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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023316 ID=TCONS_00023316|Name=TCONS_00023316|organism=Clytia hemisphaerica|type=transcript|length=2535bp
aacaaatcgaaaatgttgaagaaaatgccataatttGGAGACAAaGAAGA
AAATAATAATGGCGGATGAAGATGGGGGAGGAGAAGTGGTTGGAAGCTCC
TTCATGAACACATTTATTTTGATGGAAGAACTTCTTGATAAACTTAAACT
TTTAGGCTATGAAAAAGAATTCTGCAGAGGTTGGGGCTTCAAAGCATTTT
CAAGACATTATTTTGCTGTACCTACGAACCCAGGAGAACAATTTTTTGCT
TTTACAAATATTGTAGCTTGGCTGTTAAACCAATGCTCGAAATCTTTTGA
TCGACCCCAAGAATATGACGACCCAAATGCTACCATATCAGAAATTCTAG
ACCAATCCAGATCTCTAGGTATAACAGTTGATTTCCCACCAGCAAAATTG
AAATCTGGTCATGGAGAGCAAGTGATTTACTTGGTGAATAAATTGTGTTG
CGAGGCTTTGAAGTCTCAAATGTTTTCATGGAAGAGGCCGGAATATATGG
AAGAAGAGGAAGCTGAGGAGAATATTGTGGAAGATGACGCAGAGTTGACC
ATGGATAAATTAAACGACGAACTGgctgaagaaattgaagaagaagcTGA
TGAAGAAGAAGCCTATCTTGATCTCTCTGGTatgaaacaacaaaattttg
ccaatGATTTTGGTACGAAACCAGAATCCATGTTGGAATCTAATGTTGAT
GCAAATGAATGGAAATTGGAAATTGAACGTGTTTTACCCTTACTGAAAGT
TCATATTCGTGCTGATAATAAAGATTGGAGGAACCATTACGAGCAGATGC
AGCAGTATAGTACTGGTATTTCACAAACATTGCAAGAGACTCAAACTCAA
CTTGATAAGTTACATCAGGAGATTAGTAAGACTCTGGAAAAAGTAGCAAG
CCGTGAAAAATATATCAACAACCAGTTGGAAGGTAAAATCCAAGATTTCC
GCTCAAAGCAAGATAATTTGGCTGTATTGAAGGAAAAATATAACCAAAGC
AGTGGCGGTGTTACAGAGTTGACACAACAGTTGTCACAAATCACAGATGA
GCTTGAGCAAGTGAAAATACAGATGGATGAGAGAGGAACCAATATGACGG
ATGCTGGCCCCTTGGTAAGAATCAAGCAAGCGCTCTCAAAACTCAAACAA
GAGTGTATAGAGATGGATTTGGAAGTCGGTGTCTTGGAGCATGCTTTGCT
TCAAGGGAAAGTTCGAGAAAAACTTGGATTGGAAGACAAAGTCAATAGAA
TTAAATCAGCAAAAACATCTGAATTATAAAGTTagaaaaggatttttttt
ttcaaaaatgatttttatcttttttttctttttaaaaatatggCATGTAC
AataagttgtaaaattttatgtTAATATAATGATTActccaaaagatttt
tatttgcTTGGATTTGGAACCAAGACTTGTCAGTTTATTATAATAACCAA
TAACCAATAGCCAATGATAAGATACTCTGTATAACTTTAGACCTATGTTT
AAAAAGTTAGGCCTGACAATTCAGATTAggatatcttttttttaatgaac
gGAACTTTTTAGCAGCTCGACGAAGACTATATTTTTGTCTCAGAGTTTCG
TCAAAGAACGAAAGTTTTGGAGTCATCAGTTATCCTTTTTACATtgttaa
agaaatttttagtaGAGAGCAGCCATGATTCTTTGAAATGTGACCTTTTA
ATGGAATCAATATCATAAACAATCTAAATTAGTAAGTTTTGCATAACCTT
CTAAAAACTGTATAACAATCATGTTTGGAAAGAGATTATACTGACCCTAC
ATGTTTGCTTAGTCTACTATGTCATAACCCTTCTCGTCTTAAACTATAGA
TTTTCCCCCTTTTTATTTGACCTTTCAACAAATCGTTTTGCATCCTTTTA
TCAATTCTACTGcacgatttttttataagaacatccaaaatatttgaagc
cttgggatattcttaactttttgagttttaagcctaaaaatgttcttaaa
cattttcatattttcgccatttgttgaatatttttgtgatattttccttt
gaaatcggGTGCTTTAAGGTctgcaaagtcttaaaatgtccTTAACTTTG
ACACTTTTGCCATCagagccttatgttcttatatagtttgttcttataaa
aaaactgagcGAGAGTTGTCAATAACCACTAGAAAAGATTGTACAACAGC
AGGCCAATCATTTCATCAATTGAAAGATTGTCTTCGTATTTCAACGACAT
TGAAAAGTGATAACCTAACCTTTGCCTACAGTTCAAAATATAATacgatt
ttttaaaattcattatATTTATATTTCTTGTAACTTTTTGCCCCTTAATG
ACTGGTTGTGATTCAATCAATCAATGCGTTCTGTTTAATCTAAGCTGACA
ACAAGTGTCAACAATAAAGTTTGTAGTTGGTTTTATCATAAAGAAACTTT
ATCCTGCCTGCTCAccgtttttatttattttggcaaaaagtaTTATCATT
ATATGAAAAAAGAGAGCTGTCACATTTTATGATAT Run BLAST on NCBI transcript from alignment at sc0000450:195436..199706- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023316 ID=TCONS_00023316|Name=TCONS_00023316|organism=Clytia hemisphaerica|type=transcript|length=4271bp|location=Sequence derived from alignment at sc0000450:195436..199706- (Clytia hemisphaerica)
AACAAATCGAAAATGTTGAAGAAAATGCCATAATTTGGAGACAAGTGAGT
ATTATAAAAATCGTATCGATAAAATAGATAGGTGGTTAGTGATCACCTTC
GATTATTATATCGGTCATTATTGATTATTCGATCACAATCGAACGTTCAA
TTAGTACCTTCTGGTTTAAACTAGACATTTTTCAAGCTTGGACAGTCAAG
TAATTCCCTCAATTACACAAATGTTGCCAGTAAACTGTCTACCGGATTAT
TTCCTGCTGTAATTGATGGATTACTCAACAAGAGTGTTACCAGCAAGATG
CCAATAGTTTTGCCAGTATAAATCTGGAAGATTTTTATATACTTATCGCT
TGGAGACTCACATTTGTCCTTCTAAGCCAGTTTTTTGTGTGTAAATTTTC
AATTTTTGATTTGCAAAAGTTTATGCTTGCTAAAAAAGATTTGTCCCTGT
ATTTTGAATACTGCAATTTTTGGCCCTTACAAAACTTTTCTTCTTGCAAA
AGTTTACACACTGTTACACACCTAAAAAAACTTCCAAACTCATTGTTTAG
CCATATTAGAATTTAAACACATGTTAGTAATTGATAATTTGAATTTAGCC
TGGGAATGCATGCTCATAATATTAGAAAAAAACAAAAAATACCTCACCTC
GCAAAGTTGTTTATAGAGCATGGTGCAGGTAAATTAGTCTGACACAGAAT
GTTATAAACAGTCTGTGTGTGAACCCTTGTTGACAGATTTCCTGAACTTT
GGAAACCCAGGCAAACACACATAATCAACTTACCATAAAAAGTCTTTCAC
AAGCCCTAAAGACTTTCAAAACAACTAAAAAAAACATCAAAACATCAGCC
ACATGAGTTCCAGTCAACAGCCATTTTGTTTCTAAATGAATCTATGTTTT
CATTTTCATTTGTTTTCCTTTTTTTGCAGAGACAACTTTTTCCATAAGTT
ATGTGCGCGCATCGAAATTATAAAAATGCGCGCAAAAGTACTGCTAAATA
GTTCGCACAAAATCTGGCCAATCAGACTGAATATTGCATTGCAGGGAAAA
ATCTCCCTGCAGGTGAGTTACCTGCGTCAAAAAACAAACAAGCAGCAAAA
TATCATAAGCTAGACTGTGGAAAAAGTTTAACGCTTGGATTCCCAGCCTA
ATTTGAATTGAAAAATATGTAAGATGATATGACACCATCCTGCATCATTA
TGTATTTTAAGTCATCAATGTAAATTTCACTCATTTTCAGCATTGATAGT
AACTGTAATAAAGCTTCATAAAAACACACAAAAAAAAAAGTTACATTTTC
TAGGATTAGAAGTTAGCGTATTGAACTTGACAGTACCTATCTGCCTCTAA
AAGATGGTACCTCTTTACCAATAAAGAAGTTTCTAGCATCAAAGGAAAAA
GTTGTTTTTCTTCTCCTTTTTCATTTCCATTTTGAATTATTTTTCTCAAA
GATTGTAGTGCTAAATTATACTTTTCAACAGTAGATATTTTTTTAGAATT
GAAATACTAGTTGAAAAATGGCACAATGGCAAGCAAAACAAGAGTTAATG
CACACCTAGGCAAATGGACTCTCGAAAGTTGAAAATCATGTTCTGTGCAA
TCATGCTTCTATAAAATTTGAAAGAAGATCTTTTCTTTGCCATTTTCAAT
TTTCTGAACTATTATAATTACTCCAGATAAATATTGACTATTAAGAAGCT
TTGTGCACTAGGTTTAAAAAGACCACTGAATTATTGTTAAACCTTAATTA
TAAATAATAAATTGCTTTTGATAATTTTAGAGAAGAAAATAATAATGGCG
GATGAAGATGGGGGAGGAGAAGTGGTTGGAAGCTCCTTCATGAACACATT
TATTTTGATGGAAGAACTTCTTGATAAACTTAAACTTTTAGGCTATGAAA
AAGAATTCTGCAGAGGTTGGGGCTTCAAAGCATTTTCAAGACATTATTTT
GCTGTACCTACGAACCCAGGAGAACAATTTTTTGCTTTTACAAATATTGT
AGCTTGGCTGTTAAACCAATGCTCGAAATCTTTTGATCGACCCCAAGAAT
ATGACGACCCAAATGCTACCATATCAGAAATTCTAGACCAATCCAGATCT
CTAGGTATAACAGTTGATTTCCCACCAGCAAAATTGAAATCTGGTCATGG
AGAGCAAGTGATTTACTTGGTGAATAAATTGTGTTGCGAGGCTTTGAAGT
CTCAAATGTTTTCATGGAAGAGGCCGGAATATATGGAAGAAGAGGAAGCT
GAGGAGAATATTGTGGAAGATGACGCAGAGTTGACCATGGATAAATTAAA
CGACGAACTGGCTGAAGAAATTGAAGAAGAAGCTGATGAAGAAGAAGCCT
ATCTTGATCTCTCTGGTATGAAACAACAAAATTTTGCCAATGATTTTGGT
ACGAAACCAGAATCCATGTTGGAATCTAATGTTGATGCAAATGAATGGAA
ATTGGAAATTGAACGTGTTTTACCCTTACTGAAAGTTCATATTCGTGCTG
ATAATAAAGATTGGAGGAACCATTACGAGCAGATGCAGCAGTATAGTACT
GGTATTTCACAAACATTGCAAGAGACTCAAACTCAACTTGATAAGTTACA
TCAGGAGATTAGTAAGACTCTGGAAAAAGTAGCAAGCCGTGAAAAATATA
TCAACAACCAGTTGGAAGGTAAAATCCAAGATTTCCGCTCAAAGCAAGAT
AATTTGGCTGTATTGAAGGAAAAATATAACCAAAGCAGTGGCGGTGTTAC
AGAGTTGACACAACAGTTGTCACAAATCACAGATGAGCTTGAGCAAGTGA
AAATACAGATGGATGAGAGAGGAACCAATATGACGGATGCTGGCCCCTTG
GTAAGAATCAAGCAAGCGCTCTCAAAACTCAAACAAGAGTGTATAGAGAT
GGATTTGGAAGTCGGTGTCTTGGAGCATGCTTTGCTTCAAGGGAAAGTTC
GAGAAAAACTTGGATTGGAAGACAAAGTCAATAGAATTAAATCAGCAAAA
ACATCTGAATTATAAAGTTAGAAAAGGATTTTTTTTTTCAAAAATGATTT
TTATCTTTTTTTTCTTTTTAAAAATATGGCATGTACAATAAGTTGTAAAA
TTTTATGTTAATATAATGATTACTCCAAAAGATTTTTATTTGCTTGGATT
TGGAACCAAGACTTGTCAGTTTATTATAATAACCAATAACCAATAGCCAA
TGATAAGATACTCTGTATAACTTTAGACCTATGTTTAAAAAGTTAGGCCT
GACAATTCAGATTAGGATATCTTTTTTTTAATGAACGGAACTTTTTAGCA
GCTCGACGAAGACTATATTTTTGTCTCAGAGTTTCGTCAAAGAACGAAAG
TTTTGGAGTCATCAGTTATCCTTTTTACATTGTTAAAGAAATTTTTAGTA
GAGAGCAGCCATGATTCTTTGAAATGTGACCTTTTAATGGAATCAATATC
ATAAACAATCTAAATTAGTAAGTTTTGCATAACCTTCTAAAAACTGTATA
ACAATCATGTTTGGAAAGAGATTATACTGACCCTACATGTTTGCTTAGTC
TACTATGTCATAACCCTTCTCGTCTTAAACTATAGATTTTCCCCCTTTTT
ATTTGACCTTTCAACAAATCGTTTTGCATCCTTTTATCAATTCTACTGCA
CGATTTTTTTATAAGAACATCCAAAATATTTGAAGCCTTGGGATATTCTT
AACTTTTTGAGTTTTAAGCCTAAAAATGTTCTTAAACATTTTCATATTTT
CGCCATTTGTTGAATATTTTTGTGATATTTTCCTTTGAAATCGGGTGCTT
TAAGGTCTGCAAAGTCTTAAAATGTCCTTAACTTTGACACTTTTGCCATC
AGAGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAACTGAGCGAGA
GTTGTCAATAACCACTAGAAAAGATTGTACAACAGCAGGCCAATCATTTC
ATCAATTGAAAGATTGTCTTCGTATTTCAACGACATTGAAAAGTGATAAC
CTAACCTTTGCCTACAGTTCAAAATATAATACGATTTTTTAAAATTCATT
ATATTTATATTTCTTGTAACTTTTTGCCCCTTAATGACTGGTTGTGATTC
AATCAATCAATGCGTTCTGTTTAATCTAAGCTGACAACAAGTGTCAACAA
TAAAGTTTGTAGTTGGTTTTATCATAAAGAAACTTTATCCTGCCTGCTCA
CCGTTTTTATTTATTTTGGCAAAAAGTATTATCATTATATGAAAAAAGAG
AGCTGTCACATTTTATGATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023316-exon-sc0000450-1575043694:199663..199706 | TCONS_00023316-exon-sc0000450-1575043694:199663..199706 | Clytia hemisphaerica | exon |
| TCONS_00023316-exon-sc0000450-1575043694:195436..197926 | TCONS_00023316-exon-sc0000450-1575043694:195436..197926 | Clytia hemisphaerica | exon |
| TCONS_00023316-exon-sc0000450-1510915933:199663..199706 | TCONS_00023316-exon-sc0000450-1510915933:199663..199706 | Clytia hemisphaerica | exon |
| TCONS_00023316-exon-sc0000450-1510915933:195436..197926 | TCONS_00023316-exon-sc0000450-1510915933:195436..197926 | Clytia hemisphaerica | exon |
| TCONS_00023316-exon-sc0000450-1491911889:199663..199706 | TCONS_00023316-exon-sc0000450-1491911889:199663..199706 | Clytia hemisphaerica | exon |
| TCONS_00023316-exon-sc0000450-1491911889:195436..197926 | TCONS_00023316-exon-sc0000450-1491911889:195436..197926 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:195436..199706 - |
Blast
BLAST of TCONS_00023316 vs. Swiss-Prot (Human)
Match: IFT57 (Intraflagellar transport protein 57 homolog OS=Homo sapiens GN=IFT57 PE=1 SV=1) HSP 1 Score: 366.696 bits (940), Expect = 2.255e-117 Identity = 210/391 (53.71%), Postives = 285/391 (72.89%), Query Frame = 2
Query: 71 DGGGEVV-----GSSFMNTFIXXXXXXXXXXXXXXXXXFCRGWGFKAFSRHYFAVPTNPGEQFFAFTNIVAWLLNQCSKSFDRPQEYDDPNATISEILDQSRSLGITVDFPPAKLKSGHGEQVIYLVNKLCCEALKSQMFSWKRPXXXXXXXXXXXXXXXXXXLTMDKLNXXXXXXXXXXXXXXXXXXXXSGMKQQNFANDFG--TKPESMLESNVDANEWKLEIERVLPLLKVHIRADNKDWRNHYEQMQQYSTGISQTLQETQTQLDKLHQEISKTLEKVASREKYINNQLEGKIQDFRSKQDNLAVLKEKYNQSSGGVTELTQQLSQITDELEQVKIQMDERGTNMTDAGPLVRIKQALSKLKQECIEMDLEVGVLEHALLQGKVREK 1222
+G GEVV G+++ + F++ME+L++KLKLL YE+EF R KA SRHYFA+PTNPGEQF+ F + AWL+N+ + F++PQEYDDPNATIS IL + RS G T DFPP+KLKSG+GE V Y+++ EALK F+WKRP Y EE EE++ EDDAELT++K+++E EE + + +K Q + D K E +LES DA EW LE+ERVLP LKV IR DNKDWR H +QM Q+ +GI L+ET+ LDKLH EI++TLEK++SREKYINNQLE +Q++R+ Q L+ KE+Y Q +GGVTE T+ LS++ +ELE+VK +M+E+G++MTD PLV+IKQ+L+KLKQE +EMD+ +G++EH LLQ K++EK
Sbjct: 23 EGTGEVVLERGPGAAY-HMFVVMEDLVEKLKLLRYEEEFLRKSNLKAPSRHYFALPTNPGEQFYMFCTLAAWLINKAGRPFEQPQEYDDPNATISNILSELRSFGRTADFPPSKLKSGYGEHVCYVLDCFAEEALKYIGFTWKRPIYPVEELEEESVAEDDAELTLNKVDEEFVEEETDNEENFIDLNV---LKAQTYHLDMNETAKQEDILESTTDAAEWSLEVERVLPQLKVTIRTDNKDWRIHVDQMHQHRSGIESALKETKGFLDKLHNEITRTLEKISSREKYINNQLENLVQEYRAAQAQLSEAKERYQQGNGGVTERTRLLSEVMEELEKVKQEMEEKGSSMTDGAPLVKIKQSLTKLKQETVEMDIRIGIVEHTLLQSKLKEK 409
The following BLAST results are available for this feature:
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