TCONS_00023431 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023431
Unique NameTCONS_00023431
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length262

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023431 ID=TCONS_00023431|Name=TCONS_00023431|organism=Clytia hemisphaerica|type=transcript|length=262bp
CACCACTGTATCTTCCTTGTTTGGGTTTATCACGATCACGGTCCTTTCTA
TGTAAGGTGTAGCCTTCGATTTCTAGTTCTCCAGCTTTGTGGTTGGGTGA
TACCCAAGTTTCTGTTAATCcaataaaaatatgattttcagTTGTCAAGA
TATCTCGGATATAGGGAACACAAGATGGTGCGGTTTGTGGACATAAACCT
TGTATGTTCAAGAAAGCAAAGGTTGTTAGTGCAGGGTTCTTGTTGATTGG
TGGTTTGGAAGA
Run BLAST on NCBI

transcript from alignment at sc0000453:142546..142807

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023431 ID=TCONS_00023431|Name=TCONS_00023431|organism=Clytia hemisphaerica|type=transcript|length=262bp|location=Sequence derived from alignment at sc0000453:142546..142807 (Clytia hemisphaerica)
TCTTCCAAACCACCAATCAACAAGAACCCTGCACTAACAACCTTTGCTTT
CTTGAACATACAAGGTTTATGTCCACAAACCGCACCATCTTGTGTTCCCT
ATATCCGAGATATCTTGACAActgaaaatcatatttttattgGATTAACA
GAAACTTGGGTATCACCCAACCACAAAGCTGGAGAACTAGAAATCGAAGG
CTACACCTTACATAGAAAGGACCGTGATCGTGATAAACCCAAACAAGGAA
GATACAGTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013182XLOC_013182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023431-exon-sc0000453-1491911889:142546..142807TCONS_00023431-exon-sc0000453-1491911889:142546..142807Clytia hemisphaericaexon
TCONS_00023431-exon-sc0000453-1510915933:142546..142807TCONS_00023431-exon-sc0000453-1510915933:142546..142807Clytia hemisphaericaexon
TCONS_00023431-exon-sc0000453-1575043694:142546..142807TCONS_00023431-exon-sc0000453-1575043694:142546..142807Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000453supercontigsc0000453:142546..142807 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.56991	2.61639	4.19073	6.93211	2.94754	2.73696	0.847887	3.09748	4.12953	0	1.99099	2.50961	3.74448	3.59324	2.19416	2.20094	2.48472	4.04345	10.5841	11.5179	7.20834	3.28949	0	5.55103	0	3.29641	13.1285	11.395	3.02034	0.720329
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023431 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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