TCONS_00023277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023277
Unique NameTCONS_00023277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023277 ID=TCONS_00023277|Name=TCONS_00023277|organism=Clytia hemisphaerica|type=transcript|length=247bp
GTTGACAGGATCACTCTTGTAAGGAAGCTGCACACTTACAACTGGACGGT
TATCAATATTAATGAATGCCTTAATTGATACAATGTCACAGATAATGGTG
ATGTCGCTAATATTGATTATGGGTGCATCTGGCTGAACTTTTGGTTCAGG
AACTGGCAGATACGGAAATTCTACAGCCgtctttgtttcttttgaagGGC
TTCCAAATTTGATGACATCATTGTATTTCTTCAACTTACTTGGGCTT
Run BLAST on NCBI

transcript from alignment at sc0000449:29480..29726

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023277 ID=TCONS_00023277|Name=TCONS_00023277|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at sc0000449:29480..29726 (Clytia hemisphaerica)
AAGCCCAAGTAAGTTGAAGAAATACAATGATGTCATCAAATTTGGAAGCC
cttcaaaagaaacaaagacGGCTGTAGAATTTCCGTATCTGCCAGTTCCT
GAACCAAAAGTTCAGCCAGATGCACCCATAATCAATATTAGCGACATCAC
CATTATCTGTGACATTGTATCAATTAAGGCATTCATTAATATTGATAACC
GTCCAGTTGTAAGTGTGCAGCTTCCTTACAAGAGTGATCCTGTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013087XLOC_013087Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023277-exon-sc0000449-1491911889:29480..29726TCONS_00023277-exon-sc0000449-1491911889:29480..29726Clytia hemisphaericaexon
TCONS_00023277-exon-sc0000449-1510915933:29480..29726TCONS_00023277-exon-sc0000449-1510915933:29480..29726Clytia hemisphaericaexon
TCONS_00023277-exon-sc0000449-1575043694:29480..29726TCONS_00023277-exon-sc0000449-1575043694:29480..29726Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:29480..29726 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.32238	0.598936	0.316123	0	19.6361	13.6933	22.3372	16.105	12.2516	12.6555	21.6256	11.4802	10.6554	22.4283	14.2806	14.7341	13.3926	12.7851	21.69	27.8811	10.4087	15.5107	6.98163	11.2477	21.1054	32.8559	14.9837	4.12922	8.01298	8.99605
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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