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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023321 ID=TCONS_00023321|Name=TCONS_00023321|organism=Clytia hemisphaerica|type=transcript|length=2666bpRun BLAST on NCBI protein sequence of TCONS_00023321-protein >TCONS_00023321-protein ID=TCONS_00023321-protein|Name=TCONS_00023321-protein|organism=Clytia hemisphaerica|type=polypeptide|length=374bp MSAMQRDIMKSKLPPLPSKPVGQASRFSSLVPKRNVKDYSPSSWEGYFDKRun BLAST on NCBI transcript from alignment at sc0000450:248187..258125- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023321 ID=TCONS_00023321|Name=TCONS_00023321|organism=Clytia hemisphaerica|type=transcript|length=9939bp|location=Sequence derived from alignment at sc0000450:248187..258125- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000450:248187..258125- >TCONS_00023321 ID=TCONS_00023321|Name=TCONS_00023321|organism=Clytia hemisphaerica|type=CDS|length=19125bp|location=Sequence derived from alignment at sc0000450:248187..258125- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00023321 vs. Swiss-Prot (Human)
Match: PPME1 (Protein phosphatase methylesterase 1 OS=Homo sapiens GN=PPME1 PE=1 SV=3) HSP 1 Score: 364.385 bits (934), Expect = 1.455e-116 Identity = 182/348 (52.30%), Postives = 246/348 (70.69%), Query Frame = 1
Query: 133 KDYSPSSWEGYFDKQHDVKV----GENTFRLYTRGTDGPXXXXXXXXXXSALSWAVFTKTLCDMCDCQVAAIDFRGHGDSSTTNDTNMAADVMAYDICHVILNFYDQSPPPIVMMGHSMGGAIAVHIAAKKILPNLSGLAVIDVVEGTALDALSSMQSFLRSRPQKFSSLKQAIEWSIRSGQLRNLTSAKISMAGQLKKVEGTSSQSSN------VSLDIXXXXXXXXXXXXXXXXXXXXXXXXXXYTWRVDLAETEKYWKGWFENMSSLFVSCPVPKLLLLAGIDRLDKDLTIGQMQGKFQMQVLPNCGHMVHEDVPDKVAEILTAFLLRQKLTVAKSNFERHTPSC 1146
+D+SP W YF+ DV+V G++TFR+Y G++GPV+LLLHGGGHSALSWAVFT + C++ A+D R HG++ N +++A+ MA D+ +V+ Y PPPI+++GHSMGGAIAVH A+ ++P+L GL +IDVVEGTA+DAL+SMQ+FLR RP+ F SL+ AIEWS++SGQ+RNL SA++SM GQ+K+ EG +S + + + E+ E + +++ YTWR++LA+TEKYW GWF +S+LF+SCP+PKLLLLAG+DRLDKDLTIGQMQGKFQMQVLP CGH VHED PDKVAE + FL+R + F+ P C
Sbjct: 39 RDFSPVPWSQYFESMEDVEVENETGKDTFRVYKSGSEGPVLLLLHGGGHSALSWAVFTAAIISRVQCRIVALDLRSHGETKVKNPEDLSAETMAKDVGNVVEAMYGDLPPPIMLIGHSMGGAIAVHTASSNLVPSLLGLCMIDVVEGTAMDALNSMQNFLRGRPKTFKSLENAIEWSVKSGQIRNLESARVSMVGQVKQCEGITSPEGSKSIVEGIIEEEEEDEEGSESISKRKKEDDMETKKDHPYTWRIELAKTEKYWDGWFRGLSNLFLSCPIPKLLLLAGVDRLDKDLTIGQMQGKFQMQVLPQCGHAVHEDAPDKVAEAVATFLIRHRFAEPIGGFQCVFPGC 386 The following BLAST results are available for this feature:
BLAST of TCONS_00023321 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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