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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023374 ID=TCONS_00023374|Name=TCONS_00023374|organism=Clytia hemisphaerica|type=transcript|length=1794bp
aaaaatttgccaaaacaGCGTTTTGCGGCAAATTCCTgtcattttcggcc
agaaaacagtttttcttaaaaagttggactcggccatgttttggccATCG
ctaatacacatctttgtgcaaaaaatcagacgGAATAGACCTTATTTCAT
TTAGAAAAAGCGATGCATTCTGGGATTGTTATCGGAGTATTAGAATAGAA
ACCtcgaaattttattgtaatactcccatagcaatcccacaatgcatcgt
tttTATCTAAATGCAATATGGTCtattaatgatgaaatcttcAGAAAATG
CTAAATAACCCGTTTTCCGGCATATATCTAGCAATTTCAGCCGGAAACat
acgttaattgaaaatcgaatttgtcgttattgcccccgcaagagggtagc
gacgaggaggcactcatagtttcacgcatagatattggaatGGCCtgttt
ttatcgttttttcAGTAGAAAACGTACATTGGATGATCTTTCAAAAGATA
CGAACAAGAAACCTGTTCAGAATGatgaaaaatcatcatcatcaaagtCA
TCAACGAGTGACGTAtctccaaagttaaaaaaatgtcCAGAAACAACCAC
CAAAACACCTAAGAAAGATAGTAAGCCCGATAgtaagtttaaaaaaagtt
ttttcttcctTGTTAAATTTCTTATCTTAGCAGAGACAGGTTTTGAGGTA
TGCTTGAATAAATTTATTGAATACAATATCAAAAAGATGGGAACGTTTTA
TGGTTATTTGTAACATACTTGTCATTTAAATTCTCTCTAATAGTCTTATC
CAAGATGTTGTGTTTAAAGGCCAGTTTCCCTTCGGAAGTTCCAAGAAAAA
ATCATCTGCTGACGAAAACTCCACAAATTCCAGTGTTTCTACAATGAGTA
TCCCTAGgtataaattttctttcataTATGTTGTAATCTTTCCAATAGCA
TAAATTTCCCACGAGGAGGTTTTTAATTGAGTATTAGAAAGAATTCGTTT
CTCAGGCTTGAAAAAGTAACACTTTAGCTATTATTATCGTGTTTTTTTCA
GTAGAAAACGTACATTGGATGATCTTTCAAAAGATACGAACAAAAAACCT
GTTCAGAATGatgaaaaatcatcatcatcaaagtCATCAAAGTCATCAAA
GAGTGACGTATCGACCAAAAAATGTTCAGAAACAACCACAAAAACCTCTA
AGAAAGATAGTAAGCTCGATAAgtctaaaaatagtttttccttccttttt
aaatttcttgtcTTAGAATAGACAGGTTTTGCGGAAGGTTTGAATAAATT
TATCGAATACAATATCAAAAAGATGGGACCCATAAAATAACTCAAAGGAC
CAGGGGGTCATGATTACTATAATTAGTAGTTAGTGCATTTTGAGTCCAAA
GTTCTATACCACCGCCCTTTGAATTTAATACGGTATCTTAATCACTGCTT
TTcagttgaaattttgcatacaCTACCCTTTGTGAGCCTTTTGTCCCCAA
AATAGTGGTAGGCCGGTTGAGGAAGTTTTTTAGGCAGTTTGTCGTAGTAA
TCaaaatttaattgtttcttAATTAGGTCAATCTGATGTCACAACTGCTC
AAAGTATCgataattcaattcaaaactcaAGTATCGATCTTACAAGAAGA
ATTCGATTCACCAAAAGCGAAGAACAACAATTGCTGGATGGTGTTAAGGT
ACACGGGGCTGGTAACTGGTCAAAAATCCTCGAAGAGTACAACTTTCATC
CGTCTAGGACAAATATCAGTTTGAAGGACAAATATCAGTTTGAA Run BLAST on NCBI protein sequence of TCONS_00023374-protein >TCONS_00023374-protein ID=TCONS_00023374-protein|Name=TCONS_00023374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MACFYRFFSRKRTLDDLSKDTNKKPVQNDEKSSSSKSSTSDVSPKLKKCP
ETTTKTPKKDSKPDSKFKKSFFFLVKFLILAETGFEVCLNKFIEYNIKKM
GTFYGYL Run BLAST on NCBI transcript from alignment at sc0000452:53197..54990 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023374 ID=TCONS_00023374|Name=TCONS_00023374|organism=Clytia hemisphaerica|type=transcript|length=1794bp|location=Sequence derived from alignment at sc0000452:53197..54990 (Clytia hemisphaerica)
TTCAAACTGATATTTGTCCTTCAAACTGATATTTGTCCTAGACGGATGAA
AGTTGTACTCTTCGAGGATTTTTGACCAGTTACCAGCCCCGTGTACCTTA
ACACCATCCAGCAATTGTTGTTCTTCGCTTTTGGTGAATCGAATTCTTCT
TGTAAGATCGATACTtgagttttgaattgaattatcGATACTTTGAGCAG
TTGTGACATCAGATTGACCTAATTaagaaacaattaaattttGATTACTA
CGACAAACTGCCTAAAAAACTTCCTCAACCGGCCTACCACTATTTTGGGG
ACAAAAGGCTCACAAAGGGTAGtgtatgcaaaatttcaactgAAAAGCAG
TGATTAAGATACCGTATTAAATTCAAAGGGCGGTGGTATAGAACTTTGGA
CTCAAAATGCACTAACTACTAATTATAGTAATCATGACCCCCTGGTCCTT
TGAGTTATTTTATGGGTCCCATCTTTTTGATATTGTATTCGATAAATTTA
TTCAAACCTTCCGCAAAACCTGTCTATTCTAAgacaagaaatttaaaaag
gaaggaaaaactatttttagacTTATCGAGCTTACTATCTTTCTTAGAGG
TTTTTGTGGTTGTTTCTGAACATTTTTTGGTCGATACGTCACTCTTTGAT
GACTTTGATGactttgatgatgatgatttttcatCATTCTGAACAGGTTT
TTTGTTCGTATCTTTTGAAAGATCATCCAATGTACGTTTTCTACTGAAAA
AAACACGATAATAATAGCTAAAGTGTTACTTTTTCAAGCCTGAGAAACGA
ATTCTTTCTAATACTCAATTAAAAACCTCCTCGTGGGAAATTTATGCTAT
TGGAAAGATTACAACATAtatgaaagaaaatttatacCTAGGGATACTCA
TTGTAGAAACACTGGAATTTGTGGAGTTTTCGTCAGCAGATGATTTTTTC
TTGGAACTTCCGAAGGGAAACTGGCCTTTAAACACAACATCTTGGATAAG
ACTATTAGAGAGAATTTAAATGACAAGTATGTTACAAATAACCATAAAAC
GTTCCCATCTTTTTGATATTGTATTCAATAAATTTATTCAAGCATACCTC
AAAACCTGTCTCTGCTAAGATAAGAAATTTAACAaggaagaaaaaacttt
ttttaaacttacTATCGGGCTTACTATCTTTCTTAGGTGTTTTGGTGGTT
GTTTCTGgacatttttttaactttggagaTACGTCACTCGTTGATGactt
tgatgatgatgatttttcatCATTCTGAACAGGTTTCTTGTTCGTATCTT
TTGAAAGATCATCCAATGTACGTTTTCTACTgaaaaaacgataaaaacaG
GCCattccaatatctatgcgtgaaactatgagtgcctcctcgtcgctacc
ctcttgcgggggcaataacgacaaattcgattttcaattaacgtatGTTT
CCGGCTGAAATTGCTAGATATATGCCGGAAAACGGGTTATTTAGCATTTT
CTgaagatttcatcattaataGACCATATTGCATTTAGATAaaaacgatg
cattgtgggattgctatgggagtattacaataaaatttcgaGGTTTCTAT
TCTAATACTCCGATAACAATCCCAGAATGCATCGCTTTTTCTAAATGAAA
TAAGGTCTATTCcgtctgattttttgcacaaagatgtgtattagCGATgg
ccaaaacatggccgagtccaactttttaagaaaaactgttttctggccga
aaatgacAGGAATTTGCCGCAAAACGCtgttttggcaaattttt Coding sequence (CDS) from alignment at sc0000452:53197..54990 >TCONS_00023374 ID=TCONS_00023374|Name=TCONS_00023374|organism=Clytia hemisphaerica|type=CDS|length=324bp|location=Sequence derived from alignment at sc0000452:53197..54990 (Clytia hemisphaerica)
TTACAAATAACCATAAAACGTTCCCATCTTTTTGATATTGTATTCAATAA
ATTTATTCAAGCATACCTCAAAACCTGTCTCTGCTAAGATAAGAAATTTA
ACAaggaagaaaaaactttttttaaacttacTATCGGGCTTACTATCTTT
CTTAGGTGTTTTGGTGGTTGTTTCTGgacatttttttaactttggagaTA
CGTCACTCGTTGATGactttgatgatgatgatttttcatCATTCTGAACA
GGTTTCTTGTTCGTATCTTTTGAAAGATCATCCAATGTACGTTTTCTACT
gaaaaaacgataaaaacaGGCCat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023374-exon-sc0000452-1491911889:53197..54990 | TCONS_00023374-exon-sc0000452-1491911889:53197..54990 | Clytia hemisphaerica | exon |
| TCONS_00023374-exon-sc0000452-1510915933:53197..54990 | TCONS_00023374-exon-sc0000452-1510915933:53197..54990 | Clytia hemisphaerica | exon |
| TCONS_00023374-exon-sc0000452-1575043694:53197..54990 | TCONS_00023374-exon-sc0000452-1575043694:53197..54990 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000452 | supercontig | sc0000452:53197..54990 . |
Blast
The following BLAST results are available for this feature:
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