|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023269 ID=TCONS_00023269|Name=TCONS_00023269|organism=Clytia hemisphaerica|type=transcript|length=2187bpRun BLAST on NCBI transcript from alignment at sc0000449:76967..90220- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023269 ID=TCONS_00023269|Name=TCONS_00023269|organism=Clytia hemisphaerica|type=transcript|length=13254bp|location=Sequence derived from alignment at sc0000449:76967..90220- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023269 vs. Swiss-Prot (Human)
Match: ADGB (Androglobin OS=Homo sapiens GN=ADGB PE=2 SV=3) HSP 1 Score: 307.76 bits (787), Expect = 6.511e-89 Identity = 227/729 (31.14%), Postives = 347/729 (47.60%), Query Frame = 2
Query: 32 NKEIWMELDDFFECFNFLWIFHRPKQYNKNVIDLKNFEAKNERGKKSSGHNLVTAGRSALLSPTSFLYGGNASSDTPPPYILIDCLKEVELMITLQSFSRWFDPNLSINYVKDGQIDKDILSQVPKPVSGSLVIEPYSWKKVAASSPLLKIRTTGVKAVALTLPPGRHVLRLMVTAPLGFNVHLSSLHPFHYGDENIIMQELKNESQRFIEHSMEVVQQIANVMQTFISPANCNPTKLLLGTETKSNQTRLEHFEALFESFGAIMKKELGSNYNQQATKFALEALKHQAYFHLMKFHKRSTKRPTSLPALSATQQTFTRDDCSFKRTSLP---SIHFKLKNNHRD------KAAAMFQALFRGFVVRKLKQACTPGSAENVSCVEQLTKVLQLVTSNCEQISISTYRHMFTMKPSLFQLFPFHSDDWNKISYMDYTGTYPEQQADSWFVVCRDIFYVEESFLVLPKFYCNVPGCHLIVINNDTCCRVKTVFKRVVPQVLQKNKTGYTFVVTAYT-ENVVPAGKFKLRLIGERNPLPGSSKEGTINSSFFVNETRDYYIPNKYDRIFRHSVSTTEDVLSSIQFTTSKDEAHVKVQVLDQGEVVYESVGKKYVTIPALIFCKNVIQGEEXXXXXXXXXXXXXXXXXXXXXXNKRPNSSSRKSASPEKNKSKILEPKIPETIEET--------------KIHKYVIQGFVLKDSWPLTKKQWDFIENPKNFE 2146
+KEIW++ +DF CF ++IFH+P Y N F+ ER S+ Y+ +D LK +EL++ + RW + G + KD P G L E +SWK + S +LKI T KA + LP GRH+L +P+G ++H+ S+ F GDE++++ + ES RF E S+ +++ I NV+ F L K QT H+ F KEL + + + + H + + LMK + + P A A + S + SL + + + + ++ AA QA++RG VR L +A P + EN+S + L KV ++ N EQ ++S R MF K + +P + D+ KI++ DYT TY EQ +SWF+V R+ F V + +++PK Y +P C L ++NNDT +V VF++VVP + KNK GYTFV A+T + V A ++KLRLIG PLP S++ N SF + E RDYYIPN +FR+SV ++IQ TSK +A +K+QVL+ E + S GK IPA F K+ +G S+ S ++ K+ +KS + S I + +P EET + +KY+IQ VL +SWPLT+ Q F++ K+ +
Sbjct: 628 SKEIWLDFEDFCVCFQNIYIFHKPSSYCLN-FQKSEFKFSEER--------------------VSY-------------YLFVDSLKPIELLVCFSALVRWGE---------YGALTKD----SPPIEPGLLTAETFSWKSLKPGSLVLKIHTYATKATVVRLPVGRHMLLFNAYSPVGHSIHICSMVSFVIGDEHVVLPNFEPESCRFTEQSLLIMKAIGNVIANFKDKGK-------LSAALKDLQT--AHYPVPFHD------KELTAQHFR---------VFHLSLWRLMKKVQITKPPPNFKFAFRAMVLDLELLNSSLEEVSLVEWLDVKYCMPTSDKEYSAEEVAAAIKIQAMWRGTYVRLLMKARIPDTKENISVADTLQKVWAVLEMNLEQYAVSLLRLMFKSKCKSLESYPCYQDEETKIAFADYTVTYQEQPPNSWFIVFRETFLVHQDMILVPKVYTTLPICILHIVNNDTMEQVPKVFQKVVPYLYTKNKKGYTFVAEAFTGDTYVAASRWKLRLIGSSAPLPCLSRDSPCN-SFAIKEIRDYYIPNDKKILFRYSVKVLTPQPATIQVRTSKPDAFIKLQVLENEETMVSSTGKGQAIIPAFHFLKSE-KGLSSQSSKHILSFHSASKKEQEVYVKKKAAQGIQKSPKG-RAVSAIQDIGLPLVEEETTSTPTREDSSSTPLQNYKYIIQCSVLYNSWPLTESQLTFVQALKDLK 1282 The following BLAST results are available for this feature:
BLAST of TCONS_00023269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.