TCONS_00023239 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023239
Unique NameTCONS_00023239
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1129

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023239 ID=TCONS_00023239|Name=TCONS_00023239|organism=Clytia hemisphaerica|type=transcript|length=1129bp
aaaacttgtagTTAAGGGGGCCCTTgcagtttgcgtgaatgcgtgaatcg
gaaagctttgcgtgaacaaaaattgcgtgaattgcgaaaaaaacattgcg
tgattgcgtgaattgaaggtccactGGAGGGGCCTCATCAAGGATAAAGG
GGATCTCCGAGCGCCTCTGAGACGCAAGTATCAGCGAGTTCTTGTATGAT
GCTTGTAGACGGTaagttttcatgtttttttagaTCCTGAATGTCTGAAG
ACACGTCTTTTGCGAGTAAAAATTATCGGCTTGGTTTCGAAAATTTATGC
CCTGTATACTTTTGTTGAAACAATTTGTTggaatttcagcaaaaaatacc
taaaaaaaaCACATCGACATTAATAAGATGGTGAAGAAACACAATAACAA
GTTGAAGATCACCAACGATACAGGGCACATTTTGAAATACCACGGCGAAT
GGTTTGATTCAGGACGCGTGGCTGATGGATTTCGATGGCCTGAACTTATC
CAAGATGGCGGAAAAGAAACCATACTCTGCTATGAAAGGGATTGGGCGAT
GGCTGGATGTTCAGGGTACGTTCAATATCAAATCAGTGGTCAAGTTTTAA
CGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGGAGTCGGG
TTGAATGGTAAAAAGATATGGGATGAGATGGGATGCAACGATTATTCACC
ACACGTCACGACTTTACAGATGGAAACGTTCGTATTGAAATGTCATTATT
CATGTACTGGAGGTGCTACCAACAACATTGACATCGTACTGGAAAATATA
GAAAGAGTCAGAGACAATCATCCATCGAAAGTTCTTCTTCAAGTCGTCAA
TGGTTCGCATGGTTATTGATTGAAAGTTGTGGAAAATTCATGATAATCAT
TACGTCATAATTTCAAATGTGGTGGCTAATGTGTGGCaatattttaaata
attttggcTGTTTCATGATTATCATGAATACATGTATACAATTATAGACT
GGAGTCATTTATAATACTTATAATTATATAATAACATCCATAAAGTTTCC
TTACCAAAtcaactttttcttaaaatttggtCTTCTAACATAATAGACTA
TTTACATTGTTTTAATCCATAGTTTCTAC
Run BLAST on NCBI

transcript from alignment at sc0000447:223373..227563-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023239 ID=TCONS_00023239|Name=TCONS_00023239|organism=Clytia hemisphaerica|type=transcript|length=4191bp|location=Sequence derived from alignment at sc0000447:223373..227563- (Clytia hemisphaerica)
AAAACTTGTAGTTAAGGGGGCCCTTGCAGTTTGCGTGAATGCGTGAATCG
GAAAGCTTTGCGTGAACAAAAATTGCGTGAATTGCGAAAAAAACATTGCG
TGATTGCGTGAATTGAAGGTCCACTGGAGGGGCCTCATCAAGGATAAAGG
GGATCTCCGAGCGCCTCTGAGACGCAAGTATCAGCGAGTTCTTGTATGAT
GCTTGTAGACGGTAAGTTTTCATGTTTTTTTAGATCCTGAATGTCTGAAG
ACACGTCTTTTGCGAGTAAAAATTATCGGCTTGGTTTCGAAAATTTATGC
CCTGTATACTTTTGTTGAAACAATTTGTTGGAATTTCAGCAAAAAATACC
TAAAAAAAACACATCGACATTAATAAGATGGTGAAGAAACACAATAACAA
GTTGAAGATCACCAACGATACAGGGCACATTTTGAAATACCACGGCGAAT
GGTTTGATTCAGGACGCGTGGCTGATGGATTTCGATGGCCTGAACTTATC
CAAGATGGCGGAAAAGAAACCATACTCTGCTATGAAAGTATGTGTTGAAT
ATTTATAATCTGTCTTAATAAAAATAAAGCCAGGGGGCATCCTGAAATTT
GCAATTGTGCTTAGCTCTGTCTTACTCATATCAATTTCAAACATTACACA
ATTTTAGAATATTTCCTGATAAAAGCGATGAAGATTTAGAGGCGTTCATG
ATGGCTTATCTCAAAATTAGGCATGGAGACGAGGTTGTGCGACACTAACA
GTTGATAGCTAACAAAAACTCGAAGTCAATACTCTGTTGATCTTAGCAAT
TTACAGTCTCCTTCAAAGACTTTTAAAAAATGATATATTTTAGGGGATTG
GGCGATGGCTGGATGTTCAGGGTACGTTCAATATCAAATCAGTGGTCAAG
TTTTAACGATCGGCTTTTCAAATCCTTCTGCTGGAAAGAATAAAGTTGGA
GTCGGGTTGAATGGTAAAAAGGTGAGATTTTTAACACTTACCAAAGTCAA
ACCCAATCCCTTAGTTCGCCTTTTTTATGATTCTGATAGCGCTCATGAAC
GATTATACTGATGTCCATCAGTAGAAAAAAAATGATGGAAGGGTAACACT
TACCAAAGTCAAACCCAGCCCCTTAGTTCGCCTTTTTTATGATTCTGATA
GCGCTCACGAAAGATTATACTGAAAAATGAAATGATGAAAAAGTGATGGA
AGGGGCTCTGGGTTCGTACAAGATTGCTAAGACTCACCAAACTAAAAAAG
ATCGAAATAAAAGTTTTGTAAGATTAACCGTGCAAAAAAAGGCACCAACG
TATGGGGACGTCGAAAGCACCGTACGGATAGATCAATAATTTTCAGACAC
TCACCCTTGCTACTTTCATCCCGCTGATTAAGAAACCAATAAAATTAGTT
TAGTCTTTTCTTAACCCTGCCTGGATGTTTATGTGCTTATCTGATCGAGG
CAAACAAAATTTTGGAGCTTTGATGTATATTATCTTATTATACATGTTTT
TTTTATAAGCAAGTGTATGCCCCTTGGTCAGGCTCGTTTATGCTTAAGTT
ATTAAAGCATCTAGGCATAGCTTATGCTTATTATATGCTTATGATTCACC
CCGAGCCAAGTTTTTAGTGAAATTTCAGAAATTCTGTGAACGTTTTTTCA
GATTTTGGGAGCAGTGGAATGTAGCTAGCCGTGGAATGTCTTATTTTTTA
CTTGACCTCTACCAAACCTTTTTAAACATATGAAAAATGACAACTTGAAA
AATGTTCCAAGCTGACATATTATGCTTATGTTATGAGTAGGAATTCTGCA
AATTTGAGCCTTCATATGCTTATAAGCGTTATGCTTACAAAAAAAAATCC
GAACTCTCCCATTCTCGCATGAAGCTTTTTTGCTAGCGATTTCTAAACGC
ACGGCTATGCTTTTTCACGATCTTTCTGTATTGATTCAATTGGTCAATTT
TCAGCTCTAAAATGAAAGCCCTGGAAACATTTTTTTTCCATTTTCTAATC
TTTATTTTAAAGAACGTTTTGAAACGGTCTCTCATTTTTTTTTTTTTTTT
CATTAATTTTAGTCACCTCGTCAAAATTTAGTCACTAAGTTCCGACTAAT
AATTAAGACTGACTAACTAACTGTATCTTTGCTAAGGTAATACTGATATG
AAAAGTAGGTTAAGGAAAGCTTAATTATAAACTTTTAATTTGGCCCAAAG
TTTTAGTTGATTCCCTGGACACTCAAAATTACCGTAAGACAGAGCAAGTA
AAGTGAGTAAGTCTGCGACCGCAGTCAGAGGCGACCCGAAGGCTCCTCTT
TCGATAGCTATCTACCCGAAGATAGGGGAGGGCGCCACTCTTTCTCCCTG
TATTGCTATCTACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATCAAG
CAGAGAGGCATCAAGTACCGTTTTGGGAATCCTTGGTATGACCCGGCTGG
GAGTTGAACCCACAACCTTGCTCACCGTAGCCGGGTGCTCTACCACTGCA
CTACGGTCGCTGAACTGTAAAACAAAATCAAAACAGAGCAAAGCCCCCCA
AATAGAGCAAGTTTACCCCGGACAAGGCAAATTTTGTAGATTTTTCACAC
ACCCCCGGACACTATATCCTCCACCCCTTATGTACATTTTCTGGAAGAGC
CCAATGCGCATTTATTGAGCTTTCTATTCGAAATAATCACCATAAATATC
TTTTGCATAGATATGGGATGAGATGGGATGCAACGATTATTCACCACACG
TCACGACTTTACAGATGGAAACGTTCGTATTGAAATGTCATTATTCATGT
ACTGGAGGTGCTACCAACAACATTGACATCGTACTGGAAAATATAGAAAG
GTTTGTGATGAATTACGTTATATTAAGGGAAGAAATTTTGGCGGAAAGAA
ATTTTGAAAATAAAGAAAACGCAAACTGTTTTTTTCCTGCCATGAACCAA
CAAATTAAATTCCCTCTAAATTTCAATTACTGCATTTATTACCCAGATGT
GTGCTATTTCAGGCCTTAAAACATGTTTTTGGACCTACCTTGAGGTCCTA
TAAATGAACCGTTGTCCGTTCGTCCATCCGTCCGTTCGTCTGTTACAAGC
TCTCATCCTTCCGTGATTTCTTAGCTCATTTCTTTTGATTCTCGATATTT
GTGGAGTAAAAAGTAAATTATCTTATTGATAATTATAGACATGATGATTA
GTTTATAATTTGATCAGAAATAAAATACAACCAATTACTTATATATTTTC
AATAGTGTTTATAATTTCTCCCAATAGATATGCTTTCATTATAATATCCG
AACTATTTTCTCAAAAATCTTTGATTTTATTATCAGGTAAGGTCCATAAA
AGTTGATAGCAATTCCAAATATTTTCTAAAAAAATTCCGGGGCAGCCAAT
CATCGTGCTGGAAAAACGGGTTTTCTCCGTCCCTTCGTTCGTTAGGATCT
TTTCCATAAATGTCAACTTTCATTATCAGGTAGGTCTAATCAACACCGAT
CTTGTTTCTTATCTAATTGCGTTTTTTAGACAAAAATCTCCTTCATCCCC
CAAATTAAATCCCCCCCAAATTTAGTTTTTCAAGCCAAATTAAATTCCTG
TCAAAATTTCTTTCCACACTAACATCGGTTAAAAAAATTCGAACAAAATT
TCCAAAAAGTTACAAAGACGAATTCATTATGTACTTTTTCAATTACCTCT
GGTAGTGCCATGTAGTCCCAACAGCTGATTGGTTATGAATAATTTAAAAT
CAGTCTATACCTCATCTGCAACCAATCAGCTATTCATGCACCATTGCAAT
ATTTTCTGACATTTCATCACTGACCCAACAGCTGATTGTAAGTAATGTAC
ACCTCCTTTTTCTTCAGAGTCAGAGACAATCATCCATCGAAAGTTCTTCT
TCAAGTCGTCAATGGTTCGCATGGTTATTGATTGAAAGTTGTGGAAAATT
CATGATAATCATTACGTCATAATTTCAAATGTGGTGGCTAATGTGTGGCA
ATATTTTAAATAATTTTGGCTGTTTCATGATTATCATGAATACATGTATA
CAATTATAGACTGGAGTCATTTATAATACTTATAATTATATAATAACATC
CATAAAGTTTCCTTACCAAATCAACTTTTTCTTAAAATTTGGTCTTCTAA
CATAATAGACTATTTACATTGTTTTAATCCATAGTTTCTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013067XLOC_013067Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023239-exon-sc0000447-1575043694:227027..227563TCONS_00023239-exon-sc0000447-1575043694:227027..227563Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1575043694:226593..226720TCONS_00023239-exon-sc0000447-1575043694:226593..226720Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1575043694:224714..224853TCONS_00023239-exon-sc0000447-1575043694:224714..224853Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1575043694:223373..223696TCONS_00023239-exon-sc0000447-1575043694:223373..223696Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1510915933:227027..227563TCONS_00023239-exon-sc0000447-1510915933:227027..227563Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1510915933:226593..226720TCONS_00023239-exon-sc0000447-1510915933:226593..226720Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1510915933:224714..224853TCONS_00023239-exon-sc0000447-1510915933:224714..224853Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1510915933:223373..223696TCONS_00023239-exon-sc0000447-1510915933:223373..223696Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1491911889:227027..227563TCONS_00023239-exon-sc0000447-1491911889:227027..227563Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1491911889:226593..226720TCONS_00023239-exon-sc0000447-1491911889:226593..226720Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1491911889:224714..224853TCONS_00023239-exon-sc0000447-1491911889:224714..224853Clytia hemisphaericaexon
TCONS_00023239-exon-sc0000447-1491911889:223373..223696TCONS_00023239-exon-sc0000447-1491911889:223373..223696Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000447supercontigsc0000447:223373..227563 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.836797	0.875358	0.292524	1.22775	0.0696482	1.03467	2.36065	3.79978	1.44041	0.890826	0.356303	1.26038	0.488045	1.77381	2.72423	1.45083	2.1382	0.792964	1.62733	1.59121	1.22648	2.46265	0.42579	2.07011	1.40561	1.46214	2.96045	2.66794	0.501542	0.22446
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023239 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top