TCONS_00023261 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023261
Unique NameTCONS_00023261
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1030

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023261 ID=TCONS_00023261|Name=TCONS_00023261|organism=Clytia hemisphaerica|type=transcript|length=1030bp
CTCAAATACATCTTTTGAGTTTACCGCCGGCTCTTTTTCTAGACAAGCTA
ACCTTATAAATAGGGGGCTTCTAGCTGTTTGCTCAATCATCAACAATCAA
AGAGATCAACCACAAGAAAACTGACGGACTAGAAGGAAGAAGGGATAAAA
ACACATAGTAttcaagaaagtttttcaagatTGACATTCGATATGAACAA
GCTTATATGTATTCCAGTTCTTTTGACAATGATGTTTGTCGTCGTATCGA
CTGCTAATAATCAGGAATGCAAAGATGGACGTGATGGTCGGGATGGAAAA
GACGGCAGAGACGGCAAAGACGGAGtctgcttatataaaaaaggcGTATT
CGgaataaaaggagaaaaaggaGAAGATGGCAAAGATGGAATAAACGGAA
AGAATGGGACAAATGGAAAGGATGGGATAAATGGAAAAGACGGAAAAGAT
GGCAGAGATGGAAAGGATGGAAAAGACGGTTTGACGAAAAACTGGAAAGA
ATGCGCTTGGAACAAAATTGACGACCACAAAGATAATGGTGTTATAAAGT
CTTGCGCCTTCAAAAGGGAATCCCCCTCTACTTATTTAAAAGTTGTTGTT
TCTTCGAATATGAGAATATACAACTGTAATGCTTGCTGTAAAAGATGGTT
TGTCACTTTCGATGGACATGAATGTGCACCTGTGCCGATAGACGGTGTCG
TTTTTATGAGAGAAGGTACTGGAAACCGTATCAAGGATCTACATCGACCA
CGAGTTATCACTGGACATTGTAAGGTTTCGAAAAAAAGACAAGTCAATGT
GGCTCTTAATATTGGTAATTGTGCTAATACTCCCGGGGGCGACGCTCACA
CTGGCTGGAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCAGCCG
CAATCTTGAAAcaagttttttgttttataaatataaacaaGCAGCCTGTC
GGCATTAAGGCCCAGCTCTCTTTCAGTATCGTCGGGCATCTCGCATCTCT
CCATCATTCCTGCAGATATCAATCAGTACT
Run BLAST on NCBI

protein sequence of TCONS_00023261-protein

>TCONS_00023261-protein ID=TCONS_00023261-protein|Name=TCONS_00023261-protein|organism=Clytia hemisphaerica|type=polypeptide|length=238bp
MNKLICIPVLLTMMFVVVSTANNQECKDGRDGRDGKDGRDGKDGVCLYKK
GVFGIKGEKGEDGKDGINGKNGTNGKDGINGKDGKDGRDGKDGKDGLTKN
WKECAWNKIDDHKDNGVIKSCAFKRESPSTYLKVVVSSNMRIYNCNACCK
RWFVTFDGHECAPVPIDGVVFMREGTGNRIKDLHRPRVITGHCKVSKKRQ
VNVALNIGNCANTPGGDAHTGWNSATRIYIEEVDQPQS
Run BLAST on NCBI

transcript from alignment at sc0000449:5528..9347-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023261 ID=TCONS_00023261|Name=TCONS_00023261|organism=Clytia hemisphaerica|type=transcript|length=3820bp|location=Sequence derived from alignment at sc0000449:5528..9347- (Clytia hemisphaerica)
CTCAAATACATCTTTTGAGTTTACCGCCGGCTCTTTTTCTAGACAAGCTA
ACCTTATAAATAGGGGGCTTCTAGCTGTTTGCTCAATCATCAACAATCAA
AGAGATCAACCACAAGAAAACTGACGGACTAGAAGGAAGAAGGGATAAAA
ACACATAGTATTCAAGAAAGTTTTTCAAGATTGACATTCGATATGAACAA
GCTTATATGTATTCCAGTTCTTTTGACAATGATGTTTGTCGTCGTATCGA
CTGCTAATAATCAGGTGAGTAATCAGTGTTTATAATTTTTTAAATAAGAA
CAAACTACCGGGTGCACCAAAAAAAAGTATACAGGTTTGTCGAGATATTG
TGAGCTTCAGGATTTATATTTTTTGTTCATTCTTTTTTTTTATTGTATAG
AGGATGCTCTAACTTGAATTTTGAGCTATTATACATTAAATTTGAAAAAG
TAGTTCGAAAGTTATTTCCAAAAAACTGGCTTTTTTTCCATGTCGAAATT
TCAAAAAATCATTAAAAACAGCAATCACGCTATAAATAATACAAAATGAC
AAAAAAACAATTTCATTGTTTCTTTTCTTCTTTTCTTCTTTTTTCTCCTA
TTTTATATTTTGCCAACGGTTTGTCTATCTTATTTACACGTCATGAATAT
TTCCAACACCAGCAAACTCAATGCAGACAAGTTCTTTGAGCAACTAGTTG
AGGAATTGTGATTTATTTTTTCAAAAATTTTCTCACGTAGCACACCACAC
CTCTCTTGGAGATTTCCAAAAAAAATTTTCAGCTTTACCAAAAATATTTT
TCCACATGGGAATAGCTTGTTTTACCATATTCTTAAATTCCGTAACGAGT
TTTGATGAACACAATTGCATTTTTTGGTATTTTTATGTGTAAAGAAGGTA
AGTGCCAAAGAAAAGTTTGCTCGCTGTTTTTGATGAGTTTTTGAAATTTC
GACATTAAAAAAAAGTCAGTTTTTTTAAAATAATTTTCGTATTACTTTTT
CAAACCTAATGTATGATAGCTCAAAATTCAAGTTAGAGCATCCTCTATGC
GATAAAAAAAGAATGAATAAAAAATTTAAATCCTGAAGCTCACAATATCT
CGACAAAGTTGTATACTTTTTTTTGGTGCACCCGGTATATAAGAATATAA
TGCATCGAAGACCGGAAAATTAAGAACAAATTAGGAATATTTTAAGGGTT
TCCAGACTCTAAAACACATAACTTCTTAGCAAATTGAACAAAAATACTCA
CAAGTGGTGTGTAAAGAATATGTTAAGAACATTTTAGTTCAAAAGATATA
AACTTGAAAAATTAACCTTAAAAAGCATTAAATTGCTAGTCGGAATTGGC
TTAAAACGGCTCGTTGGGCTCAAATGGGTAAACTTTTCAGAGAAAGGGGA
CTATTTCATTGAAGGAAGATTTTCAACCCCTATATTGAAATACAGGTCTA
AAGAGCCTAAAAATACCATTTTTCATAAATTTTGGATTAAGTACAAATCA
GTAATCACTGACTATAAAAACGAACAAAGCACGTTGGGTTAAATCTTCAC
AAAAAACATCACATCTTGAATTTTCGACCCAGAGGTGGCTGTTGATCCCT
ACAATACTAAAAGATTCTTGGTGATTTACATGATGAATCTTTGAACCTTG
TAGCTTTTTAAAAACTTTGAAAGTGGCATCAAAGATTTAGAACCCCTAGA
TGTTTTTCAGTGATTCCTAATTTGAAAAATGATTTTTTTTGTATAAGGAA
TGCAAAGATGGACGTGATGGTCGGGATGGAAAAGACGGCAGAGACGGCAA
AGACGGAGTCTGCTTATATAAAAAAGGCGTATTCGGAATAAAAGGAGAAA
AAGGAGAAGATGGCAAAGATGGAATAAACGGAAAGAATGGGACAAATGGA
AAGGATGGGATAAATGGAAAAGACGGAAAAGATGGCAGAGATGGAAAGGA
TGGAAAAGACGGTTTGACGAAAAACTGGAAAGAATGCGCTTGGAACAAAA
TTGACGACCACAAAGATAATGGTGTTATAAAGGTAGGCTATAAAAATAGG
AGCATTGTAATTGCTGTCAGTAGAGAAATCTCTGCTTTCAGTTCTGCCAT
CAAATATCAAACATAAAACACTAGATCGAGCTATTGCGTCCCCTGCTTGA
AAAAGTTGCCGGTCTACTGTTGTCTACTTTTCGTAAAGATTGTTTTGCTT
TAACTGCAACAGGCTTGGGAAAAAATGGATTAGCTCTATCTAGTTATTAT
TGTAAGATAGTTTTGGTCATATCTACAATCATGATTGAAATATATTGAGA
ATTCCGGTTATGTTAACGTTTTTCAAAATTTAAAGTTCGGGCGAGAAAGT
AGATTTTGGGTTCTCTCTTTAATTTAATCAAATATTTCAATTTGGGAGGA
GTTGGCAGACTTCCAGGCTATATTCATAGTCTTACTGTATTTTTACACGT
TTTGATCTTAAGTTTAGCGTTTAAACTCAGATTTAAAACTCTACCCTTCT
AACCTACTTTAGAGCACTTACAAATCGATTGCAGTTTCAAAATTTCCCGC
TGAATTTCCCTTTTTTGTCAAATATTATGACCTTGATTGTAGCAAACATA
CCCCGAAAATGGCATGGTAATGGTCTGTGATGTATATCATAAAGAAAGCT
AGAACCTATTAAAACAATACGATTTTTCAAAATTTTCGAAAAACCTTATC
CTCAGGTGTCTAATCAACACCCCTCCACCACTCATTAATGTTTCGATTTT
TTCAAACCCATTGCTTTATCAAGTTTTTAAAAATATTCTTGGCTGTCAAA
AGTACCATTTAAAGTACAAAATGTTTCTTTAAATAACCAGACCTTAGTCT
ATAATTGTACCTTACTAGTTTCCAATTACAATCACGCCCTTATTCTTCAG
ACACCTGAGAGTACATTTTATTAGGTCAGAACCACAAAAATATAAGAATC
AGTTTGGTTTAGAAAGTCAGCCTTTACAAATAATAGTTCCCATTAAATAA
ACCAAATTGAGTAAAAATGAACTACTCTCGGGTATGTAATAGCCGCCCGT
TGAAAATTTTCCACCCAGGACATTCTCACTTCCCCCCCCCCCGCTTATTA
ATTTTTGGGAAAATGTTTTTGAAAGTTCCCTCTATTGTCCTAATTCAGCT
GTATTAGCCTTCTTTTCAAAAATTTTTCGCCCAGGACATTTTTATTCCAA
CCCCCCCCGCTTATTAAGTTTTGAGATTTCTTCCAAATCCCCGCTTATTC
CAATCCCCAAGGCTAATAGGTACCCGAGAGTAATCGGTATCATTAACCAT
TCTGTTATTAATTGAAGAATAAACCTCTCATTTTTTCAGTCTTGCGCCTT
CAAAAGGGAATCCCCCTCTACTTATTTAAAAGTTGTTGTTTCTTCGAATA
TGAGAATATACAACTGTAATGCTTGCTGTAAAAGATGGTTTGTCACTTTC
GATGGACATGAATGTGCACCTGTGCCGATAGACGGTGTCGTTTTTATGAG
AGAAGGTACTGGAAACCGTATCAAGGATCTACATCGACCACGAGTTATCA
CTGGACATTGTAAGGTTTCGAAAAAAAGACAAGTCAATGTGGCTCTTAAT
ATTGGTAATTGTGCTAATACTCCCGGGGGCGACGCTCACACTGGCTGGAA
TTCAGCAACACGAATTTACATTGAAGAAGTTGACCAGCCGCAATCTTGAA
ACAAGTTTTTTGTTTTATAAATATAAACAAGCAGCCTGTCGGCATTAAGG
CCCAGCTCTCTTTCAGTATCGTCGGGCATCTCGCATCTCTCCATCATTCC
TGCAGATATCAATCAGTACT

Coding sequence (CDS) from alignment at sc0000449:5528..9347-

>TCONS_00023261 ID=TCONS_00023261|Name=TCONS_00023261|organism=Clytia hemisphaerica|type=CDS|length=2151bp|location=Sequence derived from alignment at sc0000449:5528..9347- (Clytia hemisphaerica)
TCTTGCGCCTTCAAAAGGGAATCCCCCTCTACTTATTTAAAAGTTGTTGT
TTCTTCGAATATGAGAATATACAACTGTAATGCTTGCTGTAAAAGATGGT
TTGTCACTTTCGATGGACATGAATGTGCACCTGTGCCGATAGACGGTGTC
GTTTTTATGAGAGAAGGTACTGGAAACCGTATCAAGGATCTACATCGACC
ACGAGTTATCACTGGACATTGTAAGGTTTCGAAAAAAAGACAAGTCAATG
TGGCTCTTAATATTGGTAATTGTGCTAATACTCCCGGGGGCGACGCTCAC
ACTGGCTGGAATTCAGCAACACGAATTTACATTGAAGAAGTTGACCAGCC
GCAATCTTGAGAATGCAAAGATGGACGTGATGGTCGGGATGGAAAAGACG
GCAGAGACGGCAAAGACGGAGTCTGCTTATATAAAAAAGGCGTATTCGGA
ATAAAAGGAGAAAAAGGAGAAGATGGCAAAGATGGAATAAACGGAAAGAA
TGGGACAAATGGAAAGGATGGGATAAATGGAAAAGACGGAAAAGATGGCA
GAGATGGAAAGGATGGAAAAGACGGTTTGACGAAAAACTGGAAAGAATGC
GCTTGGAACAAAATTGACGACCACAAAGATAATGGTGTTATAAAGATGAA
CAAGCTTATATGTATTCCAGTTCTTTTGACAATGATGTTTGTCGTCGTAT
CGACTGCTAATAATCAGTCTTGCGCCTTCAAAAGGGAATCCCCCTCTACT
TATTTAAAAGTTGTTGTTTCTTCGAATATGAGAATATACAACTGTAATGC
TTGCTGTAAAAGATGGTTTGTCACTTTCGATGGACATGAATGTGCACCTG
TGCCGATAGACGGTGTCGTTTTTATGAGAGAAGGTACTGGAAACCGTATC
AAGGATCTACATCGACCACGAGTTATCACTGGACATTGTAAGGTTTCGAA
AAAAAGACAAGTCAATGTGGCTCTTAATATTGGTAATTGTGCTAATACTC
CCGGGGGCGACGCTCACACTGGCTGGAATTCAGCAACACGAATTTACATT
GAAGAAGTTGACCAGCCGCAATCTTGAGAATGCAAAGATGGACGTGATGG
TCGGGATGGAAAAGACGGCAGAGACGGCAAAGACGGAGTCTGCTTATATA
AAAAAGGCGTATTCGGAATAAAAGGAGAAAAAGGAGAAGATGGCAAAGAT
GGAATAAACGGAAAGAATGGGACAAATGGAAAGGATGGGATAAATGGAAA
AGACGGAAAAGATGGCAGAGATGGAAAGGATGGAAAAGACGGTTTGACGA
AAAACTGGAAAGAATGCGCTTGGAACAAAATTGACGACCACAAAGATAAT
GGTGTTATAAAGATGAACAAGCTTATATGTATTCCAGTTCTTTTGACAAT
GATGTTTGTCGTCGTATCGACTGCTAATAATCAGTCTTGCGCCTTCAAAA
GGGAATCCCCCTCTACTTATTTAAAAGTTGTTGTTTCTTCGAATATGAGA
ATATACAACTGTAATGCTTGCTGTAAAAGATGGTTTGTCACTTTCGATGG
ACATGAATGTGCACCTGTGCCGATAGACGGTGTCGTTTTTATGAGAGAAG
GTACTGGAAACCGTATCAAGGATCTACATCGACCACGAGTTATCACTGGA
CATTGTAAGGTTTCGAAAAAAAGACAAGTCAATGTGGCTCTTAATATTGG
TAATTGTGCTAATACTCCCGGGGGCGACGCTCACACTGGCTGGAATTCAG
CAACACGAATTTACATTGAAGAAGTTGACCAGCCGCAATCTTGAGAATGC
AAAGATGGACGTGATGGTCGGGATGGAAAAGACGGCAGAGACGGCAAAGA
CGGAGTCTGCTTATATAAAAAAGGCGTATTCGGAATAAAAGGAGAAAAAG
GAGAAGATGGCAAAGATGGAATAAACGGAAAGAATGGGACAAATGGAAAG
GATGGGATAAATGGAAAAGACGGAAAAGATGGCAGAGATGGAAAGGATGG
AAAAGACGGTTTGACGAAAAACTGGAAAGAATGCGCTTGGAACAAAATTG
ACGACCACAAAGATAATGGTGTTATAAAGATGAACAAGCTTATATGTATT
CCAGTTCTTTTGACAATGATGTTTGTCGTCGTATCGACTGCTAATAATCA
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013079XLOC_013079Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023261-proteinTCONS_00023261-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023261-exon-sc0000449-1575043694:9084..9347TCONS_00023261-exon-sc0000449-1575043694:9084..9347Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1575043694:7316..7600TCONS_00023261-exon-sc0000449-1575043694:7316..7600Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1575043694:5528..6008TCONS_00023261-exon-sc0000449-1575043694:5528..6008Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1510915933:9084..9347TCONS_00023261-exon-sc0000449-1510915933:9084..9347Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1510915933:7316..7600TCONS_00023261-exon-sc0000449-1510915933:7316..7600Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1510915933:5528..6008TCONS_00023261-exon-sc0000449-1510915933:5528..6008Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1491911889:9084..9347TCONS_00023261-exon-sc0000449-1491911889:9084..9347Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1491911889:7316..7600TCONS_00023261-exon-sc0000449-1491911889:7316..7600Clytia hemisphaericaexon
TCONS_00023261-exon-sc0000449-1491911889:5528..6008TCONS_00023261-exon-sc0000449-1491911889:5528..6008Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:5528..9347 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0.0905779	0.0902108	0.0890915	0.0641023	11.5862	13.3822	0	0.0684156	0.200155	0.12962	33.0156	29.9767	0.496023	0.903037	6.82493	9.96312	14.1701	7.50324	3.07512	3.90348	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008160Collagen
Blast
[Close]
BLAST of TCONS_00023261 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.333e-29
Identity = 53/141 (37.59%), Postives = 91/141 (64.54%), Query Frame = 1 
Query:  484 TKNWKECAWNKIDDHKDNGVIKSCAFKRESPSTYLKVVVSSNMRIYNCNACCKRWFVTFDGHECA-PVPIDGVVFMREGTG--NRIKDLHRPRVITGHCKVSKKRQVNVALNIGNCANTPGGDAHTGWNSATRIYIEEVDQ 897
            T N+K+C+W+ ++   D G I  C F +   ++ L+V+ S ++R+   NACC+RW+ TF+G EC+ P+PI+ ++++ +G+   N   ++HR   + G C+      V+VA+ +G C++ P GDA TGWNS +RI IEE+ +
Sbjct:  103 TPNYKQCSWSSLNYGIDLGKIAECTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023261 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR14.333e-2937.59Collagen triple helix repeat-containing protein 1 ... [more]
back to top