TCONS_00023189 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023189
Unique NameTCONS_00023189
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length467

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023189 ID=TCONS_00023189|Name=TCONS_00023189|organism=Clytia hemisphaerica|type=transcript|length=467bp
GAGAGGgagaaaatttgttttaaagattgaaagaaacatGTATGTAGAGa
gatataaaaattaaaacaaaatggcAAGTTTTAACCCCAAACAATTTGGT
TACAATGTTACTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAATTC
TGATCAAAAGGAGTTTGCTGGAGGAATCGATAAGGATGACATCACATGCG
CAATTTGTCATTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCGGT
CATCGTTTTTGCAAAAACTGTATCAGTCAATTTCATCAAACCAATCCAGC
AAAATGCCCAATGGACTGGAAAACTATTCAGgtttttcCAGATATTGGCA
AGAAGCGAGAGATTTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAA
GGATGTGATTGGCAGAACGAGATCAGAGAAGAAGAGAACCATTTGCAGAA
TTGTGGATATCAGAGAA
Run BLAST on NCBI

protein sequence of TCONS_00023189-protein

>TCONS_00023189-protein ID=TCONS_00023189-protein|Name=TCONS_00023189-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
MASFNPKQFGYNVTFVGEEKKTSVLNSDQKEFAGGIDKDDITCAICHLIL
RDPVQAVDCGHRFCKNCISQFHQTNPAKCPMDWKTIQVFPDIGKKREILS
LQIRCQNHEEGCDWQNEIREEENHLQNCGYQR
Run BLAST on NCBI

transcript from alignment at sc0000446:62611..69762-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023189 ID=TCONS_00023189|Name=TCONS_00023189|organism=Clytia hemisphaerica|type=transcript|length=7152bp|location=Sequence derived from alignment at sc0000446:62611..69762- (Clytia hemisphaerica)
GAGAGGGAGAAAATTTGTTTTAAAGATTGAAAGAAACATGTATGTAGAGA
GATATAAAAATTAAAACAAAATGGCAAGTTTTAACCCCAAACAATTTGGT
TACAATGTTACTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAATTC
TGATCAAAAGGAGTTTGCTGGAGGAATCGATAAGGATGACATCACATGCG
CAATTTGTCATTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCGGT
CATCGTTTTTGCAAAAACTGTATCAGTCAATTTCATCAAACCAAGTGAGT
CTTTTACAATAAACTTTATCGGTAGAAGATTCGTCGGTAAAAAGTGACAC
AAAAATCGCTTTGTGACGAATTTTAATACCGATGACTTTTTTAAACGAAT
GATCGATTGATGTCGAAAAATTATTTCTAAAAATGATTCTAAGCATAAAA
ATAAGCGTTCAAAGTTTTGATTGTTCTTATCCTCAATTCCTCTGAAAACC
GATGTTACTCAATGTATAGGTTTAAAAAATCGTCGGCAAAATATCCGTCA
ATAACAACTGACGAAATTTCCGACAAGTGACGAAATTTTTTAACGATAAG
ATACTTGTTGTTGATAAATAAAACACCGAAGGTTGTATCGTTAAAAGTCG
AACCGCTTTATGAAGGGGTTAGCTCTTATGCCTCCAAGTATCAAACCAAA
GCCCCAATGAAGTTATAAATAACATGAGACTGACAGATAAAACTTTGTAT
TGAGGAGGTCAATTTTAATAGGAGTTTTTTTCTTCTTTTTTCTAGTCCAG
CAAAATGCCCAATGGACTGGAAAACTATTCAGGTATATCTTAGAAGCCTT
TTTGAGGTCAAGTTTCAAAATAATTTTTGCAATTGTTTCTTGGTGTTTGT
ATAACATGATGAATATATTTTAATGCCAAAAGTTTCCTGCTAAATAAACT
CGAAAAGTTAGACTAATTCAAGACAAACTACCAGCGGAGAAGACAACCTG
ATCTTTAGTTGGCAAAAAAAATCACAGGAAATGTTTTTGAATGAAATGGC
TCAAGAAAATTTTGACGAATTAGCCAAAATAAATTCCTAGCGGAAATCTA
GTTTCGCGAAAATTGAAAGGCCATCATCTGTGAAAATTGAGTTGAAATCA
AGTGAAATACTGGGACATTTATTCTTTTTAGATTTTTCCAGATATTGGCA
AGAAGCGAGAGATTTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAA
GGATGTGATTGGCAGAACGAGATCAGAGAAGAAGAGGTAAAAAATAAATC
TAGCAAACCTTTAGTATACTGTAAACGTTTTTTTATAAAAACATTTTTTA
AGCCTTGGGATGTTTTTATTTTTGCCATTTTTTTGAGTATTTCTGTCCAT
TTTCCTAAGAAACTCGGTGCTTTGAGAGTCCGCATAACCTTAAAATGTTC
TTAATTTGTTCTTAACAATCTTCTTATATAGTTGATTCTTAAAAAAAAAA
ATGTATTTCAAAGACTCCAAACAATCATATCATCAGTTGTTAACACCTTT
TGCATATATTCCCATATTAATTGACTGGAAATTAAATGGCAGCAGCTTCT
TGATGTTTTAGCCCCCACCCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCC
CCCCCCGCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCGCCCCC
CCCCCCCCCCCCCGCCCCCCCCCCCCCCCCCCGCCCCCCCCCCCCCCCCC
CGCCCCCCCCCCCCCCCCCCCTTGGACAAGAAGGCCCCCCTTCCACGATA
GACTTTTATTCAATATTTTAATAACATTTCTTTCCAGAACCATTTGCAGA
ATTGTGGATATGAGAGAGTTTCTTGCGAATTGAAATGTGGCGAAGATATT
TTGCAGAAAAATGTATGTCATAAAAAAAAGAAAAATTTTATTTTTAGATA
ACTTTCTCTTCTATTTGCCATTTTTACCAAATCCCTGTTCCATTTTTTTA
GGCGAACCTTAACTTAAAAAACTATTTCAAGCTTAGCTTCTTTTAAAAAC
CAAGCTATTATTTTCCACTCATTTTAATAACAGAAATTTGTTTGATATTT
AGATGCAGAAACATTTGGTGTGGATTTAAAAATTATGGTTGCACATACAA
GGTTAGTAAGTTTTCGATCAGAAATTATTCCACAGGGTAATTCTCAACTT
CAGTTGAGATGATTGGTGTGGTGAGCCTGTCAATAACTGAAGCATTGTCA
ATTTTCGATTTAAAGTTGTGCATTTTAATGTACGAATATCTTATCGGACT
TTATACGCTTCCCATTTTTTTTGGCATATTTATCAAAGTTTGTAAACTTC
AAAGAGTTACAGGCTGTTTCATTTCTTTTTAGGGAGCAAGATTGTCATTG
GACGAGCACAACACTAAATCACAGTACAAACATTTGTCCATGAAAATGGA
ACACGAAATCCAAAAAGTAAAGAATGATTGCGAAGAAAAATTGAAGGAAA
AAGATCAGGAGATTCAGGACTTGAAAGAAAATTTTTTACGAAATAAAAAT
CAATTGATGTCTGAAATTTTGACAACACCGCGATGCCCATACACTTTTTT
GATGGAAAATTTCAAAACAGAGTTTGATAAAGCTAAGATTTCAAATGACA
GAATTCTTTCACCGGGATTCTTCACAGAGAAAGGATATAAAGGAGGCTTG
TGTGTTTATCTAAATGGTTACGGTAAAAACACTCATATAACTGCTCGCTT
TCAAAATATAAAAGGACCGTATGACGATTTGTTGAGATGGCCAATGCCTT
GGAAATCATTCAAACTCACTCTTCTAATCAACGATAAAGAAGTTGCGAAA
AGGCCACTTATGAGTACGGATGCAGAAGGGATATATAAAGACCATTTCAC
ACGACCAACTGGTGATGATAGAGTCAAATCATTGGGGATATCTAAGACTT
TTGCACACGAATTAGTAAAAGAAGTTACTAATAATGACAAGGTTGCCATA
AAATTCGAAATGGAATGATAAGGAAGAAAAAAAGAAATAAATTCAAATTA
AAAGACTAATGTGGACAAAATTTGAAATAAGGATAAGCGAACAAGACGCC
TGAAAATTTTCAATTGCGGTTTACGCAATGGTGAAGATATGACCATGAAG
CTAAAATTAAAAGACAAAATTTTAGAGAAGTTGTAGTAGAGTATAATCTA
AATAAGTTTGAGTTTATCGACCCAGTGATATCNAACTTCTTTTATTCGTC
TAAATAAGTTTGAGTTTATCGACCCAGTGATATTCATATTGGAAATTTAT
CGTGGCTTGGATCACGAGATTTACGTTTGGCTACGTTTCGAGAGATTCTT
CTCCCATCATCGGGCAATGTGGAGGTCAAATACATTTTTTAAGACAAACC
ATTTCTGCAGCTAGCACCATGTAAAATAAGACATTTAACTTTGTGGCGTC
TTAGTTAATTTTTTTTTCAAAACAACTTTTTTCTTAGCACCCATTTATGT
CATCAACGATTTATTCACCGTTGGAAAAATTTAAATATTTTCAAATTTAA
TTTTTTTTGAAAATTGAAATCGAATTTAGCATTTAGGATGTTTTGTTGTA
AAAAATTATGGTCAATTATGGACAAAAGGTTTGTAGACTTCTGCCATAGT
TGCAAAATACTTCAACATCGATCAAAAACAAGTTCCCAAGAGGTTCTGGG
TGCTTTCCAAACCCATCCAAAGCTGTTCAAAGTCTTTCAAAGTCACCCAC
TGCAGTCTAACCACAAGGACTTGATTAACTGGCTTACACCAGTATCAAAA
CGCTGATTTTTTGCTTGTGGTTCTCTCAAAAGCAATTCAAAAGCAATGCA
ACGACTTCAAAAGTGTTTTTCTTAACTTCCATCCCCTTTAAGACACATTG
AAGAGTCATTTTACACTATTTCTCATCATTTTTTTACTGAAATTTCATTT
GTCTACAACCTTTTGTCCATGATTGTAAGTTATCGGTTCGTTGCTATTAC
ATTAGTTCGTATCAGACGAAGGGGCGAAATAAAAAGCATGGGTTTGGGCT
ATGAGATTGAATTTCCCAGCTCCAAAGGACAGTTGAAAGCACAGCCAATC
AAATTTTGTTATTCTTTCACTGATCACACTTTCTTAGAAAAAAATAAGTT
CTTAAGGTTGTTTTAATTTTTAGTAGGTGAAGACAGGGCTAAATTCGAAT
TTCCTACTGTGCGAATTAATGGAATAGTACTGCCTTGACTCAGCTACAGT
CGTTCTCAATCTCTAAACCAACCTTTTAATTTTGTGAGAATTTTAAAGCT
TTACATACATCTACAAAGAGATGATTAGCCAGCAAATCAAAAGAACAGTG
GAAATCCAAAGATTTCTTTTAGGTAATCAACTATTATTCTGGACCAAGCT
TAATTATGATGAGATCAAATTAAAATCAAAATGATGCTATATATATGATG
ATGTATGATATGCTTGCTATATTGGTTTCGAAGTGATCTGAGAGTTTTAT
GTGGAATGTAATCCATAAGAAAGTAAATACATCGAGAGGGAGAGAATTTG
TTTTAAAGATTGAGGGGAGCATGTATGAAGAGAGATATTAAAATTAAAAC
AAAATGGCAAGTTTTAACCCCAAACAATTTGGTTACGATGTTACTTTCGT
TGGGGAGGAGAAAAAAACATCTGTACTTAATTCTGATCAAAAGGAGTTTG
CGGGAGGAATCAATAAGGATGATATCACATGCGCAATTTGTCATTTGATT
TTGAGAGATCCCGTTCAAGCAGTAGACTGCGGTCATCGTTTTTGCAAAAA
CTGCATCAGTCAATTTCATCAAACCAAGTGAGTTCTTAAGGCTTGGAGAC
ACAAGAAGTTTTATTCGCGTTGTTGCAATACAACATGCTCCATCCCACCA
ACCTGAAACGCTTTCTCGTGCCTCCACCCCATTCTTCCTTCTACCAATAA
AAGTGAAGTCTCACTTTTGTCCCAGGGACAAAATCAGTCTTTTGGGTATT
TCCCTCACTTTTTGTCCCTTGAAACAGAAAAAAAACAACCATGAGAAAGC
GTTTCAGGTTGGTGGGATAGAGCATGTTGCACTGCACCAACGCGAAAAAA
ACTTCTCGTGTACCCAAGCCTTTACAATAAACTTTATCGGTAGAAGATTC
GTCGGTAAAAAGTGACGAAAAAATCGCTTTGTGACCAATTTTAATACCGA
ATGGTCGATTGATGTCGAAAAATTATTTCTAAAAATGATTCTATAAGCTA
CTTTAAAAGCGTTCAAAGTTTAGAATGTTCTTATCCTTAATTCCTCTGAA
AACCAATGTTACTCACTACGTTCGGGCTATTTTGAAATGTTTTCAATGAA
CCTCAGGGTTATTAATCCCAAATCACCCTCTAAACCATGTTATTACTAGT
ACAAATAGGTTTAAAAAATCGCCGGCAAAATATCCGTCAACAATAACTGA
TGAAATCTCCGACAAGTGACGAAATTTTTTAACGACAAGATACTTGTTGT
TGATAAATAAAACACCGAAGGATGTATCGTTGAACGTCAAACAGCATTAT
GAAGGGGTTAGCTCTTATGCCTCCAAGTATCAAACCAAAGCCCCAATGAA
GTTATAAATAACATGAGAGTGACAGATAAAACTTTGTATTGAGGAGGTCA
ATTTTAATTGGAGCCCTTTTCTTCTTCTTTTCTAGTCCAGCAAAATGCCC
GATGGACCGGAAAACTATTCAGGTATACCTTAGAAGCCTTTTTCAAGTTT
CAAAATAATTTTTGTGATTGTTTCTTGGTTCATATAGAACATACTTTAAT
GTCCAAAGATTTCCTGTTAAATAAACTTGACAGGTAAGGCTACTTTAGGT
GTACAAACTTTCGCGAGCAGAAACTTTCGCGAGGACGAAAAATCGCGAAA
TTCACGACATTTACTTTCGCGAATTTAACGGGAAAATATTTTTCGCGAGC
ATAAACTTTTGCGAATCAAGACGTAAAATTGAGAATTTTCACATAAAAAA
TGGCTTAGAAGGACAAATACTTCTTGGATTGGCTTGAAACATTTGTCCTT
TGACTTATTAGTCTTTTTAGCAGGCAAAAAAGTACCATAAAAGTTACATT
TTATTCAAAGTTTGAAGTTTTACAGATTTTCTATTTTGTCCAGAATTTTT
CGCGAGCATAAACTTTCGCGAATGGCCCTTCCTAGAATTTTTAAATACAT
TTACCTTTGCAAAAAGGGCCAAAACTCGCGAAAATCACGAAAATTTCTGT
TTGCGAAGATTTATACGCCTAAAGTAATCCAAGACAAAATACAGGCAGAA
CATCCAGTTAAACTCATGTTTTGATGTTTAGTTGGCAAAAGAAATCACAA
AAAATGATTTTGAATGGAATATCTCAAAGGAATAAATTTAGAATAAATTC
CTAGCGGGAATCTAGCTTCGGGAACATTGAAAAGTGGCCATTTATGAGTA
GAAATCAAGTAAAAAACTCGGACATTGAAAAAAAATATTATTTTTAGGTT
TTTCCAGATATTGGCAAGAAGCGAGAGATTTTGAGTTTACAAATTCGTTG
TCAAAATCACGAAGAAGGATGTGATTGGCAGAACGAGATCAGAGAAGAAG
AGGTAAAAAATAAATCTAGCAAACCTTTAGTATACTGTAAACGTTTTTTT
ATAAGAACATACAAAATTTTTTAAGCCCCCAAGGCTGTTCTTATTTACGC
CATTTTTTGAGTATTTTTGTCCATTTTCCTAGGTGTTTCAGAATCCGCAT
AACCTCAAAATGTTCTTAACTTGTTCTTAACAATTTGGCCATCGAAGCCT
TATCTTCTTATAGAGTTGGTTCTTATAAAAAACGTGTTATAGCACAGTTC
TTATAAAAACGTGTTACACTGTCCTTTTAAACAAGCATATCATCAGTCGT
TACACCTTTTGCATATATTCCCGCCTTAATTGAATGGAAATTAAATTAAA
GCCTCTTGACCTTTCAACCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCTCCCCCCCCCCCC
CCCCCTTACGCAAGGGGGCCCTTATGCCACGATAGACTTCTATTCAATCT
TTCAATAACATTTCCTTCCAGAACCATTTGCAGAATTGTGGATATCAGAG
AA

Coding sequence (CDS) from alignment at sc0000446:62611..69762-

>TCONS_00023189 ID=TCONS_00023189|Name=TCONS_00023189|organism=Clytia hemisphaerica|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000446:62611..69762- (Clytia hemisphaerica)
AACCATTTGCAGAATTGTGGATATCAGAGAGTTTTTCCAGATATTGGCAA
GAAGCGAGAGATTTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAAG
GATGTGATTGGCAGAACGAGATCAGAGAAGAAGAGTCCAGCAAAATGCCC
AATGGACTGGAAAACTATTCAGATGGCAAGTTTTAACCCCAAACAATTTG
GTTACAATGTTACTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAAT
TCTGATCAAAAGGAGTTTGCTGGAGGAATCGATAAGGATGACATCACATG
CGCAATTTGTCATTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCG
GTCATCGTTTTTGCAAAAACTGTATCAGTCAATTTCATCAAACCAAAACC
ATTTGCAGAATTGTGGATATCAGAGAGTTTTTCCAGATATTGGCAAGAAG
CGAGAGATTTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAAGGATG
TGATTGGCAGAACGAGATCAGAGAAGAAGAGTCCAGCAAAATGCCCAATG
GACTGGAAAACTATTCAGATGGCAAGTTTTAACCCCAAACAATTTGGTTA
CAATGTTACTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAATTCTG
ATCAAAAGGAGTTTGCTGGAGGAATCGATAAGGATGACATCACATGCGCA
ATTTGTCATTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCGGTCA
TCGTTTTTGCAAAAACTGTATCAGTCAATTTCATCAAACCAAAACCATTT
GCAGAATTGTGGATATCAGAGAGTTTTTCCAGATATTGGCAAGAAGCGAG
AGATTTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAAGGATGTGAT
TGGCAGAACGAGATCAGAGAAGAAGAGTCCAGCAAAATGCCCAATGGACT
GGAAAACTATTCAGATGGCAAGTTTTAACCCCAAACAATTTGGTTACAAT
GTTACTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAATTCTGATCA
AAAGGAGTTTGCTGGAGGAATCGATAAGGATGACATCACATGCGCAATTT
GTCATTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCGGTCATCGT
TTTTGCAAAAACTGTATCAGTCAATTTCATCAAACCAAAACCATTTGCAG
AATTGTGGATATCAGAGAGTTTTTCCAGATATTGGCAAGAAGCGAGAGAT
TTTGAGTTTACAAATTCGTTGTCAAAATCACGAAGAAGGATGTGATTGGC
AGAACGAGATCAGAGAAGAAGAGTCCAGCAAAATGCCCAATGGACTGGAA
AACTATTCAGATGGCAAGTTTTAACCCCAAACAATTTGGTTACAATGTTA
CTTTCGTTGGGGAGGAGAAAAAAACATCTGTACTTAATTCTGATCAAAAG
GAGTTTGCTGGAGGAATCGATAAGGATGACATCACATGCGCAATTTGTCA
TTTGATTTTGAGGGATCCTGTTCAAGCAGTAGACTGCGGTCATCGTTTTT
GCAAAAACTGTATCAGTCAATTTCATCAAACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013040XLOC_013040Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023189-exon-sc0000446-1575043694:69469..69762TCONS_00023189-exon-sc0000446-1575043694:69469..69762Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1575043694:68931..68967TCONS_00023189-exon-sc0000446-1575043694:68931..68967Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1575043694:63161..63265TCONS_00023189-exon-sc0000446-1575043694:63161..63265Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1575043694:62611..62641TCONS_00023189-exon-sc0000446-1575043694:62611..62641Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1510915933:69469..69762TCONS_00023189-exon-sc0000446-1510915933:69469..69762Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1510915933:68931..68967TCONS_00023189-exon-sc0000446-1510915933:68931..68967Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1510915933:63161..63265TCONS_00023189-exon-sc0000446-1510915933:63161..63265Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1510915933:62611..62641TCONS_00023189-exon-sc0000446-1510915933:62611..62641Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1491911889:69469..69762TCONS_00023189-exon-sc0000446-1491911889:69469..69762Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1491911889:68931..68967TCONS_00023189-exon-sc0000446-1491911889:68931..68967Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1491911889:63161..63265TCONS_00023189-exon-sc0000446-1491911889:63161..63265Clytia hemisphaericaexon
TCONS_00023189-exon-sc0000446-1491911889:62611..62641TCONS_00023189-exon-sc0000446-1491911889:62611..62641Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023189-proteinTCONS_00023189-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000446supercontigsc0000446:62611..69762 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.137511	0.134095	0.46709	0.201611	1.85441	3.51691	5.83412	6.28939	1.73816	2.48354	0.975217	2.38111	7.59068	7.02822	2.57674	2.68144	4.02592	2.75096	6.57796	7.03632	3.19087	4.08554	1.47274	2.29347	3.24806	5.66587	0	0.20123	1.08431	1.24401
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00023189 vs. Swiss-Prot (Human)
Match: TRAF4 (TNF receptor-associated factor 4 OS=Homo sapiens GN=TRAF4 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.521e-17
Identity = 35/96 (36.46%), Postives = 52/96 (54.17%), Query Frame = 2 
Query:  182 KDDITCAICHLILRDPVQAVDCGHRFCKNCISQFHQTNPAKCPMDWKTI---QVFPDIGKKREILSLQIRCQNHEEGCDWQNEIREEENHLQNCGY 460
            K  + C +C   +R+PVQ   CGHRFC  C+ +F      KCP D   +   +++PD   + ++L L IRC + EEGC W   +R  + HL  C +
Sbjct:   13 KRRLLCPLCGKPMREPVQVSTCGHRFCDTCLQEFLSEGVFKCPEDQLPLDYAKIYPDPELEVQVLGLPIRCIHSEEGCRWSGPLRHLQGHLNTCSF 108
The following BLAST results are available for this feature:
BLAST of TCONS_00023189 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF44.521e-1736.46TNF receptor-associated factor 4 OS=Homo sapiens G... [more]
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