TCONS_00023280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023280
Unique NameTCONS_00023280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length770

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023280 ID=TCONS_00023280|Name=TCONS_00023280|organism=Clytia hemisphaerica|type=transcript|length=770bp
CCCTGAAATAAGCTTTTTTAATACAAATgataaaactaaataaaaacatg
atacaATGAACAATGAACTTACATCTTGAaaataaaggccggtctccact
tgtagactctaaaacacccgatttcaagataagaaaataacaaaattact
cacaaaatggtgaaaatttaagaacaattttatgcttaaaactcaaaaat
agtTAAAACCATCTGAAGGCCTCAAATTTATacatgttctaataaaaaac
gtgcaaatattAAAATAGAACTTATATAAAGATTATAACAATATCTATAA
AACAAAAAACTCGTTTTAAGATTGTGGCCGATCAACTTCTTCAATGTAAA
TTCGTGTTGATGATTGCCATCCAGTGTATGCGTCACCCCCTGGACGTATA
GTACAATCGCCAACATTAAGAGCCACATTGACTTGTTGTTTTTTCGAGAT
CTTACAATGTCCCCGAATAACTCGTGGACGATGCAGGTTCTGTCGATTGT
TTCCAGCGCCTATATCTATATTAACAATACCGTCTATCGGCACAGGTGCA
CATTCGTGTCCATCAAAAGTGACAAACCATCTTTTACAGCAATTATTACA
GTTGAATAATCTCATATCCGAAGAAACAACAACTTTCAAGTAAGTAGAGG
GAGATTCCTTTTTGAAGGTGCAAGACTGAAAAAAAAGAGGTTGTGTTTTC
TTCAATTAATGACAGAATGGTTAATGATACCGATTAgttcatttttgttc
aatttggtTTATATAATGGG
Run BLAST on NCBI

protein sequence of TCONS_00023280-protein

>TCONS_00023280-protein ID=TCONS_00023280-protein|Name=TCONS_00023280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
MRLFNCNNCCKRWFVTFDGHECAPVPIDGIVNIDIGAGNNRQNLHRPRVI
RGHCKISKKQQVNVALNVGDCTIRPGGDAYTGWQSSTRIYIEEVDRPQS
Run BLAST on NCBI

transcript from alignment at sc0000449:132997..133766

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023280 ID=TCONS_00023280|Name=TCONS_00023280|organism=Clytia hemisphaerica|type=transcript|length=770bp|location=Sequence derived from alignment at sc0000449:132997..133766 (Clytia hemisphaerica)
CCCATTATATAAaccaaattgaacaaaaatgaacTAATCGGTATCATTAA
CCATTCTGTCATTAATTGAAGAAAACACAACCTCTTTTTTTTCAGTCTTG
CACCTTCAAAAAGGAATCTCCCTCTACTTACTTGAAAGTTGTTGTTTCTT
CGGATATGAGATTATTCAACTGTAATAATTGCTGTAAAAGATGGTTTGTC
ACTTTTGATGGACACGAATGTGCACCTGTGCCGATAGACGGTATTGTTAA
TATAGATATAGGCGCTGGAAACAATCGACAGAACCTGCATCGTCCACGAG
TTATTCGGGGACATTGTAAGATCTCGAAAAAACAACAAGTCAATGTGGCT
CTTAATGTTGGCGATTGTACTATACGTCCAGGGGGTGACGCATACACTGG
ATGGCAATCATCAACACGAATTTACATTGAAGAAGTTGATCGGCCACAAT
CTTAAAACGAGTTTTTTGTTTTATAGATATTGTTATAATCTTTATATAAG
TTCTATTTTaatatttgcacgttttttattagaacatgtATAAATTTGAG
GCCTTCAGATGGTTTTAactatttttgagttttaagcataaaattgttct
taaattttcaccattttgtgagtaattttgttattttcttatcttgaaat
cgggtgttttagagtctacaagtggagaccggcctttatttTCAAGATGT
AAGTTCATTGTTCATtgtatcatgtttttatttagttttatcATTTGTAT
TAAAAAAGCTTATTTCAGGG

Coding sequence (CDS) from alignment at sc0000449:132997..133766

>TCONS_00023280 ID=TCONS_00023280|Name=TCONS_00023280|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at sc0000449:132997..133766 (Clytia hemisphaerica)
ATGAGATTATTCAACTGTAATAATTGCTGTAAAAGATGGTTTGTCACTTT
TGATGGACACGAATGTGCACCTGTGCCGATAGACGGTATTGTTAATATAG
ATATAGGCGCTGGAAACAATCGACAGAACCTGCATCGTCCACGAGTTATT
CGGGGACATTGTAAGATCTCGAAAAAACAACAAGTCAATGTGGCTCTTAA
TGTTGGCGATTGTACTATACGTCCAGGGGGTGACGCATACACTGGATGGC
AATCATCAACACGAATTTACATTGAAGAAGTTGATCGGCCACAATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013090XLOC_013090Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023280-proteinTCONS_00023280-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023280-exon-sc0000449-1491911889:132997..133766TCONS_00023280-exon-sc0000449-1491911889:132997..133766Clytia hemisphaericaexon
TCONS_00023280-exon-sc0000449-1510915933:132997..133766TCONS_00023280-exon-sc0000449-1510915933:132997..133766Clytia hemisphaericaexon
TCONS_00023280-exon-sc0000449-1575043694:132997..133766TCONS_00023280-exon-sc0000449-1575043694:132997..133766Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000449supercontigsc0000449:132997..133766 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0616691	0.143208	0.0700531	11.769	10.5805	12.6023	12.8638	1.8119	8.0532	0.704779	0.547529	59.297	58.4577	0	0.0385368	0.0474742	0.437935	113.305	122.494	0.244577	0.44736	1.81275	2.17543	62.9416	33.9346	0.433574	0.647811	0	0.143028
Blast
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BLAST of TCONS_00023280 vs. Swiss-Prot (Human)
Match: CTHR1 (Collagen triple helix repeat-containing protein 1 OS=Homo sapiens GN=CTHRC1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.809e-23
Identity = 50/118 (42.37%), Postives = 74/118 (62.71%), Query Frame = -3 
Query:  328 CTFKKESPSTYLKVVVSSDMRLFNCNNCCKRWFVTFDGHECA-PVPIDGIVNIDIGAG--NNRQNLHRPRVIRGHCKISKKQQVNVALNVGDCTIRPGGDAYTGWQSSTRIYIEEVDR 672
            CTF K   ++ L+V+ S  +RL   N CC+RW+ TF+G EC+ P+PI+ I+ +D G+   N+  N+HR   + G C+      V+VA+ VG C+  P GDA TGW S +RI IEE+ +
Sbjct:  126 CTFTKMRSNSALRVLFSGSLRLKCRNACCQRWYFTFNGAECSGPLPIEAIIYLDQGSPEMNSTINIHRTSSVEGLCEGIGAGLVDVAIWVGTCSDYPKGDASTGWNSVSRIIIEELPK 243
The following BLAST results are available for this feature:
BLAST of TCONS_00023280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTHR12.809e-2342.37Collagen triple helix repeat-containing protein 1 ... [more]
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