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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023252 ID=TCONS_00023252|Name=TCONS_00023252|organism=Clytia hemisphaerica|type=transcript|length=211bp
TATTACCGTTCTTTCTTCTATTTGTGGCCGTGTTGGGTTGTATTCAAGCA
ACgaaaaatgaatgCAAAGATGGGCGTGACGGTCGGGATGGAAAAGATGG
AAAGGACGGCAGAGACGGCAAAGACGGAGTCTGTTTATATCGAAAAGGCA
TATTCGTAATAAAgggagaaaaaggaaaagatggCAGAGATGGAAAGGAT
GGAAAAGACGG Run BLAST on NCBI transcript from alignment at sc0000449:107355..111868+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023252 ID=TCONS_00023252|Name=TCONS_00023252|organism=Clytia hemisphaerica|type=transcript|length=4514bp|location=Sequence derived from alignment at sc0000449:107355..111868+ (Clytia hemisphaerica)
TATTACCGTTCTTTCTTCTATTTGTGGCCGTGTTGGGTTGTATTCAAGCA
ACgaaaaatgtaaattaactaacATAATTCGGCCTTCTTACACCGATATA
ACGGATTATTTTAACTCCCTCCCCATTGGTAACCAAGCATTTTGATGTAT
ACTGATGGTACCAAATCATCGACCTCGTGAAAGAAAATGCGGACCCTTAA
GATATGCAACCCCTTTGGAATGATATGTTGAATCTAGCAtcactttcttt
gtttcaaaGTGGTACATTTTTCGACACctacaaaggaaattttttaaatc
gagcGGATCAAGTGTTTCCGATGAGAAAGAAATCATCCAAGACTTCGGGA
CTCTTCCAAAGTACAGTCCCTTTTTCTTATAATAACAATGACGctcaaaa
atacacaaaaacaaGAACCATTCAAGAACAATCGTGAGTCTAGAAAGGCc
gaattttaaataaaataagtTTTGTAGAAATAGGactttaaaagctttaa
aaagaCAGAAAATACACTCGAAGTACGATTTGTTATGATTAGGCACCATT
CCACATCTGGAACTATTGTTCGCTTTATCTGCTGTGGGGTCACGTTCTAT
TATTAGCATATGAACTGTTAAACCAAAAGTGACGTTAATTCACCTTAACC
TAGTGcgctctgttttttttttaaagttgaaatttttcttgattttttta
aaactgaaaACTTTAAAGTGCCATACAAGCTTGTAGCTTTTCTTTAGAAG
ATGGTTTTGATACCATTGAAAAGCtatttttatactctttttaaaagcat
tcggtttatgcccctttaaataaAAAGCTATGGCCTCAAGTCTGAGACTC
TTTTGGATGCATTATTATACGCGTCCGTCGTGGTCTAAGAGTTAATAATA
GAAAAGAGGAATAAAAGTCAGTAAACTCAAGTCTGAGACTCTTTTGGATG
CATTATTATAAGAGTTATCAATAGAAACTAGCCGGtgcccggcgtcgcac
gccggtttagctgtttgctgaacgcaagtcctttggatgttgggaaggtg
gcttaaacatgatgaaatcaaaattaaagagaaaaattatcttcaaagtt
tgactttatccctcccgggtgacgtatcttttaaccatattttgaaaaag
atttttgtggcaaaaatgatcagaaagcagaAAAAGGGCGTCATTCNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttgtggagcaagaagcaaaa
gtcatcttttaaaagaacaaaacattgcttgcgaaaacgaaagtgacaca
caaaaaacaaaccaacaaaaaacaaaccaacaacaaactgacatacagac
tacggctattaatatatagaagaGGAATAAAAGTCAGTAAACTCAACGTC
AAGTATGAGATTCCCTTCCCCAGATTATTTCGCTCGTCTCCTACAATTAA
AACTAAAGCACGATGAGCAATAAATGTTATAGAAAAAGCTCGTACAAGAT
CCATTTTTTTTAACGCGGTCTTGTATTACGGTACAATATGACGTAAagca
tttatgtacgcgtttttagctaatcagattgctcatatttttcatgttga
tgataaACGTCAGTAAACTCAATGTCAAGTATGAGATTCTCTTCCCAAGA
TTATTCCGCTTATCTCCTACAATTAAAACTAAAGCACAAGGAGCAATCGC
AGGTCGTCCGAAACATCCAGATTTGAAATAACATCGCtgttgaaaaagat
tttgaagtaAATGCAGGTGAATGAATCTAAAGTCTAAATTTTGCCTTCCT
TCTTACTCAGAAATACTTCAGCTTATTGTCTTCATATGGCACCAAATTCA
AAGAGGATGAttaggaaaacagcgagcggcagcgtcGTTACTTATCCTCT
TTTCCTAAATCTCTGATAACGATTCACGCGAAATAATTTCTGCCATCCAA
ACTTTCCGCCCTAAAAATATTATCAGTAAGCGTTCCCTGAAAAATAACTG
TTTTCTACTGTGCTACTAATTAAGTAGAGATATGAAGACAGGAGTAAATG
TATGATATAAGAATGAGTCTTCTTTAGTACAGAACGGTTCTCAATTCTAA
CTTATACTTCccagtaatattttcaaaagaagttTCCGCAAAGTTGTATG
ACTATGTTGATAAGGTTTAAAAATATTCTGCAGACTTACTCTAAATCACT
TCATAAATAACCTATAAGCTCATAAGGAAATTGGATGTAGGAGTTCTTCA
AGACAAATTTTGCAGTAAACTGTTAAAACGGTACCATTATGTGATCGTAA
ACAGGATTATTTATAACGACTCTTTAAAAGACCTCTTTTAAAACAACTAA
CAAAATTGTTAGGAAATGAAGCAACGGATTAAGGATTTTAGGCCAATTTT
AAAGCATTTGTTGAAGACGTCACTAGAATGACTATGgtatattcttttta
tttagaTATACCACTCCCTTTACTCAAATACATCTTTTGAGTTTAGCGCC
GGCTCTTTTTCTAGACAAGCTAACCTTATAAATAGGGGGGTTCTAGCTGT
TTGCTCAATCATCAACAATCAAAGAGATCAACCACAAGAACACTGACGGA
CTAGAAGAAAGTAGGGACAAAAACACATTGTCGAACGTAttcaagaaagt
ttttcaagatTAACATTCGATATGAACAAGCTTTTATGTATTCCAGTTCT
TTTGACAATGATGTTTGTCTTTGTATCGACTGCTAACAATCAGGTGGGTA
ATCagtgtttataattttttcattaaaaacaaactaactaatcggggaaa
aaatgtcagagtttatttagtcggggttctttttcgtcgggaaaaaaatt
cttcacctagaggcattttcgtcactttcccacgatattttttccccgat
gaggtatataagaacattatacATCGATgaccgaaaaattaagaacaagt
taggagTATTTTAAGGGTTTGCGGACGTAAGAAgtcgtattgtataaggg
ttgcgaagcgatggTGAATAAAAGAACAGTTTAAGAACCTttttagttca
aaagttatggacgTGTAAAATTGACCTTAAAAAGCATTAAATTGCTCCCC
GAAATTGTCTTAAAACGGCTCGTGTGGATCAATTGGGCAcagttttcaga
aaaatgtgAATATTTCGTTGAAATAAGATTTTCAACCCCTAAATTGAAAT
ATAGGCCTAAAAGGtctaaaaataccatttttcataaattttgccTTAAG
TGCAAATCAGTGCCCCTAACTATAAAAAAGGACAGAAAACGATaggctaa
attttcaaaaaaacatcaatCTTGAATTTTCGACCCAGAAGGGACTGTTG
ACCCCTACAATACTGAAAGATTCTTGGTGATTTACGTGATGAATTTTTTA
GCTTTGTAGCTTTCCAAAAGCTTTGAAAGATAACTATGTCGCATCAAAGG
TTTACAAACCCTAGAGGTTTTTCAGTCATTCctaattttaaaaatgattt
tttttatataaggaatgCAAAGATGGGCGTGACGGTCGGGATGGAAAAGA
TGGAAAGGACGGCAGAGACGGCAAAGACGGAGTCTGTTTATATCGAAAAG
GCATATTCGTAATAAAgggagaaaaaggaaaagatggCAGAGATGGAAAG
GATGGAAAAGACGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023252-exon-sc0000449-1491911889:107355..107413 | TCONS_00023252-exon-sc0000449-1491911889:107355..107413 | Clytia hemisphaerica | exon |
| TCONS_00023252-exon-sc0000449-1510915933:107355..107413 | TCONS_00023252-exon-sc0000449-1510915933:107355..107413 | Clytia hemisphaerica | exon |
| TCONS_00023252-exon-sc0000449-1575043694:107355..107413 | TCONS_00023252-exon-sc0000449-1575043694:107355..107413 | Clytia hemisphaerica | exon |
| TCONS_00023252-exon-sc0000449-1491911889:111717..111868 | TCONS_00023252-exon-sc0000449-1491911889:111717..111868 | Clytia hemisphaerica | exon |
| TCONS_00023252-exon-sc0000449-1510915933:111717..111868 | TCONS_00023252-exon-sc0000449-1510915933:111717..111868 | Clytia hemisphaerica | exon |
| TCONS_00023252-exon-sc0000449-1575043694:111717..111868 | TCONS_00023252-exon-sc0000449-1575043694:111717..111868 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000449 | supercontig | sc0000449:107355..111868 + |
Blast
The following BLAST results are available for this feature:
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