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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023448 ID=TCONS_00023448|Name=TCONS_00023448|organism=Clytia hemisphaerica|type=transcript|length=1459bpRun BLAST on NCBI protein sequence of TCONS_00023448-protein >TCONS_00023448-protein ID=TCONS_00023448-protein|Name=TCONS_00023448-protein|organism=Clytia hemisphaerica|type=polypeptide|length=304bp KNMSSANSEQEGEEKRPQFGTRYLEDESKVFEHNAWDDIEWDEEMENEAKRun BLAST on NCBI transcript from alignment at sc0000454:202543..220665+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023448 ID=TCONS_00023448|Name=TCONS_00023448|organism=Clytia hemisphaerica|type=transcript|length=18123bp|location=Sequence derived from alignment at sc0000454:202543..220665+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000454:202543..220665+ >TCONS_00023448 ID=TCONS_00023448|Name=TCONS_00023448|organism=Clytia hemisphaerica|type=CDS|length=9150bp|location=Sequence derived from alignment at sc0000454:202543..220665+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023448 vs. Swiss-Prot (Human)
Match: MET2A (Methyltransferase-like protein 2A OS=Homo sapiens GN=METTL2A PE=1 SV=5) HSP 1 Score: 281.182 bits (718), Expect = 2.862e-89 Identity = 128/191 (67.02%), Postives = 151/191 (79.06%), Query Frame = 2
Query: 338 RIFEVGCGVGNTVFPILQRSNEKNIFVYCCDFADSAISIVKQHELYDSERCHGFVCDVADENAEFPIAEESLDTIVLIFVLSAIHPDRMLSTMQRLVKLLKPGGMFLFRDYGLYDLAQLRFKPGRCLSENFYVRGDGTRVYFFTQDELNEMFTKCGLVKEQNIADRRLQVNRGRQLKMYRVWIQCKYRKPL 910
RI EVGCGVGNTVFPILQ +N+ +FVYCCDF+ +AI +V+ + YD RC FV D+ DE +P+ + SLD I+LIFVLSAI PD+M + RL +LLKPGGM L RDYG YD+AQLRFK G+CLS NFYVRGDGTRVYFFTQ+EL+ +FT GL K QN+ DRRLQVNRG+QL MYRVWIQCKY KPL
Sbjct: 183 RILEVGCGVGNTVFPILQTNNDPGLFVYCCDFSSTAIELVQTNSEYDPSRCFAFVHDLCDEEKSYPVPKGSLDIIILIFVLSAIVPDKMQKAINRLSRLLKPGGMMLLRDYGRYDMAQLRFKKGQCLSGNFYVRGDGTRVYFFTQEELDTLFTTAGLEKVQNLVDRRLQVNRGKQLTMYRVWIQCKYCKPL 373 HSP 2 Score: 114.39 bits (285), Expect = 6.502e-28 Identity = 53/102 (51.96%), Postives = 70/102 (68.63%), Query Frame = 2
Query: 41 EKRPQFGTRYLEDESKVFEHNAWDDIEWDEEMENEAKEKISKNSSQLVNKEMQDKYEEEAGKFWDTFYNQHQNKFFKDRHWLFTEFEELAQTGTEENKKRIF 346
+KR QFG+R+L D ++VF HNAWD++EW EE A+ K+ +NS Q V +E Q YE A K+W+ FY H+N FFKDRHWLFTEF ELA + + + K F
Sbjct: 15 DKRQQFGSRFLRDPARVFHHNAWDNVEWSEEQAAAAERKVQENSIQRVCQEKQVDYEINAHKYWNDFYKIHENGFFKDRHWLFTEFPELAPSQNQNHLKDWF 116 The following BLAST results are available for this feature:
BLAST of TCONS_00023448 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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