TCONS_00023478 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023478
Unique NameTCONS_00023478
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length726

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023478 ID=TCONS_00023478|Name=TCONS_00023478|organism=Clytia hemisphaerica|type=transcript|length=726bp
ATTTGATCAAATTCCACAAGCTGATCGCGGATACGATTTCGACCTAGTAA
AGAAAGAACAAGGAATTAATTTCCAATGCTCCATTTGTCATTTAATCTTG
CGTGATCCTTACACGACACCGTGTCATCACGCTTTCTGTCACGTTTGTAT
CACGCAATGGGGAAATGAATTAACAAATGCCAAAAGGCCAACAACATGTC
CAAATTGTAACAATGTTTATGACCAAAAGCAAattcaccAAGATGGATTC
ATAGATCGAATGGTGAAAACCAGTTTAGATGTGAAATGTAAACTACACGA
AGTTGGATGTTCATGGCAAGGGAAAATCATTGACTATCAGGATCATCAAA
GGACTTGTGAATATGAGACAATACCGTGTGAAAACGAAGGTTGTTTGGAA
ATGCAGATGAGAAAAAATTTACCGAAACATCAACAGATTTGTGAATATCG
CCTTACACAGTGTGGATACTGCGAACTGAAAAACCCAATCATCCAGATGA
AGTACCACCACAAAGAATGCCCAATGATGAAAGTGATCTGTTTGAACGAA
GAATGCAATGTTCAAGTCCTTCGCAAAGATATCGAAGGTCATTTGTCTCG
AGATTGCCTTTATGAAGTGGTTGGATGCGACTACTTCGACCTCGGTTGTC
TAAAAAAAGTAAGACAACACTGAAATGTCTGCTAACAGCGTTGGCAAATA
AAGACTAATGAAGGAAGGTGGATTAT
Run BLAST on NCBI

transcript from alignment at sc0000454:178615..181377-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023478 ID=TCONS_00023478|Name=TCONS_00023478|organism=Clytia hemisphaerica|type=transcript|length=2763bp|location=Sequence derived from alignment at sc0000454:178615..181377- (Clytia hemisphaerica)
ATTTGATCAAATTCCACAAGCTGATCGCGGATACGATTTCGACCTAGTAA
AGAAAGAACAAGGAATTAATTTCCAATGCTCCATTTGTCATTTAATCTTG
CGTGATCCTTACACGACACCGTGTCATCACGCTTTCTGTCACGTTTGTAT
CACGCAATGGGGAAATGAATTAACAAATGCCAAAAGGTAAAAAGTTAAAT
CTTTTATATTAATTTTTTTTCTAACGCTCTTATGTCCATTCTGATGTAAT
TTACGCGAACAGTGTAGGAGCTTTTCGGGTAAAATAGATATATTCTAAAA
TATTTTTATAGTTTTTGGTAAAATAGAAACAGTACATGCTTTTTCAAAAT
GTGTATTTCGACATGGTGATAGAGAATGTAGGAAGAAAATCCGAAGAAAT
GATTACGATAGTATTAATATGATAACTTGATTTATCTTCTTAGGCCAACA
ACATGTCCAAATTGTAACAATGTTTATGACCAAAAGCAAGTGAGTAATAG
TCTCAATATTCTTGCCATCGAAGCATTTTGTTAGGGGGGGCGTACGGTTT
TTCGGTATTGCGGAAATCGACCCTTTTTTCTTCGGAAATTCGGAAATCAG
GCAAAATTCCTTCGGTATTTCGGAGTTTTGAAATTGTTTCGGTATCGGAA
ATCCATGAATTTTAGCTTCGAAATTTCGGTATTGTAAAGTTTTTATCCCT
TTTTTTCGGAATTTTGGGAAATTTGATGAAAAATTAGTCAAAAAGAGGAA
AAATACCCAAAAAATTGGTATCGGAATTGCAAGTATTTTTTTACGGAATT
TCGGAAATTTTGGCAAAATTATTCGGTATTACGGAAATCGCGAACCCCGT
ACGCCCCCCCCTTTTGTTCTTGTGTAGTTTGTTCTTATAAAACACGCGAA
GCAGTCATAAAAATTATTTATGGAATTGGATGAAAGATAAATTGAAAATT
ATTTTATAGATTCACCAAGATGGATTCATAGATCGAATGGTGAAAACCAG
TTTAGATGTGAAATGTAAACTACACGAAGTTGGATGTTCATGGCAAGGGA
AAATCATTGACTATCAGGTCTGCGTTCTTTGACCGGGGGGGGGGGCACTC
AAGGTAATCGACCGACCGTACGTGCAGCCCTTAAGAGTCCTTTTTCCAAT
AGCGTTGTGGGTCAACCAAAACCGGGAGGCAATTTTTTATTCGTTGTTAG
GATTTTGACGCCTACTTTAAAAATAAAATATATTTGTAAAAATTACGCGA
GCAGAGCGAGGACGAAAATCTTTTGGTATATTTTCTATTTTGGCTGTAAA
CTGTTAATTCTAAGGTGTAAAAAAGAAAAGGGGCGCCGAAATTAGTAGTG
TCAAAGGCGCTTTTTTGCATCTCTTGTCTTCGGGCCCCCCCCCCCCCCCC
CCCCAAAAAAGATCGGCCACCATGCTACTGTTTGTTAAATAAAAAGCAAT
TTATATTTAAGGGAGCTCGTAAACATGAATGGAAAGAGGAAGTAACAATG
AAGGAAAATTTGTTCCAGCCGGTATATAATAATTTTTGCTATTTTCTTTA
GGATCATCAAAGGACTTGTGAATATGAGACAATACCGTGTGAAAACGAAG
GTTGTTTGGAAATGCAGATGAGAAAAAATTTACCGAAACATCAACAGATT
TGTGAATATCGCCTTACACAGTGTGGATACTGCGAACTGAAAAACCCAAT
CATCCAGATGAAGGTTCGCAAAACAGGCTTTATTTCGGACGGTTGAAGTA
GAGAATTTGTGAGCTGAGCAAGTCGAAATGTGAGAAAGTGCACTCTAAGG
GTGGGAAAAGTGAGAAAAACGAAGATTTCTGGGAAAAAAAATTGGAAAAT
CTGACTATTTTTGCCTTAAAACGGACAAAGATTTTCAAAAAAATGGTCGG
TTTTTCACTCACATTTACTCAAATTTGGCTAAATATTTTCTGCACTGTAA
GCGTCCGATTTTAATTTCGGGAGATTGAACAAAGACTTTGTACGATATCA
ATTTGTTATAAATTCAAACTCTGTGAGATGAAGAATGTAATGTAATTGAA
TTTTATTTCATCAAAATATATGTTATTACACCCGTCTCATAGCCTGGGAG
GAACTTCCTTCCCCAGTGGCTGTGGAAATTTTTATCAAAATCCCTATGGG
AATAGAAATTTTATTACTCCAAGGTCAAAAAGTCCAGTGTGGATGGTTTT
GGAGCACAATTCTTTTCCATTGAATATCAAATAGGAATAAAAACGTCAAT
TTCCCAATGTGGCTTAAATTGTGGACTATTTTTCCAACCGAGAGCAAAAT
CTTTGCCATACTTTCCAGTAGAAGTCCCAACGGGTCTGTGACACACAGGG
GTGTGATGCTTTTCGAACACACTGTGTATTAGCCTTCAGACAATTGACTA
ATGATTTTTGAAACGAAATTTTCAGTACCACCACAAAGAATGCCCAATGA
TGAAAGTGATCTGTTTGAACGAAGAATGCAATGTTCAAGTCCTTCGCAAA
GATGTAAGTGTTGTTCATTGTGTCATGTTAAATTCGAATTTTGTCACCAT
AATAATAATTCGTTCATTTATTCATGTATTCTTTCATTCATTCATTCAAA
CTGAAATTTCCATTTAGATCGAAGGTCATTTGTCTCGAGATTGCCTTTAT
GAAGTGGTTGGATGCGACTACTTCGACCTCGGTTGTCTAAAAAAAGTAAG
ACAACACTGAAATGTCTGCTAACAGCGTTGGCAAATAAAGACTAATGAAG
GAAGGTGGATTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013196XLOC_013196Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023478-exon-sc0000454-1575043694:181192..181377TCONS_00023478-exon-sc0000454-1575043694:181192..181377Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1575043694:180889..180934TCONS_00023478-exon-sc0000454-1575043694:180889..180934Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1575043694:180311..180418TCONS_00023478-exon-sc0000454-1575043694:180311..180418Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1575043694:179665..179826TCONS_00023478-exon-sc0000454-1575043694:179665..179826Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1575043694:178875..178952TCONS_00023478-exon-sc0000454-1575043694:178875..178952Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1575043694:178615..178760TCONS_00023478-exon-sc0000454-1575043694:178615..178760Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:181192..181377TCONS_00023478-exon-sc0000454-1510915933:181192..181377Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:180889..180934TCONS_00023478-exon-sc0000454-1510915933:180889..180934Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:180311..180418TCONS_00023478-exon-sc0000454-1510915933:180311..180418Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:179665..179826TCONS_00023478-exon-sc0000454-1510915933:179665..179826Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:178875..178952TCONS_00023478-exon-sc0000454-1510915933:178875..178952Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1510915933:178615..178760TCONS_00023478-exon-sc0000454-1510915933:178615..178760Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:181192..181377TCONS_00023478-exon-sc0000454-1491911889:181192..181377Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:180889..180934TCONS_00023478-exon-sc0000454-1491911889:180889..180934Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:180311..180418TCONS_00023478-exon-sc0000454-1491911889:180311..180418Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:179665..179826TCONS_00023478-exon-sc0000454-1491911889:179665..179826Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:178875..178952TCONS_00023478-exon-sc0000454-1491911889:178875..178952Clytia hemisphaericaexon
TCONS_00023478-exon-sc0000454-1491911889:178615..178760TCONS_00023478-exon-sc0000454-1491911889:178615..178760Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000454supercontigsc0000454:178615..181377 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.092541	0	0.352899	0.103846	0.181763	0.116656	0.687306	0	2.15104	3.76326	0.814979	1.05739	0.284081	0.073949	1.1569	2.76012	0.574429	0	0.413649	0.560558	1.06851	1.04835	0.18819	0.226679	0	0.0776005
Blast
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BLAST of TCONS_00023478 vs. Swiss-Prot (Human)
Match: RN151 (RING finger protein 151 OS=Homo sapiens GN=RNF151 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.403e-20
Identity = 50/140 (35.71%), Postives = 67/140 (47.86%), Query Frame = 2 
Query:   29 GYDFDLVKKEQGINFQCSICHLILRDPYTTPCHHAFCHVCITQWGNELTNAKRPTTCPNCNN-VYDQKQIHQDGFIDRMVKTSLDVKCKLHEVGCSWQGKIIDYQDHQRTCEYETIPCENEGCLEMQMRKNLPKHQQICE 445
            GYD +L       NF CS+CH +L+ P   PC H FC  CI +W        R  TCP C   V  +K +H +    R     L+VKCK  + GC     +   + HQ +C +E   C NEGC     R  L +H+Q C+
Sbjct:    4 GYDLNLFASPPDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRW------LARQKTCPCCRKEVKRKKVVHMNKL--RKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSCPFELTACPNEGCTSQVPRGTLAEHRQHCQ 135
The following BLAST results are available for this feature:
BLAST of TCONS_00023478 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RN1511.403e-2035.71RING finger protein 151 OS=Homo sapiens GN=RNF151 ... [more]
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