TCONS_00023364 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023364
Unique NameTCONS_00023364
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length993

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023364 ID=TCONS_00023364|Name=TCONS_00023364|organism=Clytia hemisphaerica|type=transcript|length=993bp
AAAAAAACAGAGGAATGATCTGGAGCTTGAATGTTGGTTGCACATTAATG
CTGATGATGTTGTTGGCTTTACCAATGTCTATGGTCGTTATTGGAGTGTC
ATACAAAGATTTTTGTCCGATCGAACCATTCATTCCGATCTATCTCATTG
TCGGTGGATCGTTCGGTATCATCAAAATGCTCTCCATCATAATTCAGCGA
ATCACATATAACGGAGATATCTTTCAAAGTGATAAAAGCAACGAGGAGGA
GCGTCCAATCGCATGGTTGTTCGTTGACGGCGTATTAAACTTGTTTTTAT
TCACGTGGTTCGTGGCGGGAAATATATGGGTGTATTCCAAATATAAACCA
AATTACACGCCTCCGCCTCATCAACCATTCAACTATTGTAATAAGACTGT
GTACGTGTTTGCTTTTTGGGTAATCACAACCAGTTACCTGATGTTGGGAT
TGATTTGTTTGTGCACGTGTTGCTTGGCCGCGTGCGCGAGCTGTACGGCG
TTCTTTTTAACGAAAGCATCGAATTCAGAGGCGGGTGCAGAAGATGAGGT
GAATGGTGGTGATAGGTTTATTGATAACCGGTTTCGATAAAGAATCTATG
CTTCATGTTGTTTGGTGTAATTTTGTCTGAATTCAATATTTCTGAGAAAT
ATCACTATGTGATTTATTGTGATGTTCGAATCTTGCTATCTGAAAGAGAA
AATTATTTACTGGTCAATATGTAACTCATTGGGAAATATTGTTAGACCTT
CATTTCTTTGTTGGCAGGATAGAGATAATCAAATAAGGTTTTTTATTAAT
TGATTAATTTATGACGTAATAACCTTTCACGGGGTCAAAAGTTCTTAGAT
TCATACAACATTCATCAAACATTCATCAAAAACCACCTAAGGCCTAGATA
ACCCTCAGTGACCAGGGTAAGTTTTGAAATTCACCGgctatgaaaaaaga
aaaatcacatCGGGTTGTCGGTGTCGACATCTTAAAAACTAGT
Run BLAST on NCBI

transcript from alignment at sc0000452:256039..257909+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023364 ID=TCONS_00023364|Name=TCONS_00023364|organism=Clytia hemisphaerica|type=transcript|length=1871bp|location=Sequence derived from alignment at sc0000452:256039..257909+ (Clytia hemisphaerica)
AAAAAAACAGAGGAATGATCTGGAGCTTGAATGGTATCTATTCAATttgt
ttgaatttcaaatgttttcttcttatatatttcaacatttttgtgtACAT
GGGAGATGGGGGTGCCTAAAGATCAATTTTATTAttacaaaaaattgatt
gataGTAAAACTTGAAGTATTGCTTTATATTTTTAGTTGGTTGCACATTA
ATGCTGATGATGTTGTTGGCTTTACCAATGTCTATGGTCGTTATTGGTAA
GGATAATGCTACCATCCAACTTTCTTATAGCTGTTGAACGCAACCAATCA
ATCCAGACCCGCCATAACTCTATATTTTTACATGGCAATAAACGGACTTT
AATTTATTTAACACGATGTCCATATTTACCACGATcggctaccgtgaaaa
gcacagctcaaaatcatatatttatgCTGTGcagacgaatcgagattcta
ttcatcgcgcaatcagcgaagacaaaagtaaccatgacgaccatccaaga
tcttggatgagcgtcatagtcgatatttttattcccgtcgttgaaaacat
tatttgtcttcagaggttactattttctttgaaaacttaacctctgatac
tcagggtaacgATCGGCTACTACCTAAGATTTGAACAGAACATTCATTCC
TTGTTTATTGCCGAGGACATGTCTGTTTCAGTTAGTTCATTAAGtctcaa
aaattggaaaatcacTGGAAAAAACATAATTTGTGCCTGGGAGATGCCTT
GTAGACTATAGACTGTGATTGTTAAGGTTATGATATTGTATTAATGTGAA
TTCAAATATATGAAAAATCTATATACCATTGATATCTGAAATACCACGCC
ATACCAAAGATATCTCAATATAAATATAGCCAATCGCTGTCCGTTTCAAA
GGTTTCCCCACTCTTTAGAGGTCCCCCTTTAGAACATGTTAATCAAAATT
GTAATAACTTTATTTCTATAGGAGTGTCATACAAAGATTTTTGTCCGATC
GAACCATTCATTCCGATCTATCTCATTGTCGGTGGATCGTTCGGTATCAT
CAAAATGCTCTCCATCATAATTCAGCGAATCACATATAACGGAGATATCT
TTCAAAGTGATAAAAGCAACGAGGAGGAGCGTCCAATCGCATGGTTGTTC
GTTGACGGCGTATTAAACTTGTTTTTATTCACGTGGTTCGTGGCGGGAAA
TATATGGGTGTATTCCAAATATAAACCAAATTACACGCCTCCGCCTCATC
AACCATTCAACTATTGTAATAAGACTGTGTACGTGTTTGCTTTTTGGGTA
ATCACAACCAGTTACCTGATGTTGGGATTGATTTGTTTGTGCACGTGTTG
CTTGGCCGCGTGCGCGAGCTGTACGGCGTTCTTTTTAACGAAAGCATCGA
ATTCAGAGGCGGGTGCAGAAGATGAGGTGAATGGTGGTGATAGGTTTATT
GATAACCGGTTTCGATAAAGAATCTATGCTTCATGTTGTTTGGTGTAATT
TTGTCTGAATTCAATATTTCTGAGAAATATCACTATGTGATTTATTGTGA
TGTTCGAATCTTGCTATCTGAAAGAGAAAATTATTTACTGGTCAATATGT
AACTCATTGGGAAATATTGTTAGACCTTCATTTCTTTGTTGGCAGGATAG
AGATAATCAAATAAGGTTTTTTATTAATTGATTAATTTATGACGTAATAA
CCTTTCACGGGGTCAAAAGTTCTTAGATTCATACAACATTCATCAAACAT
TCATCAAAAACCACCTAAGGCCTAGATAACCCTCAGTGACCAGGGTAAGT
TTTGAAATTCACCGgctatgaaaaaagaaaaatcacatCGGGTTGTCGGT
GTCGACATCTTAAAAACTAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013132XLOC_013132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023364-exon-sc0000452-1491911889:256039..256071TCONS_00023364-exon-sc0000452-1491911889:256039..256071Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1510915933:256039..256071TCONS_00023364-exon-sc0000452-1510915933:256039..256071Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1575043694:256039..256071TCONS_00023364-exon-sc0000452-1575043694:256039..256071Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1491911889:256225..256284TCONS_00023364-exon-sc0000452-1491911889:256225..256284Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1510915933:256225..256284TCONS_00023364-exon-sc0000452-1510915933:256225..256284Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1575043694:256225..256284TCONS_00023364-exon-sc0000452-1575043694:256225..256284Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1491911889:257010..257909TCONS_00023364-exon-sc0000452-1491911889:257010..257909Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1510915933:257010..257909TCONS_00023364-exon-sc0000452-1510915933:257010..257909Clytia hemisphaericaexon
TCONS_00023364-exon-sc0000452-1575043694:257010..257909TCONS_00023364-exon-sc0000452-1575043694:257010..257909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:256039..257909 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0512369	0.100255	0	0	0	0	0	0	0	0	0.0890926	0	0.678503	0.375367	0.331033	0	0.734074	0.61323	0	0	0	0.45967	0	0	0	0	1.72018	1.14402
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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