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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023449 ID=TCONS_00023449|Name=TCONS_00023449|organism=Clytia hemisphaerica|type=transcript|length=3168bpRun BLAST on NCBI protein sequence of TCONS_00023449-protein >TCONS_00023449-protein ID=TCONS_00023449-protein|Name=TCONS_00023449-protein|organism=Clytia hemisphaerica|type=polypeptide|length=643bp MEEDDETRDKLLTSVVHMMESNGTAHPHPHPHQDSKTNPAFHFTNGDMTMRun BLAST on NCBI transcript from alignment at sc0000454:222813..245264+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023449 ID=TCONS_00023449|Name=TCONS_00023449|organism=Clytia hemisphaerica|type=transcript|length=22452bp|location=Sequence derived from alignment at sc0000454:222813..245264+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000454:222813..245264+ >TCONS_00023449 ID=TCONS_00023449|Name=TCONS_00023449|organism=Clytia hemisphaerica|type=CDS|length=21252bp|location=Sequence derived from alignment at sc0000454:222813..245264+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00023449 vs. Swiss-Prot (Human)
Match: BLML (Putative beta-lactamase-like 1 OS=Homo sapiens GN=LACTBL1 PE=2 SV=2) HSP 1 Score: 123.635 bits (309), Expect = 2.020e-29 Identity = 88/286 (30.77%), Postives = 134/286 (46.85%), Query Frame = 2
Query: 719 GKEIWSDKQNA--NFSSKFPIASLTKIFPVLMLHMLIADGTIKSIDDDVTKYEPLFDYKNPFN-----RKRITFRHLACMMSGLPREAPCLNFTMTNFCPISDEEMYKRVRNITLSTHPGHIPAYSNLAFGILGSVLERLKNTTSSQ-WIMDNIINPLNMTETGFDILE--RRREFPESIVDGKLVDIVNWGWLTPTGGLYSSSNDLAKLGLLFTGNKTLPGLSKETIQRMLTPEYIWADGEAQGCP--FEINKVDT--ELKKKIDYLVYSKDGSIFGYGAKFSIV 1534
GK+ SD + N + + I+S++KIFPVLML+ L +G + S+DD + +Y F NP ++ + R +A +SGLPR + S +E +++ L PG YS LAF +L VL Q W+ +N++ PL M +TGFD+ R R G+ + + GW P+G +YS++ DLAKL + G L + + +L P CP + N+ T E + Y V KDG + GY A FS+V
Sbjct: 58 GKKNGSDPASGAPNEYTMYRISSISKIFPVLMLYRLWEEGIVASLDDPLERYASTFTINNPLGLASAEQQGLILRRMASQLSGLPRRLRSTSLLWKG----STQEALNLLKDDVLVVDPGTRCHYSTLAFSLLAHVLAAHTAQGDYQRWVSENVLEPLGMADTGFDLTPDVRARLAAGFYGSGRPAPLYDLGWYRPSGQMYSTAADLAKLAVALLGGGPRRLLRPDAAKTLLAPLL--------ACPGAYFANETGTPWEFHAQRGYRVVRKDGDLDGYAATFSLV 331 The following BLAST results are available for this feature:
BLAST of TCONS_00023449 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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