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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023332 ID=TCONS_00023332|Name=TCONS_00023332|organism=Clytia hemisphaerica|type=transcript|length=1622bp
NNGGTCTTCATTTGATCATTGTACTTCTTGTTGATCTTTGCTGTTGCTTC
TTTAGCACATTCTGAAGATTGGCTACATCCTTGTTTCAGCTTGTTCATGT
GTTCTTCTGAAATCCTTTCAAGATTGCCTTGTTTTCTAAGCAATTGATCA
ACTAGCACAAAGGACTCGTGAAAAGCTTTGCTGATATCTTCATTAGAGGA
ATCATTCTGCAACTgatcaaaaatatctttaaattcttttgcTTTATTCA
TTTTGCATATCCTGAAAAAGGTTGATAAGTACTTTTCAGCTATTTTGAAG
CAGTAGCCGTAGCTGTAGTCGTAGCCGTAGCTATAGCTTGAAACTATAAT
TGCTCTTCTCAATAATAATACCTCAAAAAGGATAACACCTACCTTTTGAT
CTTATTTTAAACGAGATCTGTAGAAAGTTGAAGGGACAACTGTCAAGTAA
AAACTACCACatattaaaaaatggaaaaaattgtcaTATTTCCAAAACTA
AAAGGTGCTATATGTATTATTATTACCCCTCATTGAAAAGAAACTATAAA
TATACAAATAAATCTTGGGCCAAAAGGGTTCTCACAGGACAAGGTTACCA
TCGAATGACTCTTCCAAAGGGAGTTTTGCTAAGTACAAAATGTTCAAGTt
tgtgaaaatcaaaatttgaactGCAATtgctattttttgaaagaattttt
caacttcaaaacatgatttgatttgaaaacttttgctcattttttgcttt
atttcttttaacttttccatggtcgttttgttttgattttccacaCGCTG
AAACCAGTCCCCCAAATACCCGGTCATATTTTGCACATGTCAAATATCAT
ATATTGCATTTATTTCGTAGATcttgaccaatcaaaatgcCTATATTTTT
CAGTAGTTGTGAACTATGTAAAGCTTCAATCTGATTGGCTGCTGAGAATA
TCACAAGAACTAAGGCTAAAAGCAAACCACAGGCTAGTGCCAGCAAGTGA
TGAAATATAACTTCAAAAATAAGTTCAAAATTGTGTGATCAAATCTATTC
TTTGTGGTCTTGTGTCCGTTCAGCAAGaatcaaaaaaaaagatcataaaa
AAATCTTGTGATTTCTGTGTTCTTGTGCctgttcaaaaaaaataaaactg
agagcccaaatcttgtgttctctgtgttcttgtttCCATTTCATCTTTGT
ATGGAATGGAGGTCCTGGCCCTGGCAGATCTGAAGTTTCTTGTTTGTTGT
TTCTTGTGAATCTCTCAAATTGCCCCATGCTCCAAAAAAGGTcaagttaa
aatcaaaatacaacttacagggctcgaaataacggtcggacatcggacat
tgtccgacccaattgctgaaatgtccgacccaaatcgattctagtcggac
atcatgtccgacccaattacTTTTGGTGCCTTcgaaaaatttgtcagatg
cgatgtgaaattttcaaaagaaattgtaatttacatagaattagtaactt
ctttatttacacacaaaaactctcaaagttgcgatcattagtgttagata
ttcattttgtgtgatgctttttctcaacaaatgaacgcatgcttcaagta
aaaatcatgggcttctgaccat Run BLAST on NCBI transcript from alignment at sc0000450:18260..19881 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023332 ID=TCONS_00023332|Name=TCONS_00023332|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at sc0000450:18260..19881 (Clytia hemisphaerica)
atggtcagaagcccatgatttttacttgaagcatgcgttcatttgttgag
aaaaagcatcacacaaaatgaatatctaacactaatgatcgcaactttga
gagtttttgtgtgtaaataaagaagttactaattctatgtaaattacaat
ttcttttgaaaatttcacatcgcatctgacaaatttttcgAAGGCACCAA
AAgtaattgggtcggacatgatgtccgactagaatcgatttgggtcggac
atttcagcaattgggtcggacaatgtccgatgtccgaccgttatttcgag
ccctgtaagttgtattttgattttaacttgACCTTTTTTGGAGCATGGGG
CAATTTGAGAGATTCACAAGAAACAACAAACAAGAAACTTCAGATCTGCC
AGGGCCAGGACCTCCATTCCATACAAAGATGAAATGGaaacaagaacaca
gagaacacaagatttgggctctcagttttattttttttgaacagGCACAA
GAACACAGAAATCACAAGATTTttttatgatctttttttttgattCTTGC
TGAACGGACACAAGACCACAAAGAATAGATTTGATCACACAATTTTGAAC
TTATTTTTGAAGTTATATTTCATCACTTGCTGGCACTAGCCTGTGGTTTG
CTTTTAGCCTTAGTTCTTGTGATATTCTCAGCAGCCAATCAGATTGAAGC
TTTACATAGTTCACAACTACTGAAAAATATAGgcattttgattggtcaag
ATCTACGAAATAAATGCAATATATGATATTTGACATGTGCAAAATATGAC
CGGGTATTTGGGGGACTGGTTTCAGCGtgtggaaaatcaaaacaaaacga
ccatggaaaagttaaaagaaataaagcaaaaaatgagcaaaagttttcaa
atcaaatcatgttttgaagttgaaaaattctttcaaaaaatagcaATTGC
agttcaaattttgattttcacaaACTTGAACATTTTGTACTTAGCAAAAC
TCCCTTTGGAAGAGTCATTCGATGGTAACCTTGTCCTGTGAGAACCCTTT
TGGCCCAAGATTTATTTGTATATTTATAGTTTCTTTTCAATGAGGGGTAA
TAATAATACATATAGCACCTTTTAGTTTTGGAAATAtgacaattttttcc
attttttaatatGTGGTAGTTTTTACTTGACAGTTGTCCCTTCAACTTTC
TACAGATCTCGTTTAAAATAAGATCAAAAGGTAGGTGTTATCCTTTTTGA
GGTATTATTATTGAGAAGAGCAATTATAGTTTCAAGCTATAGCTACGGCT
ACGACTACAGCTACGGCTACTGCTTCAAAATAGCTGAAAAGTACTTATCA
ACCTTTTTCAGGATATGCAAAATGAATAAAgcaaaagaatttaaagatat
ttttgatcAGTTGCAGAATGATTCCTCTAATGAAGATATCAGCAAAGCTT
TTCACGAGTCCTTTGTGCTAGTTGATCAATTGCTTAGAAAACAAGGCAAT
CTTGAAAGGATTTCAGAAGAACACATGAACAAGCTGAAACAAGGATGTAG
CCAATCTTCAGAATGTGCTAAAGAAGCAACAGCAAAGATCAACAAGAAGT
ACAATGATCAAATGAAGACCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023332-exon-sc0000450-1491911889:18260..19881 | TCONS_00023332-exon-sc0000450-1491911889:18260..19881 | Clytia hemisphaerica | exon |
| TCONS_00023332-exon-sc0000450-1510915933:18260..19881 | TCONS_00023332-exon-sc0000450-1510915933:18260..19881 | Clytia hemisphaerica | exon |
| TCONS_00023332-exon-sc0000450-1575043694:18260..19881 | TCONS_00023332-exon-sc0000450-1575043694:18260..19881 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000450 | supercontig | sc0000450:18260..19881 . |
Blast
The following BLAST results are available for this feature:
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