TCONS_00023365 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023365
Unique NameTCONS_00023365
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1048

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023365 ID=TCONS_00023365|Name=TCONS_00023365|organism=Clytia hemisphaerica|type=transcript|length=1048bp
TGTGACTGGATGGCGAAGCGTTCGTTGAAAAATTATTAATTCTTTAGTTA
ATCGACTGATTTTGCTCTCAAAGGTAGCGAATCGAGTGggtaaattaatt
tttaaaattccaTTTAACTTCTTCAGGTTTGCAAACCGTGTGGAATTTGT
GTTAGAGACATAGACAAACACATCAAAAGATACCACGGGAAATTTGGAGC
TGACCATTTAATTTTCAAAGCCATGAACTGTGACATTGCCAAGGTAACAC
CTTTACAAAATTATGTCAAAGGAAATCTCATATGCCCACCTGCACAGAAT
TCGATCAATGAATGTTTGAACGACTACAAGAATGATAAAGCTCCAACGTA
TAAGAAACCATCGTTCGCTATCAACTGTCGTGACATTAAAGAGAGCGATA
TTAGACAACATAAACTGAAAACTCTGACAGACTTTAAACACATCTATGAC
AACTACCGAGCTTTTTCCGAAGATTTCAATGATTGGTTGCAACACGTACT
AAACCATTCCCCTCGAGCATCGAAGCAAATTGTAACAAACCTTCAAGAAA
TATGGCTTTCCGTCGACCCTACACTAACTTTGTACCCGAACAAGCTTTCC
GATACAAATGCTCTTGAAGACTCATTCTTCCTTCCACATTTCACAAAACT
GAAAGACCACAATTTGCAAATGAATCGTTCTAAAAGTCAATTAAAGCCGA
CCACTCTCTGCTCGAAGCTTTCATCTTTGCGGAAACTCATCGAATTCTCT
ACTAGCCGTCAGCTCTTTTTAGGGTTGACCTATCCGGACATGCAGCGTAT
CCGAAGTAAAACTCAAGAATTCAACAGAAGACTCCATCCGTATTGCAAGG
AACGTCAATCTGCAATGCAAGATTTCAAATTGGAGAAATTGATAACGAAC
ACTGATTGCAAGATCTTTGGCAATAGTGACAGGGCAAAAGAGATTTTATC
AAATCTCAATGGTATTGATAAATTCACATCTCCTAATTATACTTCAGAAC
AAGCCATATCTTGTCAAAACTACCTGATGTTTACGCTTTGCATAACAA
Run BLAST on NCBI

protein sequence of TCONS_00023365-protein

>TCONS_00023365-protein ID=TCONS_00023365-protein|Name=TCONS_00023365-protein|organism=Clytia hemisphaerica|type=polypeptide|length=275bp
MNCDIAKVTPLQNYVKGNLICPPAQNSINECLNDYKNDKAPTYKKPSFAI
NCRDIKESDIRQHKLKTLTDFKHIYDNYRAFSEDFNDWLQHVLNHSPRAS
KQIVTNLQEIWLSVDPTLTLYPNKLSDTNALEDSFFLPHFTKLKDHNLQM
NRSKSQLKPTTLCSKLSSLRKLIEFSTSRQLFLGLTYPDMQRIRSKTQEF
NRRLHPYCKERQSAMQDFKLEKLITNTDCKIFGNSDRAKEILSNLNGIDK
FTSPNYTSEQAISCQNYLMFTLCIT
Run BLAST on NCBI

transcript from alignment at sc0000452:13799..15215-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023365 ID=TCONS_00023365|Name=TCONS_00023365|organism=Clytia hemisphaerica|type=transcript|length=1417bp|location=Sequence derived from alignment at sc0000452:13799..15215- (Clytia hemisphaerica)
TGTGACTGGATGGCGAAGCGTTCGTTGAAAAATTATTAATTCTTTAGTTA
ATCGACTGATTTTGCTCTCAAAGGTAGCGAATCGAGTGGGTAAATTAATT
TTTAAAATTCCATTTAACTTCTTCAGGTTTGCAAACCGTGTGGAATTTGT
GTTAGAGACATAGACAAACACATCAAAAGATACCACGGGAAATTTGGAGC
TGACCATTTAATTTTCAAAGCCATGAACTGTGACATTGCCAAGGTAACAC
CTTTACAAAATTATGTCAAAGGAAATCTCATATGCCCACCTGCACAGAAT
TCGATCAATGAATGTTTGAACGACTACAAGAATGATAAAGCTCCAACGTA
TAAGAAACCATCGTTCGCTATCAACTGTCGTGACATTAAAGAGAGCGATA
TTAGACAACATAAACTGAAAACTCTGACAGACTTTAAACACATCTATGAC
AACTACCGAGCTTTTTCCGAAGATTTCAATGATTGGTTGCAACACGTACT
AAACCATTCCCCTCGAGCATCGAAGCAAATTGTAACAAACCTTCAAGAAA
TATGGCTTTCCGTCGACCCTACACTAACTTTGTACCCGAACAAGCTTTCC
GATACAAATGCTCTTGAAGACTCATTCTTCCTTCCACATTTCACAAAACT
GAAAGACCACAATTTGCAAATGAATCGTTCTAAAAGTCAATTAAAGCCGA
CCACTCTCTGCTCGAAGCTTTCATCTTTGCGGAAACTCATCGAATTCTCT
ACTAGCCGTCAGCTCTTTTTAGGTATGTTAGCTTATCATTTTTGGAGTTA
ATAAGTTCTATCCATTATTTGAGAACACATTCAAGATGGCCTAAAGTTGC
TACTAATATTGATTCAAGTCACTGCATGAAATAAGAGGATTAAACATTTT
ATCACTTTTGTAAAGTTGATGTTTACAAAAGGTTAACGCAGCCTAAACTT
GATATGAAGTTTACGCATGCAGGAATATCTTCTCTGCGTAAGCGTAAACT
TAATATGAAGTTTACGCATGCAGGAATATCACTTCTGCGCAATCTATATT
TTGTTAAAAAGAGTATTGTCAGGCTTTATAGAGGTGCTATTAAGTAAGTG
GACATTTTGTATTTAAATAAAGTCTATAATTTACCATTCAGGGTTGACCT
ATCCGGACATGCAGCGTATCCGAAGTAAAACTCAAGAATTCAACAGAAGA
CTCCATCCGTATTGCAAGGAACGTCAATCTGCAATGCAAGATTTCAAATT
GGAGAAATTGATAACGAACACTGATTGCAAGATCTTTGGCAATAGTGACA
GGGCAAAAGAGATTTTATCAAATCTCAATGGTATTGATAAATTCACATCT
CCTAATTATACTTCAGAACAAGCCATATCTTGTCAAAACTACCTGATGTT
TACGCTTTGCATAACAA

Coding sequence (CDS) from alignment at sc0000452:13799..15215-

>TCONS_00023365 ID=TCONS_00023365|Name=TCONS_00023365|organism=Clytia hemisphaerica|type=CDS|length=1650bp|location=Sequence derived from alignment at sc0000452:13799..15215- (Clytia hemisphaerica)
GGTTGACCTATCCGGACATGCAGCGTATCCGAAGTAAAACTCAAGAATTC
AACAGAAGACTCCATCCGTATTGCAAGGAACGTCAATCTGCAATGCAAGA
TTTCAAATTGGAGAAATTGATAACGAACACTGATTGCAAGATCTTTGGCA
ATAGTGACAGGGCAAAAGAGATTTTATCAAATCTCAATGGTATTGATAAA
TTCACATCTCCTAATTATACTTCAGAACAAGCCATATCTTGTCAAAACTA
CCTGATGTTTACGCTTTGCATAACAATGAACTGTGACATTGCCAAGGTAA
CACCTTTACAAAATTATGTCAAAGGAAATCTCATATGCCCACCTGCACAG
AATTCGATCAATGAATGTTTGAACGACTACAAGAATGATAAAGCTCCAAC
GTATAAGAAACCATCGTTCGCTATCAACTGTCGTGACATTAAAGAGAGCG
ATATTAGACAACATAAACTGAAAACTCTGACAGACTTTAAACACATCTAT
GACAACTACCGAGCTTTTTCCGAAGATTTCAATGATTGGTTGCAACACGT
ACTAAACCATTCCCCTCGAGCATCGAAGCAAATTGTAACAAACCTTCAAG
AAATATGGCTTTCCGTCGACCCTACACTAACTTTGTACCCGAACAAGCTT
TCCGATACAAATGCTCTTGAAGACTCATTCTTCCTTCCACATTTCACAAA
ACTGAAAGACCACAATTTGCAAATGAATCGTTCTAAAAGTCAATTAAAGC
CGACCACTCTCTGCTCGAAGCTTTCATCTTTGCGGAAACTCATCGAATTC
TCTACTAGCCGTCAGCTCTTTTTAGGGTTGACCTATCCGGACATGCAGCG
TATCCGAAGTAAAACTCAAGAATTCAACAGAAGACTCCATCCGTATTGCA
AGGAACGTCAATCTGCAATGCAAGATTTCAAATTGGAGAAATTGATAACG
AACACTGATTGCAAGATCTTTGGCAATAGTGACAGGGCAAAAGAGATTTT
ATCAAATCTCAATGGTATTGATAAATTCACATCTCCTAATTATACTTCAG
AACAAGCCATATCTTGTCAAAACTACCTGATGTTTACGCTTTGCATAACA
ATGAACTGTGACATTGCCAAGGTAACACCTTTACAAAATTATGTCAAAGG
AAATCTCATATGCCCACCTGCACAGAATTCGATCAATGAATGTTTGAACG
ACTACAAGAATGATAAAGCTCCAACGTATAAGAAACCATCGTTCGCTATC
AACTGTCGTGACATTAAAGAGAGCGATATTAGACAACATAAACTGAAAAC
TCTGACAGACTTTAAACACATCTATGACAACTACCGAGCTTTTTCCGAAG
ATTTCAATGATTGGTTGCAACACGTACTAAACCATTCCCCTCGAGCATCG
AAGCAAATTGTAACAAACCTTCAAGAAATATGGCTTTCCGTCGACCCTAC
ACTAACTTTGTACCCGAACAAGCTTTCCGATACAAATGCTCTTGAAGACT
CATTCTTCCTTCCACATTTCACAAAACTGAAAGACCACAATTTGCAAATG
AATCGTTCTAAAAGTCAATTAAAGCCGACCACTCTCTGCTCGAAGCTTTC
ATCTTTGCGGAAACTCATCGAATTCTCTACTAGCCGTCAGCTCTTTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013133XLOC_013133Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023365-proteinTCONS_00023365-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023365-exon-sc0000452-1575043694:14444..15215TCONS_00023365-exon-sc0000452-1575043694:14444..15215Clytia hemisphaericaexon
TCONS_00023365-exon-sc0000452-1575043694:13799..14074TCONS_00023365-exon-sc0000452-1575043694:13799..14074Clytia hemisphaericaexon
TCONS_00023365-exon-sc0000452-1510915933:14444..15215TCONS_00023365-exon-sc0000452-1510915933:14444..15215Clytia hemisphaericaexon
TCONS_00023365-exon-sc0000452-1510915933:13799..14074TCONS_00023365-exon-sc0000452-1510915933:13799..14074Clytia hemisphaericaexon
TCONS_00023365-exon-sc0000452-1491911889:14444..15215TCONS_00023365-exon-sc0000452-1491911889:14444..15215Clytia hemisphaericaexon
TCONS_00023365-exon-sc0000452-1491911889:13799..14074TCONS_00023365-exon-sc0000452-1491911889:13799..14074Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000452supercontigsc0000452:13799..15215 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.57974	4.78329	0.813928	0.327889	0	0.0450617	0	0.152688	0.1069	0.132413	0	0.0563241	0.0843688	0.0292059	0	0.0257677	0.0317438	0.097609	0	0.0940753	0.0408843	0	2.23026	2.02763	0	0.121556	0.115964	0	1.64269	1.76927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023365 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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