTGGTGCCAAGCCAAC
GGAAATATAAAGCACTTTAAGACAAGTGCCAAAGACTCCATAAACGTTAT
ACAAGCTTTTACTGCTTCTGTTGAACGCTGGATAGAGTCAGAATCGAAGT
TAGATGGACAAATGAAGCCATCACCAGGCTATACAAAACAAGTGGATTTA
AATAAACACCAACGTGAAGATAGTGGAAGTTCTAGGTGTTGCtagaaatt
gtttttaaatgtCTTATAATGTCTCTTTATGATGATTGCAGCACAAAATA
AGATCCTTGTTCAGTCAGCTCGTGACAAGTCTTCTAATGGAACATACATG
GATTTAATGAGACCCAGTAATGCTGGCTAAAGCATTTCACAGTTTATTTC
TTGCACTGAGACGCTAGAAACATGTCTTTTTGGTGGAACTCTTTAAGAGG
TCAAACTGTCAGATTGAAGAGACTCTTCCTTACGATGTCAGTTCAGTCGA
CACTCGATAATAACAAAATTGATATCTGTTATTTTCGGTTTTTACCCTTG
TCTTATGATTTTAGTAATAGATTATGATGTATGAATTCATTTGAAATACT
TTTGGTCTTAGTAGCATTAGTaagcagtggcgttgtggcagggggggccg
gggggccatggcccccccag
Run BLAST on NCBI

protein sequence of TCONS_00023169-protein

>TCONS_00023169-protein ID=TCONS_00023169-protein|Name=TCONS_00023169-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MATKPNFLKVIILGDGAVGKSALMNRFVNNKFDSQSFHTIGVEFLNKEIT
ISKENYTLQIWDTAGQERFKSLRTPFYRGSDICLLVYALDDEQSFYNLDI
WKREFLYYADIKDPNSFPFVLLGNKSDIGEGRYEVKEDDVKNWCQANGNI
KHFKTSAKDSINVIQAFTASVERWIESESKLDGQMKPSPGYTKQVDLNKH
QREDSGSSRCC
Run BLAST on NCBI

transcript from alignment at sc0000444:158603..160410-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023169 ID=TCONS_00023169|Name=TCONS_00023169|organism=Clytia hemisphaerica|type=transcript|length=1808bp|location=Sequence derived from alignment at sc0000444:158603..160410- (Clytia hemisphaerica)
TTAGAAACTGAATACCTTTGATGAAGATCTTATGTATTTTAATGTAATTA
TACACATTTCGATCATCTTTTGATGCTGTCGAAGTATGGATCATAGGGGA
GTTTGGGAACATTGAGGAGTACGGAACATAAGGGAGTAAAGAAATAATGG
AAATTTAGAAATTTGAGGGGGGTCCGTGTTTTCGTAAAAAAGAATGTTCT
TCAATAAAAGTTGATTTATGTGCCTACATTTATATTTAAAATATATTTCC
AATTAGACAATTAGTGCCCTCACCATGCAACTGAAATTGAATGAAAATGA
CAATGAGGGAATATTGTATTATCAAACATTTTCACTTTTTGTGTATAATA
TCTTTTTTTTATCAAGGTTTAGTAAAATCTAATATGCACCAAATTTAATA
CCTTTGAAAATGGCAACAAAACCCAATTTTCTGAAAGTCATCATTCTTGG
GGATGGTGCGGTTGGCAAGAGTGCGTTGATGAACAGATTTGTCAACAACA
AATTCGATAGTCAGTCTTTTCACACAATCGGTGTTGAATTTTTGAACAAA
GAAATCACGATATCGAAAGAAAATTATACACTTCAAATATGGGATACTGC
TGGACAGGAGCGATTCAAAAGTTTAAGAACTCCTTTTTATAGGTAGGTCT
TACATCAGAAGAGTTCTTTTTATTTTCAAAATGTAAAGCAAGTCAGCAAG
TAGATACTTTGTTGATTGTAACTATTCTCAGAAGAGAGGGCTTCAAAGAA
AAAAGGTTTTACAAAATTTATGTACTGAACTTTGGTTCTTTCAGTATTCT
ATAGACTATGTTTACGTGCAAGCTCTGCTAAAAGGCTCATCACAAGCTAC
TTTAAGACTCAGTCAAAACTTAATGTTTTGAGCACCCTTGTGATAACAGC
AGTTGCTTACCCGGACTGTACGAAACACGTGTCTGAGGATAGTTATTTCA
AATCTAACAAATATTGTTTTTTATTTTCAGGGGCTCAGATATTTGTTTAT
TGGTATATGCATTAGATGACGAGCAAAGTTTTTATAATTTGGATATTTGG
AAGAGAGAATTTTTGTATTATGCTGACATAAAAGACCCTAACAGTTTCCC
ATTTGTCTTGTTGGGAAACAAAAGTGATATTGGTGAAGGCCGGTATGAAG
TCAAAGAGGATGACGTAAAGAACTGGTGCCAAGCCAACGGAAATATAAAG
CACTTTAAGACAAGTGCCAAAGACTCCATAAACGTTATACAAGCTTTTAC
TGCTTCTGTTGAACGCTGGATAGAGTCAGAATCGAAGTTAGATGGACAAA
TGAAGCCATCACCAGGCTATACAAAACAAGTGGATTTAAATAAACACCAA
CGTGAAGATAGTGGAAGTTCTAGGTGTTGCTAGAAATTGTTTTTAAATGT
CTTATAATGTCTCTTTATGATGATTGCAGCACAAAATAAGATCCTTGTTC
AGTCAGCTCGTGACAAGTCTTCTAATGGAACATACATGGATTTAATGAGA
CCCAGTAATGCTGGCTAAAGCATTTCACAGTTTATTTCTTGCACTGAGAC
GCTAGAAACATGTCTTTTTGGTGGAACTCTTTAAGAGGTCAAACTGTCAG
ATTGAAGAGACTCTTCCTTACGATGTCAGTTCAGTCGACACTCGATAATA
ACAAAATTGATATCTGTTATTTTCGGTTTTTACCCTTGTCTTATGATTTT
AGTAATAGATTATGATGTATGAATTCATTTGAAATACTTTTGGTCTTAGT
AGCATTAGTAAGCAGTGGCGTTGTGGCAGGGGGGGCCGGGGGGCCATGGC
CCCCCCAG

Coding sequence (CDS) from alignment at sc0000444:158603..160410-

>TCONS_00023169 ID=TCONS_00023169|Name=TCONS_00023169|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000444:158603..160410- (Clytia hemisphaerica)
GGGCTCAGATATTTGTTTATTGGTATATGCATTAGATGACGAGCAAAGTT
TTTATAATTTGGATATTTGGAAGAGAGAATTTTTGTATTATGCTGACATA
AAAGACCCTAACAGTTTCCCATTTGTCTTGTTGGGAAACAAAAGTGATAT
TGGTGAAGGCCGGTATGAAGTCAAAGAGGATGACGTAAAGAACTGGTGCC
AAGCCAACGGAAATATAAAGCACTTTAAGACAAGTGCCAAAGACTCCATA
AACGTTATACAAGCTTTTACTGCTTCTGTTGAACGCTGGATAGAGTCAGA
ATCGAAGTTAGATGGACAAATGAAGCCATCACCAGGCTATACAAAACAAG
TGGATTTAAATAAACACCAACGTGAAGATAGTGGAAGTTCTAGGTGTTGC
TAGATGGCAACAAAACCCAATTTTCTGAAAGTCATCATTCTTGGGGATGG
TGCGGTTGGCAAGAGTGCGTTGATGAACAGATTTGTCAACAACAAATTCG
ATAGTCAGTCTTTTCACACAATCGGTGTTGAATTTTTGAACAAAGAAATC
ACGATATCGAAAGAAAATTATACACTTCAAATATGGGATACTGCTGGACA
GGAGCGATTCAAAAGTTTAAGAACTCCTTTTTATAGGGGCTCAGATATTT
GTTTATTGGTATATGCATTAGATGACGAGCAAAGTTTTTATAATTTGGAT
ATTTGGAAGAGAGAATTTTTGTATTATGCTGACATAAAAGACCCTAACAG
TTTCCCATTTGTCTTGTTGGGAAACAAAAGTGATATTGGTGAAGGCCGGT
ATGAAGTCAAAGAGGATGACGTAAAGAACTGGTGCCAAGCCAACGGAAAT
ATAAAGCACTTTAAGACAAGTGCCAAAGACTCCATAAACGTTATACAAGC
TTTTACTGCTTCTGTTGAACGCTGGATAGAGTCAGAATCGAAGTTAGATG
GACAAATGAAGCCATCACCAGGCTATACAAAACAAGTGGATTTAAATAAA
CACCAACGTGAAGATAGTGGAAGTTCTAGGTGTTGCTAGATGGCAACAAA
ACCCAATTTTCTGAAAGTCATCATTCTTGGGGATGGTGCGGTTGGCAAGA
GTGCGTTGATGAACAGATTTGTCAACAACAAATTCGATAGTCAGTCTTTT
CACACAATCGGTGTTGAATTTTTGAACAAAGAAATCACGATATCGAAAGA
AAATTATACACTTCAAATATGGGATACTGCTGGACAGGAGCGATTCAAAA
GTTTAAGAACTCCTTTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013024XLOC_013024Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023169-proteinTCONS_00023169-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023169-exon-sc0000444-1575043694:159769..160410TCONS_00023169-exon-sc0000444-1575043694:159769..160410Clytia hemisphaericaexon
TCONS_00023169-exon-sc0000444-1575043694:158603..159430TCONS_00023169-exon-sc0000444-1575043694:158603..159430Clytia hemisphaericaexon
TCONS_00023169-exon-sc0000444-1510915933:159769..160410TCONS_00023169-exon-sc0000444-1510915933:159769..160410Clytia hemisphaericaexon
TCONS_00023169-exon-sc0000444-1510915933:158603..159430TCONS_00023169-exon-sc0000444-1510915933:158603..159430Clytia hemisphaericaexon
TCONS_00023169-exon-sc0000444-1491911889:159769..160410TCONS_00023169-exon-sc0000444-1491911889:159769..160410Clytia hemisphaericaexon
TCONS_00023169-exon-sc0000444-1491911889:158603..159430TCONS_00023169-exon-sc0000444-1491911889:158603..159430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000444supercontigsc0000444:158603..160410 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
62.6276	58.8221	20.8653	14.3673	25.7241	18.5886	22.1008	25.1604	31.3426	26.5476	28.0196	18.7	19.8154	16.6144	27.5901	31.3229	28.7028	27.0166	21.6233	35.6464	32.5066	31.0079	59.2268	55.928	22.6552	29.0348	45.8694	35.5723	55.4283	51.9549
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
[Close]
BLAST of TCONS_00023169 vs. Swiss-Prot (Human)
Match: RAB9A (Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9A PE=1 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 4.935e-76
Identity = 116/211 (54.98%), Postives = 149/211 (70.62%), Query Frame = 2 
Query:  410 MATKPNFLKVIILGDGAVGKSALMNRFVNNKFDSQSFHTIGVEFLNKEITISKENYTLQIWDTAGQERFKSLRTPFYRGSDICLLVYALDDEQSFYNLDIWKREFLYYADIKDPNSFPFVLLGNKSDIGEGRYEVKEDDVKNWCQANGNIKHFKTSAKDSINVIQAFTASVERWIESESKLDGQMKPSPGYTKQVDLNKHQREDSGSSRCC 1042
            MA K +  KVI+LGDG VGKS+LMNR+V NKFD+Q FHTIGVEFLNK++ +     T+QIWDTAGQERF+SLRTPFYRGSD CLL +++DD QSF NL  WK+EF+YYAD+K+P SFPFV+LGNK DI E   +V  ++ + WC+ NG+  +F+TSAKD+ NV  AF  +V R + +E + D        +  Q D     R+   SS CC
Sbjct:    1 MAGKSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE--RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLATEDRSD--------HLIQTDTVNLHRKPKPSSSCC 201
The following BLAST results are available for this feature:
BLAST of TCONS_00023169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB9A4.935e-7654.98Ras-related protein Rab-9A OS=Homo sapiens GN=RAB9... [more]
back to top