TCONS_00023503 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00023503
Unique Name	TCONS_00023503
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1137

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000455:165222..170328+

transcript sequence

>TCONS_00023503 ID=TCONS_00023503|Name=TCONS_00023503|organism=Clytia hemisphaerica|type=transcript|length=1137bp
agatAAAATATCATGATTAAAATTGAAGCACGCATCCTTCATCGCTCAGT
ATTCATCCCTGAAGAGAAAATTTTCTGTGAAATTGTGTTTACAAACACAG
CCAAAAAGGATCATGTCAGTGCAGCGAAACAACTGTCACATCAACGTCAT
TCTTCAGATACCAGAGTTCTTGCTCCTGAACGCTGGAGCAAAAATATGAT
AATGGACGCTAAAGTCAGTAGTGATCAATCAGTGACTGTTGCATATGCCA
GTGCACAATTATATTGTCAGTGCAATCTGAATGAAAGAAAGTATCGCATG
CCATTAAATgcaattgaaagcaaaaatgaTAGGTCTGCAAGGCATACAAG
CTTCTCACCTGATCAAGGTGAAAGAGGACATTGCTTACTTAAAACGGAGG
CAAATATTCTTTTCTGTGATCTGACTTTGAAGCCTGGTGAATCCAAGAAA
TTTGAATATAAAGAAGTTTTGCCAGCAAACATTCCACCATCCTATCGTGG
CCAAGACATTAAAATGAATTACAAAGTATGCATTGGAGTTGGACGTATTG
GGAAACCGCTCACTTTGATAAGACTTCCATTTCGTGTGATTGAATTGAAA
GgaattttcaaAGCTCTCAAACAAAAAGCAAAGGAACAAGAGCCTGTCAG
AGACACAGAGACAGAAGTAACAGACAATTTAATAACTGGCCAGAATCCAT
TCTTGCAAGAAAGTGAAAGTCAAAAATATTCTAAACTTGACGTGGCTATG
GATGCTCTCACAGCTTTCACGGTGAAAAGAAATCTAAATACATACAACAT
TCACAGTGTAAATGGTGCTGTAGGAAGGTTTTGTTTATCAAAACACTATT
ATCGTTTGGGTGAAGACATACTGGGaacatttgattttcaaaattctccC
ATACCATGTGTTAAGTATGTTGTATCGCTCCAATGTGAAGAAAAGATGTC
CAAGAACTGTATGATCATACCTTCAGCATCAGAACCAGTACATTATAACA
CGCTAAGTCGACATGAGGAATGCTGTTATTCTGCTAGCAAGAGTAACTTC
CTAATACCAATACCTATCACAGCTACGGAGGAGTTCACACATAAATTAGT
CTCTGTGCACTGGAGATTGCATTTCGAATTCACCATC

Run BLAST on NCBI

transcript from alignment at sc0000455:165222..170328+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00023503 ID=TCONS_00023503|Name=TCONS_00023503|organism=Clytia hemisphaerica|type=transcript|length=5107bp|location=Sequence derived from alignment at sc0000455:165222..170328+ (Clytia hemisphaerica)
agatAAAATATCATGATTAAAATTGAAGCACGCATCCTTCATCGCTCAGT
ATTCATCCCTGAAGAGAAAATTTTCTGTGAAATTGTGTTTACAAACACAG
CCAAAAAGGATCATGTCAGTGCAGCGAAACAACTGTCACATCAACGTCAT
TCTTCAGATACCAGAGTTCTTGCTCCTGAACGCTGGAGCAAAAATATGAT
AATGGACGCTAAAGTCAGTAGTGATCAATCAGTGACTGTTGCATATGCCA
GTGCACAATTATATTGTCAGTGCAATCTGAATGAAAGAAAGTATCGCATG
CCATTAAATgcaattgaaagcaaaaatgaTAGGTCTGCAAGGCATACAAG
CTTCTCACCTGATCAAGGTaaagcttttttgtttttattatgttATTACC
ATACATACAGTATGTCTAGGTataattaagaaaatttaagctTCAGATTC
TCCTTTTATATCTTGGAATATCGTTAGTGTTGTATATATTATCTTGAAAA
CCTAATTGAgatctttttttcttctaatcAGGTGAAAGAGGACATTGCTT
ACTTAAAACGGAGGCAAATATTCTTTTCTGTGATCTGACTTTGAAGCCTG
GTGAATCCAAGAAATGTAAGTACATCCAGTTAATAAAAGGGCTTatcatt
tttagtatttttttctttttagcatgTCCAANTTCTCCTTTTATATCTTG
GAATATCGTTAGTGTTGTATATATTATCTTGAAAACCTAATTGAgatctt
tttttcttctaatcAGGTGAAAGAGGACATTGCTTACTTAAAACGGAGGC
AAATATTCTTTTCTGTGATCTGACTTTGAAGCCTGGTGAATCCAAGAAAT
GTAAGTACATCCAGTTAATAAAAGGGCTTatcatttttagtatttttttc
tttttagcttgTCCAAGTACACAATAGTTTATCATAAGTAGTAAGTTGTG
CAGTCACAAACGAGGGAGACccaaatatttttccttttaaattGGACTGT
TTGCCAGAAAGAAGATTAGGGTTGCAAGGCATCTTACCCATGATGCTTCT
CTGTTTTTTCTAAGAGACATCTCAAGAAAACACAAAAGCTTGTTGACTGT
AGCCAAACAGAGCCAAATGCTTTACTTTTTGGCTGCAGTAAACTAGCCAA
TATCTTGTTTGAATTGAAGTAATAAAATATTTATATCTTACAAAGAATTA
CTAGTCGACTAGTCAATGGTTCTGAATGATCTTAAATGATTCAAAATTAA
TACTATGAATAagtttataatttatttttaatttgcaTTCCTGCAGTTGA
ATATAAAGAAGTTTTGCCAGCAAACATTCCACCATCCTATCGTGGCCAAG
ACATTAAAATGAATTACAAAGTATGCATTGGAGTTGGACGTATTGGGAAA
CCGCTCACTTTGATAAGACTTCCATTTCGTGTGATTGAATTGAAAGGTAT
TAGAAAAATTACCATTCTTTTTCTACGTAGCCTTGGGGGAGTTCACCCAA
ATATGGCTTCCAAAGTCTATTAGATTCAACCATGTTTTTATAATACCTTC
AAATCATAACACGGCGATCTTTGattggattaatcggattcaaatttcct
tgttttagccaaattttaggaaattaactgagaagaaatgatttcttttt
cttttatccattAGAGAACCAATATAagtacattctgtgaaaatttcaaa
tctctAGTACTTTTCTATCtggaattatcttgattccgatttagagggat
ttcaaccgggatgaggacgggatagagggatctctcgaaaacgaaagtgc
ccaataactggtgaacagattgatgtatcaaaatactttttttcctactt
ttacattgctataatataaggagactttatatataccaaatttcatctcc
ttatgAGAACGACTTCAGGAGATACAagggatattagccaaaataatccc
gattttacaaaagttccaatgaaaaaTCACTGTGTAAATTGTAATTCAAC
AATGTTGATCGATGGATTCACTTATTTCAAATAATGGACAATGTATAGTA
ATTGGGTCACTTTATCTACGTTGTAGCCAATATTTACTGATAAAGCATAa
gtcaaaatttcattaaatgtaaagtgTATTTTCAATCTGTTTGTGCTTAA
ATAGTGATAAGGTCTTTAGAATTTTATGTTTGATTGACTTTATACTGATC
CACACCCTCTTTCTCCTTTTAGGAATTCTGTCCTTTCCTTATCTTAAGAG
TTTTCAAGTGGATGGTTGATTGACTTTATACTGATCCACACCTGCGCCTC
CTTTTAGGAATCCTGTCCTCTCcttatttttaggaattttcaaAGCTCTC
AAACAAAAAGCAAAGGAACAAGAGCCTGTCAGAGACACAGAGACAGAAGT
AACAGACAATTTAATAACTGGCCAGAATCCATTCTTGCAAGAAAGTGAAA
GTCAAAAATATTCTAAACTTGACGTGGCTATGGATGCTCTCACAGCTTTC
ACGGTGAAAAGAAATCTAAgtaagaaaatatcaaaaatgtaCGTTTATTT
CTCATAAAAGTCACAATCTGTAACAAATTTTCAGCTCGATAaaacggtaa
acctctgaaggcacttgaaaattgaCCATCTGAAAAAAATAGCCCGCAGT
AAaatctacaacaagaatcttgttgtgcaccTGAATGTCGAAAACTGATA
TGGCTCCCTATTTTCAAACACAATCACGAAACTTttttgtcattcccagt
ccttttagacgagtgcggtccttacgattttgagacagcatattcgtcag
attgttatgttttcacccatccctttagagcctcagcgtggtgggcagaa
aacgaTCGCAATCTGATCTCAGTTAAGTTGTTGAGATACAAGGGATAAAT
TGATTtgtatattatttattttatcaaatttctttttggttTCTTTCAGA
TACATACAACATTCACAGTGTAAATGGTGCTGTAGGAAGGTTTTGTTTAT
CAAAACACTATTATCGTTTGGGTGAAGACATACTGGGaacatttgatttt
caaaattctccCATACCATGTGTTAAGGTTTGTCAAAGTGTTATTTTAAA
GTCAAAGTATTATTTTTCGtctaaaaatgatttgattttttttatacaga
gtttcaatattttaaagttGTTCTAGTCTCCTAAAAGTTTGCCTTTTCAA
ACGACTACTGAAAAGTATTCACAAGTCTGGCTGTAGGATTAATAtattaa
tcgcacgatgagttattttttcttctttagcgcgccttcaaagagagcaa
ttaatcgttaattgcatcctgtagagagcaattaatcgttaatcacactc
ttcaatgaggCGCCAATATTTACAAAATNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaaactctcagtgtaa
tttctgtaatttattttcctaactgggaaaaagtagtgaaagccattgtg
cgattagctcgtaatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNattttcctcgtcctttc
ggactcggaaaattaataacaaaaaaatcactcgtgcaattatattcgaa
tttcactcgttatcatgtgattacatatactaattgtAAGATTGTTGTAA
GATAACTGTAGATTAATAATTTcgttaatttttcaaagttgcCAGTTTCA
ATGATGAATATTCTTGTTAAACTTATTATTTTATTCAATGAGCAGTATGT
TGTATCGCTCCAATGTGAAGAAAAGATGTCCAAGAACTGTATGATCATAC
CTTCAGCATCAGAACCAGTACATTATAACACGCTAAGTCGACATGAGGAA
TGCTGTTATTCTGCTAGCAAGAGTAACTTCCTAATACCAATACCTATCAC
AGCTACGGAGGAGTTCACACATAAATTAGGTATGAAACTGTAATTCTTTG
TTTAAGACTTATGTATCTGCCATAGTGTCCTAGTAGGTTGGTTCCCctcc
cttgaaaattgaaaaaaatctctcTGCCCCCCTTTTAGTTCCCCTCccta
aggtttttaaaataattcCCCCCATTCATGTTATCTCGTCCctatataca
aagaaaaaatgtaaattgtCACCACCTCGAATATAAAACACTATTACAAG
TTTTTAGCTTGAAGTTGAACAGacatattttatgttttatgtttGACACC
AGAgaacagaaaatctttttccCCAGATTTTTTCTCCCCACCCTTGACAG
TTTGGAGCTATTTTTTCTCCCCCTCCTTTTGATTGCCCCCccctaaaatt
ttgaaaacgattTTGCCCACCCTTTTCCCattctctgaaaaaaaaactcc
ccccccccccccccaacccccaaaaaaaaaacccccccccccctttttta
aacggTAATATGGTAATAGAGGAGTTCAAATACTTAAGGCTAGCTGGCCT
TGAAGATACCTTTGGCTTGCCGTTTCAGGCCCTTTTTCCTAGTTGAGTGT
ACTCTAACGGTCAATCGTTGCTTCTACCCTTCTTACCAACCTTATTATAA
AGAAGACAGCCCCAACTTTTTGaactatttttaattttgaaatttaaaga
agaaaaaaacgcTGTGATATGAAATAACTATTACAAAAGGTTCATGAAGT
TTTTCAAGTGAAAACTACTGTCCAATTGTACCTCCTTTTACCAATATTTT
CTCTTACCTTACCTCATAGTCTCTGTGCACTGGAGATTGCATTTCGAATT
CACCATC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_013208	XLOC_013208	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000455	supercontig	sc0000455:165222..170328 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06214	0.295275	0.324456	0.0837079	2.94223	0.0408966	0.0235031	1.49799	0.971806	1.31818	1.50509	0.562989	0.223335	1.00862	0.841425	0.717643	0.832289	1.01008	0	0.671641	0.551789	0.00489746	0.861819	0	0.0363702	1.54243	0.652045	0.333216	1.26475	0.401081

Blast

[Close]

BLAST of TCONS_00023503 vs. Swiss-Prot (Human)
Match: RGP1 (RAB6A-GEF complex partner protein 2 OS=Homo sapiens GN=RGP1 PE=1 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 5.965e-69
Identity = 129/381 (33.86%), Postives = 193/381 (50.66%), Query Frame = 1

Query:   13 MIKIEARILHRSVFIPEEKIFCEIVFTNTAKKDHVSAAKQLSHQRHSSDTRVLAPERWSKNMIMDAKVSSDQSVTVAYASAQLYCQCNLNERKYRMPLNAIESKNDRSARHTSFSPDQGERGHCLLKTEANILFCDLTLKPGESKKFEYKEVLPANIPPSYRGQDIKMNYKVCIGVGRIGKPLTLIRLPFRVIELKGIFKALKQKAKEQEPVRDTETEVTDNLITGQNPFLQESESQKYSKL--DVAMDALTAFTVKRNLNTYNIHSVNGAVGRFCLSKHYYRLGEDILGTFDFQNSPIPCVKYVVSLQCEEKMS------KNCMIIPSASEPVHYNTLSRHEECCYSASKSNFLIPIPITATEEFTHKLVSVHWRLHFEF 1131
            MI++ A +    VF+  E + C +  TN       SA+ +                                   +A+ASAQ++CQ + +E +  +P       + +    T F P +GERG C+L T   ILFCDL L PGESK + Y EVLP   PPS+RGQ +K  YK+ IG  R+  P+TL+R+P RV+ L G+           + VR  +    D  +   +PFL+E E  K      ++A + L A T  R+L+ YNI    G VG F + K  YRLGED++GT +     + C+++ VSLQ EE++       +    +PS S   H    +RH+E C   ++++F +PIP+++T  F   +VS+ WRLHFEF
Sbjct:    1 MIEVVAELSRGPVFLAGEALECVVTVTNPLPPTATSASSE----------------------------------ALAWASAQIHCQFHASESRVALPPPDSSQPDVQPDSQTVFLPHRGERGQCILSTPPKILFCDLRLDPGESKSYSYSEVLPIEGPPSFRGQSVKYVYKLTIGCQRVNSPITLLRVPLRVLVLTGL-----------QDVRFPQ----DEAVAPSSPFLEEDEGGKKDSWLAELAGERLMAATSCRSLHLYNISDGRGKVGTFGIFKSVYRLGEDVVGTLNLGEGTVACLQFSVSLQTEERVQPEYQRRRGAGGVPSVSHVTH----ARHQESCLHTTRTSFSLPIPLSSTPGFCTAIVSLKWRLHFEF 328

The following BLAST results are available for this feature:

BLAST of TCONS_00023503 vs. Swiss-Prot (Human)

BLAST of TCONS_00023503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RGP1	5.965e-69	33.86	RAB6A-GEF complex partner protein 2 OS=Homo sapien...	[more]

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TCONS_00023503 (transcript) - C. hemisphaerica