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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023227 ID=TCONS_00023227|Name=TCONS_00023227|organism=Clytia hemisphaerica|type=transcript|length=2238bp
GGTTGGCCAGTTGCATTAAAAAAACTTCTTTGTCAAGGATATAATAATTG
CAGAGGTGACAGATTTAGATTTTGGGTGTTAAGTATTCTAATGTgtacaa
ttttattttattttcattcatagtttattttaataaaaattgtcCAAACA
AACAACAAATCTGGCACCTGTCGCAGTGAAGAGTTCTGCAAGATTTGCAC
CCTACAGCCAAACCAAAGGGCCCTCCATGGATGTGAAAACTTTTGACGAG
AAACGAAACTTAATAGTCAACTATTTACCATCAAATCTGACTCAAGATGA
AGTGCAACGTTTATTCAGTCGTATCGGCCCTGTATCAAATTGTAAATTGA
ttagaaattttgagtctggtcAAAGTTTGGGTTATGCTTTCATTGAATAT
CCCTCAGAGAATCTAGCTCTTGAAGCAATCAATACTCTAGATGGGACCAA
AATGGAAGGTAAAACCTTGAAAGTCAGCTATGCACGTCAGTCTTCACCTG
ATATTAAAAACTCGAATGTTTATGTAGCTGGACTACCTGATCACATTTCT
GAAAATGATCTCTATACACTTTTTACACCGTTCGGTAAAATCATCACACA
CAAACTTTTAACAAACTCTGACAAAACTTCTAAAGGTGTTGGTTTTGTTC
GCTACTCTTTGAAATCAGAAGCACAGAATGCCATAGAGTGTATGGGTGGC
AAGGTACTAGACAAATGCAAAACACCATTAACAGTAAAATTAGCTATCCC
ACCAgtatctaaacaacaaaattctCTATTGGCATCAACTTCGCAAATCA
ATGCAATGGCTGGTATCCCAGGTGTCAGTGCCTTGAGAGGTAGCCTACGT
TTTAACCCTTTAGCACCATCAAACCAAGCTATCACACATACAGGTCAAGT
GTTGTCTGCTATCTCATCATTGGAGCAACAAACCTTAAGTCCAATTGCTA
GCCCTGCGCTCATTCAACTCAAAACAACACAACAAGTCATCCCCAATGCC
ACAACAGCGTCTCTGACACCTGCTTCTGCTTCACAAGCTTTCACTATTTA
TATATACGGTTTACAAGTACATCATAATGAGCTACACTTGTATGAGCTGT
TCGCACCTTTTGGTGCCATCTTGAATGTTAAACTGATccgtgatttaaaa
aaagaagacaagCCAAGCAAAGGGTATGGCTTTATCAATTTCCGTAAATA
CGAAGACGCCCTTGCCGCCATCAACTCCTTAAACAACCAAGTATTAGAAG
GCAAAGTTTTGCAAGTTTCTTTCAAGAATGCAGCAACTATGGGTCTTGCA
ACAGTCCAACAGCAACACCAACAACAAGCTATTTTATCATCAGCTGGTCT
ACAACCAAGTCTACAACAACAGCAACCACAATTCCAAGCCAGGCCCCACA
TTCctcaccaccaccaccaccaccaccatcaACAACAGCATCATCATTTA
GCAGCAGCAGGTCTTCCACATCACGATTCATCCCCGTTGTTCTCCAATTT
CCACCACATGAAATATCCAAATTGAAAGTGTGACACTAATGGTTGTTTCA
TTACAATAAGAAACACACAAAATACGAGACCAtgtttttttgagatttca
TTCATGATGGTTTCAGGGTAAAGAAGGTATGATACTATACATTGAGGGAC
TTTTGGAGTAAGGTGTAACTGTTACTAAACTTATACTTTGATTTTTACAA
ATCGTTACGAAGCAAGGTTTTGCTTTTATAAAGTTATACTTTAAAAGTTT
GAACACACGAGAtaattcatttatttacttacTTCATATTAACATTATGA
TATAATTTTCttgagttattattttttagataGTAGATAATTTTTACTTA
TTGTTACATTTAGGTATTGTAGGTATTGTAACTggttctaagttaacttt
tattatTCTCTTGATTCGTTATATATTTTTCAGGCAATCGACTAAAAATG
ATgatgaaagatgaaaatttgcttaaattGATTACTTCGTTTTTCTATGT
ATTATTGATATTAATTACTTGCACTTCCATGTTAAAGATATGTTTTTGCT
CTGCATAAGCGCAGATTCGATAAGAGATTAATGTAATTTGCTGCATTGTT
TTGTTTCTGTTCGATAGGTTTGGCCAAACGAAATCatgtaataaacaaaa
aaaactttttaccatCTTCCTCTTTGTGGATAATCAATTTATGATGTTAA
TTACATTTTTCCTTACTTTTATTACTAATTATTATTTG Run BLAST on NCBI transcript from alignment at sc0000447:132873..135110- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023227 ID=TCONS_00023227|Name=TCONS_00023227|organism=Clytia hemisphaerica|type=transcript|length=2238bp|location=Sequence derived from alignment at sc0000447:132873..135110- (Clytia hemisphaerica)
GGTTGGCCAGTTGCATTAAAAAAACTTCTTTGTCAAGGATATAATAATTG
CAGAGGTGACAGATTTAGATTTTGGGTGTTAAGTATTCTAATGTGTACAA
TTTTATTTTATTTTCATTCATAGTTTATTTTAATAAAAATTGTCCAAACA
AACAACAAATCTGGCACCTGTCGCAGTGAAGAGTTCTGCAAGATTTGCAC
CCTACAGCCAAACCAAAGGGCCCTCCATGGATGTGAAAACTTTTGACGAG
AAACGAAACTTAATAGTCAACTATTTACCATCAAATCTGACTCAAGATGA
AGTGCAACGTTTATTCAGTCGTATCGGCCCTGTATCAAATTGTAAATTGA
TTAGAAATTTTGAGTCTGGTCAAAGTTTGGGTTATGCTTTCATTGAATAT
CCCTCAGAGAATCTAGCTCTTGAAGCAATCAATACTCTAGATGGGACCAA
AATGGAAGGTAAAACCTTGAAAGTCAGCTATGCACGTCAGTCTTCACCTG
ATATTAAAAACTCGAATGTTTATGTAGCTGGACTACCTGATCACATTTCT
GAAAATGATCTCTATACACTTTTTACACCGTTCGGTAAAATCATCACACA
CAAACTTTTAACAAACTCTGACAAAACTTCTAAAGGTGTTGGTTTTGTTC
GCTACTCTTTGAAATCAGAAGCACAGAATGCCATAGAGTGTATGGGTGGC
AAGGTACTAGACAAATGCAAAACACCATTAACAGTAAAATTAGCTATCCC
ACCAGTATCTAAACAACAAAATTCTCTATTGGCATCAACTTCGCAAATCA
ATGCAATGGCTGGTATCCCAGGTGTCAGTGCCTTGAGAGGTAGCCTACGT
TTTAACCCTTTAGCACCATCAAACCAAGCTATCACACATACAGGTCAAGT
GTTGTCTGCTATCTCATCATTGGAGCAACAAACCTTAAGTCCAATTGCTA
GCCCTGCGCTCATTCAACTCAAAACAACACAACAAGTCATCCCCAATGCC
ACAACAGCGTCTCTGACACCTGCTTCTGCTTCACAAGCTTTCACTATTTA
TATATACGGTTTACAAGTACATCATAATGAGCTACACTTGTATGAGCTGT
TCGCACCTTTTGGTGCCATCTTGAATGTTAAACTGATCCGTGATTTAAAA
AAAGAAGACAAGCCAAGCAAAGGGTATGGCTTTATCAATTTCCGTAAATA
CGAAGACGCCCTTGCCGCCATCAACTCCTTAAACAACCAAGTATTAGAAG
GCAAAGTTTTGCAAGTTTCTTTCAAGAATGCAGCAACTATGGGTCTTGCA
ACAGTCCAACAGCAACACCAACAACAAGCTATTTTATCATCAGCTGGTCT
ACAACCAAGTCTACAACAACAGCAACCACAATTCCAAGCCAGGCCCCACA
TTCCTCACCACCACCACCACCACCACCATCAACAACAGCATCATCATTTA
GCAGCAGCAGGTCTTCCACATCACGATTCATCCCCGTTGTTCTCCAATTT
CCACCACATGAAATATCCAAATTGAAAGTGTGACACTAATGGTTGTTTCA
TTACAATAAGAAACACACAAAATACGAGACCATGTTTTTTTGAGATTTCA
TTCATGATGGTTTCAGGGTAAAGAAGGTATGATACTATACATTGAGGGAC
TTTTGGAGTAAGGTGTAACTGTTACTAAACTTATACTTTGATTTTTACAA
ATCGTTACGAAGCAAGGTTTTGCTTTTATAAAGTTATACTTTAAAAGTTT
GAACACACGAGATAATTCATTTATTTACTTACTTCATATTAACATTATGA
TATAATTTTCTTGAGTTATTATTTTTTAGATAGTAGATAATTTTTACTTA
TTGTTACATTTAGGTATTGTAGGTATTGTAACTGGTTCTAAGTTAACTTT
TATTATTCTCTTGATTCGTTATATATTTTTCAGGCAATCGACTAAAAATG
ATGATGAAAGATGAAAATTTGCTTAAATTGATTACTTCGTTTTTCTATGT
ATTATTGATATTAATTACTTGCACTTCCATGTTAAAGATATGTTTTTGCT
CTGCATAAGCGCAGATTCGATAAGAGATTAATGTAATTTGCTGCATTGTT
TTGTTTCTGTTCGATAGGTTTGGCCAAACGAAATCATGTAATAAACAAAA
AAAACTTTTTACCATCTTCCTCTTTGTGGATAATCAATTTATGATGTTAA
TTACATTTTTCCTTACTTTTATTACTAATTATTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023227-exon-sc0000447-1575043694:132873..135110 | TCONS_00023227-exon-sc0000447-1575043694:132873..135110 | Clytia hemisphaerica | exon |
| TCONS_00023227-exon-sc0000447-1510915933:132873..135110 | TCONS_00023227-exon-sc0000447-1510915933:132873..135110 | Clytia hemisphaerica | exon |
| TCONS_00023227-exon-sc0000447-1491911889:132873..135110 | TCONS_00023227-exon-sc0000447-1491911889:132873..135110 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000447 | supercontig | sc0000447:132873..135110 - |
Blast
BLAST of TCONS_00023227 vs. Swiss-Prot (Human)
Match: ELAV3 (ELAV-like protein 3 OS=Homo sapiens GN=ELAVL3 PE=2 SV=3) HSP 1 Score: 221.09 bits (562), Expect = 2.385e-64 Identity = 135/349 (38.68%), Postives = 196/349 (56.16%), Query Frame = 2
Query: 239 TFDEKRNLIVNYLPSNLTQDEVQRLFSRIGPVSNCKLIRNFESGQSLGYAFIEYPSENLALEAINTLDGTKMEGKTLKVSYARQSSPDIKNSNVYVAGLPDHISENDLYTLFTPFGKIITHKLLTNS-DKTSKGVGFVRYSLKSEAQNAIECMGGKVLDKCKTPLTVKLAIPPVSKQQNSLLASTSQINAMAGIPGVSALRGSLRFNPLAPSNQAITHTGQVLSAISSLEQQTLSPIASPALIQLKTTQQVIPNXXXXXXXXXXXXXXFTIYIYGLQVHHNELHLYELFAPFGAILNVKLIRDLKKEDKPSKGYGFINFRKYEDALAAINSLNNQVLEGKVLQVSFKNA 1282
T D K NLIVNYLP N+TQDE + LF IG + +CKL+R+ +GQSLGY F+ Y N A +AINTL+G K++ KT+KVSYAR SS I+++N+YV+GLP +S+ ++ LF+ +G+IIT ++L + S+GVGF+R+ + EA+ AI+ + G+ P+TVK A P K +LL Q +A + R + L + V S +S + + SPIA + L +A + I++Y L +E L++LF PFGA+ NVK+IRD KG+GF+ Y++A AI SLN L +VLQVSFK +
Sbjct: 34 TDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHHQTQRFRLDNL------LNMAYGVKSPLSLIAR--FSPIAIDGMSGLAGVGLS----------GGAAGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNK--CKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSFKTS 362
The following BLAST results are available for this feature:
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