TCONS_00023486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023486
Unique NameTCONS_00023486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length676

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023486 ID=TCONS_00023486|Name=TCONS_00023486|organism=Clytia hemisphaerica|type=transcript|length=676bp
CTTACATGGTCGTCAGCGGTTTGCCTGTTCGAAATGGTTCGCGTCACGCA
GGCGAAATCGCTACAATGTCTCTCGACCTCTTGTCTTCCGTACGAACATT
CAGAGTGAAACATAAACCCGAATTACAGATGCAACTCCGAATCGGATTAC
ACACAGGCCCTTGCGTCGCTGGAGTGGTCGGCCTCAAAATGCCAAGGTAC
TGTTTATTCGGGGATACAGTGAATTATGCGAGTCGTATGGAATCCAGTGG
ATTGGCATTGAGAATACACGTTAGTCCTGAGTGTAAAGAAATCCTGGATT
TGTTGAGTGGCTATGAGCTGGAGGAGCGTGGACCGGTCCCTATGAAGGGT
AAAGGAACAATCGTTACCTTTTTCTTGACTGGCAAAAAAGGATACAGCAA
TGAACTTCCTGATCTTGCCAAAGCTGCCAGTATAGATGCTCACACTTTCA
AATGAGATGCTTTGTTAGTTCGTAACATACCATCGTATGACATTGTAGCC
TCCACAAAAGAATACTGGACAGTATAAAAAAACCAATGGAATGTCGCTgt
ttacgcgcgtcggataatacCATAATACCATGGAATATTGTGTACATATA
TTGATCACTTTTGCTCCATTTCAAAGCTTCATTTTCAAGAGCTGAAGGCT
TTGTAACGATCATTTTTATTTCCGAg
Run BLAST on NCBI

protein sequence of TCONS_00023486-protein

>TCONS_00023486-protein ID=TCONS_00023486-protein|Name=TCONS_00023486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
YMVVSGLPVRNGSRHAGEIATMSLDLLSSVRTFRVKHKPELQMQLRIGLH
TGPCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRIHVSPECKEILDL
LSGYELEERGPVPMKGKGTIVTFFLTGKKGYSNELPDLAKAASIDAHTFK
Run BLAST on NCBI

transcript from alignment at sc0000455:453..2209+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023486 ID=TCONS_00023486|Name=TCONS_00023486|organism=Clytia hemisphaerica|type=transcript|length=1757bp|location=Sequence derived from alignment at sc0000455:453..2209+ (Clytia hemisphaerica)
CTTACATGGTCGTCAGCGGTTTGCCTGTTCGAAATGGTTCGCGTCACGCA
GGCGAAATCGCTACAATGTCTCTCGACCTCTTGTCTTCCGTACGAACATT
CAGAGTGAAACATAAACCCGAATTACAGATGCAACTCCGAATCGGATTAC
ACACAGGTGAGTGTAgagatttttcatgttttgttaagtGACGTGTAACT
TCTGCCATTATGAAAGCAAACATTCGAATCTGTAATGGTTATTCTACGCA
AATTAACGAGGATCGGTAATTCGTTCGAATTATATAACttcgaatagacc
ttttcacaaATTACGTCACTAGCAACGCGTTTTACctcatttttaaaata
ttgctaCGGTAATTGATTCTCAGAgttcataaaaattttattttatttat
aaaataacACAGACTCTGGAAatttaatcaccttggcaatggtttcaaaa
cgaggcactCGTTGCACtcgaaaaaatttataaaaaaggcCTAATCAAGA
GTGCTATTGTACCCtagaatttgaaagaaaaacaaaaagagaaacaAAAT
CACATACCGAAACAACCATTGATTCTTTATTATTCGTTGCAGGCCCTTGC
GTCGCTGGAGTGGTCGGCCTCAAAATGCCAAGGTACTGTTTATTCGGGGA
TACAGTGAATTATGCGAGTCGTATGGAATCCAGTGGATTGGCATTGAGAA
TACACGTTAGTCCTGAGTGTAAAGAAATCCTGGATTTGTTGAGTGGCTAT
GAGCTGGAGGAGCGTGGACCGGTCCCTATGAAGGTTTGTCTCTAGAGTTC
TGGCGGGAGTCCGCTTAGGTTGATTAAAAATGCCGTGCACCGAGAGAAAT
TTTCTTCTAAATTCAATTCCCTTCAAAAGCCGACCTTATCGACCTTATCG
TTAAGGGTTGTCTGTTACAGACCCGATATATCTACgggtaatttcaaaat
tcattgccgtagagggtctgttgtcattatattttctaatttgagatttt
tcaaaccgaccgctgtaTTAGTATAGAGTACGgctgagagaggggagacg
acgagggaagtgttgctatttataaattatactttatcaaaatcgtaagg
accgcgctCGTCTAAAATAACTaagaatgacaacaaagttgcgtgattat
GCTTAAAATTAGGGCACcatatcaggaaaatttagtttttttgacTTTCC
AGCGCACAACAAGactcttgttgtagaattttctgcGGGTTGGCTATTTT
CCTcaaatgtttaattttcaagtgcttTCAGaagtttaccgtgcacgtaa
gaaaattagaTTAGATGCTCGACTATCCGATACGCTCCCTTACTTGATGA
AAATCCGATCCCCCTTGAAAACGGAAATGAAGAGCGTCAACGCTATAAAT
CCATTTTCTCTCACTACAAATTTTACAGGGTAAAGGAACAATCGTTACCT
TTTTCTTGACTGGCAAAAAAGGATACAGCAATGAACTTCCTGATCTTGCC
AAAGCTGCCAGTATAGATGCTCACACTTTCAAATGAGATGCTTTGTTAGT
TCGTAACATACCATCGTATGACATTGTAGCCTCCACAAAAGAATACTGGA
CAGTATAAAAAAACCAATGGAATGTCGCTgtttacgcgcgtcggataata
cCATAATACCATGGAATATTGTGTACATATATTGATCACTTTTGCTCCAT
TTCAAAGCTTCATTTTCAAGAGCTGAAGGCTTTGTAACGATCATTTTTAT
TTCCGAg

Coding sequence (CDS) from alignment at sc0000455:453..2209+

>TCONS_00023486 ID=TCONS_00023486|Name=TCONS_00023486|organism=Clytia hemisphaerica|type=CDS|length=1359bp|location=Sequence derived from alignment at sc0000455:453..2209+ (Clytia hemisphaerica)
TACATGGTCGTCAGCGGTTTGCCTGTTCGAAATGGTTCGCGTCACGCAGG
CGAAATCGCTACAATGTCTCTCGACCTCTTGTCTTCCGTACGAACATTCA
GAGTGAAACATAAACCCGAATTACAGATGCAACTCCGAATCGGATTACAC
ACAGGCCCTTGCGTCGCTGGAGTGGTCGGCCTCAAAATGCCAAGGTACTG
TTTATTCGGGGATACAGTGAATTATGCGAGTCGTATGGAATCCAGTGGAT
TGGCATTGAGAATACACGTTAGTCCTGAGTGTAAAGAAATCCTGGATTTG
TTGAGTGGCTATGAGCTGGAGGAGCGTGGACCGGTCCCTATGAAGGGTAA
AGGAACAATCGTTACCTTTTTCTTGACTGGCAAAAAAGGATACAGCAATG
AACTTCCTGATCTTGCCAAAGCTGCCAGTATAGATGCTCACACTTTCAAA
TGATACATGGTCGTCAGCGGTTTGCCTGTTCGAAATGGTTCGCGTCACGC
AGGCGAAATCGCTACAATGTCTCTCGACCTCTTGTCTTCCGTACGAACAT
TCAGAGTGAAACATAAACCCGAATTACAGATGCAACTCCGAATCGGATTA
CACACAGGCCCTTGCGTCGCTGGAGTGGTCGGCCTCAAAATGCCAAGGTA
CTGTTTATTCGGGGATACAGTGAATTATGCGAGTCGTATGGAATCCAGTG
GATTGGCATTGAGAATACACGTTAGTCCTGAGTGTAAAGAAATCCTGGAT
TTGTTGAGTGGCTATGAGCTGGAGGAGCGTGGACCGGTCCCTATGAAGGG
TAAAGGAACAATCGTTACCTTTTTCTTGACTGGCAAAAAAGGATACAGCA
ATGAACTTCCTGATCTTGCCAAAGCTGCCAGTATAGATGCTCACACTTTC
AAATGATACATGGTCGTCAGCGGTTTGCCTGTTCGAAATGGTTCGCGTCA
CGCAGGCGAAATCGCTACAATGTCTCTCGACCTCTTGTCTTCCGTACGAA
CATTCAGAGTGAAACATAAACCCGAATTACAGATGCAACTCCGAATCGGA
TTACACACAGGCCCTTGCGTCGCTGGAGTGGTCGGCCTCAAAATGCCAAG
GTACTGTTTATTCGGGGATACAGTGAATTATGCGAGTCGTATGGAATCCA
GTGGATTGGCATTGAGAATACACGTTAGTCCTGAGTGTAAAGAAATCCTG
GATTTGTTGAGTGGCTATGAGCTGGAGGAGCGTGGACCGGTCCCTATGAA
GGGTAAAGGAACAATCGTTACCTTTTTCTTGACTGGCAAAAAAGGATACA
GCAATGAACTTCCTGATCTTGCCAAAGCTGCCAGTATAGATGCTCACACT
TTCAAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013203XLOC_013203Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023486-proteinTCONS_00023486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023486-exon-sc0000455-1491911889:453..608TCONS_00023486-exon-sc0000455-1491911889:453..608Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1510915933:453..608TCONS_00023486-exon-sc0000455-1510915933:453..608Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1575043694:453..608TCONS_00023486-exon-sc0000455-1575043694:453..608Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1491911889:1045..1235TCONS_00023486-exon-sc0000455-1491911889:1045..1235Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1510915933:1045..1235TCONS_00023486-exon-sc0000455-1510915933:1045..1235Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1575043694:1045..1235TCONS_00023486-exon-sc0000455-1575043694:1045..1235Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1491911889:1881..2209TCONS_00023486-exon-sc0000455-1491911889:1881..2209Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1510915933:1881..2209TCONS_00023486-exon-sc0000455-1510915933:1881..2209Clytia hemisphaericaexon
TCONS_00023486-exon-sc0000455-1575043694:1881..2209TCONS_00023486-exon-sc0000455-1575043694:1881..2209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000455supercontigsc0000455:453..2209 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.140104	0	0	0	0	0	0.0976707	0.0914382	0.211283	0	0.2596	0.10119	0.471429	0.462329	0.361512	0.116885	1.15801	1.14228	0.890846	1.02103	1.91087	1.14432	0.40172	0.513642	0.830071	0.3751	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001054A/G_cyclase
IPR018297A/G_cyclase_CS
IPR029787Nucleotide_cyclase
Vocabulary: Biological Process
TermDefinition
GO:0009190cyclic nucleotide biosynthetic process
GO:0035556intracellular signal transduction
Vocabulary: Molecular Function
TermDefinition
GO:0016849phosphorus-oxygen lyase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009190 cyclic nucleotide biosynthetic process
biological_process GO:0035556 intracellular signal transduction
molecular_function GO:0016849 phosphorus-oxygen lyase activity
Blast
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BLAST of TCONS_00023486 vs. Swiss-Prot (Human)
Match: ANPRA (Atrial natriuretic peptide receptor 1 OS=Homo sapiens GN=NPR1 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 3.528e-52
Identity = 86/132 (65.15%), Postives = 108/132 (81.82%), Query Frame = 3 
Query:    3 YMVVSGLPVRNGSRHAGEIATMSLDLLSSVRTFRVKHKPELQMQLRIGLHTGPCVAGVVGLKMPRYCLFGDTVNYASRMESSGLALRIHVSPECKEILDLLSGYELEERGPVPMKGKGTIVTFFLTGKKGYS 398
            YMVVSGLPVRNG  HA E+A M+L LL +VR+FR++H+P+ Q++LRIG+HTGP  AGVVGLKMPRYCLFGDTVN ASRMES+G AL+IH+S E K +L+   G+ELE RG V MKGKG + T++L G++G S
Sbjct:  927 YMVVSGLPVRNGRLHACEVARMALALLDAVRSFRIRHRPQEQLRLRIGIHTGPVCAGVVGLKMPRYCLFGDTVNTASRMESNGEALKIHLSSETKAVLEEFGGFELELRGDVEMKGKGKVRTYWLLGERGSS 1058
The following BLAST results are available for this feature:
BLAST of TCONS_00023486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANPRA3.528e-5265.15Atrial natriuretic peptide receptor 1 OS=Homo sapi... [more]
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