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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023553 ID=TCONS_00023553|Name=TCONS_00023553|organism=Clytia hemisphaerica|type=transcript|length=1693bp
CAAACAGTCAAATAGTATTTCTAGTTGAACATATGCCAAATAAACACAAC
ACAAACACAAACAGGATCATACTGACGCAAACAGACACAAGTGAAATCTG
GAGACTTGAtgagaaaaaaacacaaaaactcccgccatttttttttgttt
acgcgcatttttttagtcaaaggcGACATCGAAAAAACGCCCTCTTTATC
ACCCCCGCATTACGTAATAAAATGATGTCATCTTTATCACATGACTAATT
ACCAGTCCTTattatgaaattttgtaaacaaacttgCTTCGCTCTGCGAA
ATTCTTTCGTTTTGGGTTGACAAATAAAAGTTGACTCTACTGTCATAATC
TTCTATTAATCGAATCGCACAACTTGCTGAAGAACAAGTGATCATAAAAA
TTCAAAGATGTCTCTCTACCCATCATTGGAAGATATGTCTGTTGCCAAAC
ATgtgGAGGCACAGGCATATCAAGAAACACAACATCATCAACAAGCAATT
GCATCTGGGTCAATTGCACCTGATACTCCAATGAGCTCTAGTTTGTACCC
ATCATTAAATGACTTCATGGGCCTACAAATTTCTCAGGCTACACTCCAAC
AAAACATGCCATCTACCAGTGGGCAAGTTGTACAGTACCAAGCTCCATCC
CAACAGATGGTTGCTCCAGTCACTGGTAACCAAAACATGGGATTGATGCG
ATCAGAAATAAAACAAGGCATTCGACAAATTATCGCTTGTAAAGATCAAA
AAGGAAAGATGGGAATTCGTGTGCAACACGTTAACAAAGGTGTTTTCGTC
TCATTTGTACAAAAGGGATCACCAGCAGCTATGGCTGGATTAAGATTTGG
AGACCAAATTTTACAGATTAATGGTGAAACTCTTGCCGGGTTCGACCGTG
ATAAGGTTatgaaattgatcaaaaaacAACCAGCTGAAAGAATCGAATTA
GCTGTTAGAGACAGGCCTTTTGAACGAGCTATCACGATGCAAAAAGACAG
TGTAGGTCACGTTggttttatttacaaaaatggTAAAATCAACTCCATCG
TCAAAGACTCTTCAGCAGCTAGAAATGGTTTATTGATCGAGCATAATTTA
TTGGAAGTCAATGGTCAAAATGTTGTGGGACTCAATGATAAGGAAATCTC
AAAGATTTTATCGGAATCAGAAAGAAGTTTAACGATCACAATCATGCCAA
GTTTCATCTACGAGCATATGGTCAAATGTATGTCTGATAGTCTCGTCAAG
AAGTTGATGGATCACTCTGTTCCTGacttgtaaattttgcttaaaaGGCT
GAACACTCTAAAttaattttggggaaaaaataAACTCATTGTTTGGAGAC
AGTAGAAAAGAATTGCTGTTTGTATATAATAAAAgaatcttgtttttatt
aaatggTTATTGTTTATTACgtatttgttttattatttttctatctTTAA
ATTCACTCACCCTCTTTGATTGActgattgttttttatttgattatggAA
TTCTAAGTCATTCTTTTATAAATGACGTAcctttctttagaaaaaaaata
gtacttcaaaaatcattgtatatttattaaaaaaataaagacaTCTTAAC
gcatttaattctttttttttttttttcatttctttaaacCGAGTGAATAA
TTCTATCAGTTTCACTTCATATCCAAACTCCCAAAAAACCTTC Run BLAST on NCBI protein sequence of TCONS_00023553-protein >TCONS_00023553-protein ID=TCONS_00023553-protein|Name=TCONS_00023553-protein|organism=Clytia hemisphaerica|type=polypeptide|length=291bp
MSLYPSLEDMSVAKHVEAQAYQETQHHQQAIASGSIAPDTPMSSSLYPSL
NDFMGLQISQATLQQNMPSTSGQVVQYQAPSQQMVAPVTGNQNMGLMRSE
IKQGIRQIIACKDQKGKMGIRVQHVNKGVFVSFVQKGSPAAMAGLRFGDQ
ILQINGETLAGFDRDKVMKLIKKQPAERIELAVRDRPFERAITMQKDSVG
HVGFIYKNGKINSIVKDSSAARNGLLIEHNLLEVNGQNVVGLNDKEISKI
LSESERSLTITIMPSFIYEHMVKCMSDSLVKKLMDHSVPDL Run BLAST on NCBI transcript from alignment at sc0000456:136333..143373+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023553 ID=TCONS_00023553|Name=TCONS_00023553|organism=Clytia hemisphaerica|type=transcript|length=7041bp|location=Sequence derived from alignment at sc0000456:136333..143373+ (Clytia hemisphaerica)
CAAACAGTCAAATAGTATTTCTAGTTGAACATATGCCAAATAAACACAAC
ACAAACACAAACAGGATCATACTGACGCAAACAGACACAAGTGAAATCTG
GAGACTTGAtgagaaaaaaacacaaaaactcccgccatttttttttgttt
acgcgcatttttttagtcaaaggcGACATCGAAAAAACGCCCTCTTTATC
ACCCCCGCATTACGTAATAAAATGATGTCATCTTTATCACATGACTAATT
ACCAGTCCTTattatgaaattttgtaaacaaacttgCTTCGCTCTGCGAA
ATTCTTTCGTTTTGGGTTGACAAATAAAAGTTGACTCTACTGTCATAATC
TTCTATTAATCGAATCGCACAACTTGCTGAAGAACAAGTGATCATAAAAA
TTCAAAGATGTCTCTCTACCCATCATTGGAAGATATGTCTGTTGCCAAAC
ATGTaagttttactttttcttcTACAGGTCGCTCTGCTGATGGGTGGCAT
CCCTGGCCTGCActttttactttcactttcctCTCATTTTATATATCCCT
TTGGTCCTGTCTGACATTTACAAACAAAACATTCATGCCAAGTATATGTA
AGCTCGGATAAACTTTTGATTGTATAAACCCTCTCCAagaacccttagag
agacttttcccaaaattttggtACAGACGacgatattttccaaaaattgt
gtTGAACAATGTTTAGACATTAGAGGGGGTGTCAGCGGGTATCTGGTTCT
GGCTCTTATTACTCTTTTCTCTTGTACTTTCAACAAAGGAGCCAANgcac
tgtcatcattgacaataaaacaaacaatattctgtcaagagccttgtaaa
cattccaacaacttccatcgaaatgaatctatcacagctcagtctaccat
ttttagcgcggtccgaggattgagccgagaactctcgcagagGACCGCGg
tgatgaaaaacttcaatctgtcagtcattttctcaagcgacacaagtgtt
tcaaccggtattccaacgaagccatattttggtttgtacagaaattttgc
ccgcTCAAATCATCACAACAAAAATATGGTTTTTTAGAGGTtattcgtaa
tacgcgatttgccTTAGGCTTAAAGCTTGtggcgaagagtacgcgaagca
attctagctttacgatagtgctgcggatcatcaatggataatattcaatt
atcattatccctttattttcattcctagaacttttgcaaaaaaaggaaaa
attgaaaagttgtattttttactgttctattcacatactgaatttgaaag
atcttctatgtggcgtttttttgcaaacttcaaaaaactgatttttgtcc
cgccttTGTGGGATTTTGGCTCAAGTGCTTGAGTacagcatagggtacaa
agtccaaatatgcgttttccgtaatttttgtatgaagagttaggtctaca
ctgtctcATTTTATATTTCCCTTTGGTCCTGTCTGACATTTACAAACAAA
ACATTCATGCCAAGTATATGTAAGCTCGGATAAACTTCTGATTGTATAAA
CCCTCTCCAagaacccttagagagacttttcccaaaattttggtACAGAC
gatgatattttccaaaaaatgtgttGAACAATATTTAGACATTAGAGGGG
GTGTCAGCGGGTATCTGGTTCTGGCTCTTACTCTTTTCTCTTGTACTTTC
AACAAAGGAGCCAAATTACACCTTCAAGCCCCTTCTCATTAAGTTTTGAA
GTGACCAATCTTCTATTTATTGGTATTTCTACTACCTATGATATATATAA
CCTAAACTTGCTTGaactttttgacaattttgaacttgaaaaagtcCTGA
ACATGACCCAGTTTTTATGAAGgtgaaaatccaaatttttgtgGCCTGAC
CATCAATGTTAGGACCGAAagaatttttaagcaaaattgcTATTATGGCC
TGAACATGACACAAAAAAGTTAATGGGTATGTTTGGGCAATACCTTGGGT
CTGTATCTCTAAAGAAGCTTGAATGGAAAATAATAGCCTTTtctcaacat
tagaccaacttacagtaaaaAGCAGTTGACCTTTTAATACAATTCTATTT
AGAAAAACTTATTCCACTATTTTATATCTTTGGGTGGTACTAAAATTTGC
ATAAACTAATTTTCATGGATCTCAGTTAAAAAATTGTTcccacaaaaatt
agtttttattaaataattatATATATTAGTTAACCTATAGCATGATGTGT
TAATTACTtaattttgaacttgaaaaagtcCTGAACAAAACCTGAGCTGG
TCTGTGCAGATTTGGGCCAGGCAGATATCCAAAATTTTGTAGCTTCTGTT
CAAATGTTTTGCCATTTTGGCCGGAACATGACCTGAAAAAATTTGGGCCA
TATGAGGGTCGTGCATCAAGGTTAAGCTTTGAGTATATTAATTTAGAAGA
AGGCCTCGATCTATTGAATAACTGATTTCTATAGCATaaattttttaatg
ataatGCCATGATTGACTTGTCTTCTAGAAGACAGCCAGCTGTTACCTAC
CTTAAGGGAgctgatttttgtttttttggcaaaaccgcaaaaattagaaC
CTTCGAATTACAAATATTgctattttccttcaaaaatgtttagaaatcca
tgggaaaatgaaagaaatgggTCTAAAATAgggcaaaaccgcaaaaatta
attcccataaaatgcaattttttcaatttcttttcaacCACAAAACTTAG
TTCCCGCTAAAATCAGTTCCCTTGAAAGGATTGAACCCATTTTTACTACT
TGGAGTTGATAATTTACAGTGTAGTTATTAGTTAGTCAAAAGGCTGTCTC
CTAAAGGACTAATAGCTCTGTAATTGGAGACAATTGGATTCACCTTTCAT
TAAAGTCGCACTATTTTTGTTTGCAGAGTGGACAACACCACTTTTACtca
gaaaattgaaattagatAGATcaacagggctgcaaataaatatttttagt
caatcggacatcatgtccgacagaaatgaaatcctgtcggtcattcagtg
tatatattttttttaagttacagagaaagcgagtaggaaaaataaaagtt
accttcgaacagtttgttactgtatataacagagaaattgattcgttaaa
agtgatcttagaaacacccttggaagttacgaagaaagcgagtcgataaa
agttaacttaaaaacactcttgaaagttatgaagtaagcaaattgatgaa
aatggtcttaaaaaaactcttgaaagttacgaagaaagcgaattgataaa
agtgatcttagaaacactcttgaaagttacgaagNCCTAAAAtagtgaga
aaaaaatttaatgtgaTGTATAAATTGATTGTGTGGATATTTCGTAAAGG
CTTTTCCTGGCTTTTCCAGGCTTTTCCAGAATCTAGAACAAAATTCCTAA
TCTTTTTAATGAATTATTATTCATTTTATATCTAGTTATATTATCCCCTT
TTCATTTTGTAGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGG
CCTACAAATTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTG
GGGTAAGTATCCAGATTCATTCATCTTCAAATCAATTATATTgctaatat
tttggaaaaagaaataaaacataGAAACTTTGATTTGCTTTTCTTAATGA
AGTTTTTAAATTCATTGACATCTGATAGCATATGACTAATGAAGTCTCAA
TGATAGCCTAAACAAGATCAATTTTGGTAACAAATACAAGATGATGGTTC
TATATGAACAGGTGCACTATAGGAAGTCTATTTGGTGGGGTTAATTTTCt
atgatttcaaatttttccttttaaatttgatttttagtaTCGTGTATATG
GGAAAAGACTTAATTTGTTATtaatatttgattaaatttacTTTACCTTC
AGCAAGTTGTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTC
ACTGGTAACCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCAT
TCGACAAATTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTG
TGCAACACGTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCA
CCAGCAGCTATGGCTGGATTAAGNCCGACACAGtcggtcaaatagctttt
tcagtcggacattgaccaatgaccgacgcttatttgcagccctggatcaa
aatctaaattttaaataCAGTAACAtctgatgaattttttttttatttta
ggtgGAGGCACAGGCATATCAAGAAACACAACATCATCAACAAGCAATTG
CATCTGGGTCAATTGCACCTGATACTCCAATGGTAAGCATTACCAACTGA
GATGAGTGCGTAGAAACCAAAAACTCAAACCCTAAAAtagtgagaaaaaa
atttaatgtgaTGTATAAATTGATTGTGTGGATATTTCGTAAAGGCTTTT
CCTGGCTTTTCCAGGCTTTTCCAGAATCTAGAACAAAATTCCTAATCTTT
TTAATGAATTATTATTCATTTTATATCTAGTTATATTATCCCCTTTTCAT
TTTGTAGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTAC
AAATTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGGTA
AGTATTCAGATTCATTCATCTTCACATCAAAATCAATTATATTgctaata
ttttggaaaaagaaataaaacataGAAACTTTGATTTGCTTTTCTTAATG
AAGTTTTTGAATTCATTGACATCTGATAGCATATGACTAATGAAGGCTCA
ATGATAGCCTAAACAAGATCAATTTTGGTAACAAATACAAGATGATGGTT
CTATGTGAACAGGTGCACTATAGGAAGTCTATTTGGTGCAGTTAATTTTC
tatgatttcaaatttttctttttaaatttgatttttagcaTCGTGTATAT
GGGAAAAGAGTTAATTTGTTATtaatatttgattaaatttacTTTACCTT
CAGCAAGTTGTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGT
CACTGGTAACCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCA
TTCGACAAATTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGT
GTGCAACACGTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATC
ACCAGCAGCTATGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTA
ATGGTGAAACTCTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatc
aaaaaacAACCAGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTT
TGAACGAGCTATCACGATGCAAAAAGACAGTGTAGGTCACGTTggtttta
tttacaaaaatggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCT
AGAAATGGTTTATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAA
TGTTGTGGGACTCAATGTAAGATTAATTTCGTTTGGATTTTTTTAAGTTA
AGCGATTCGCTAGGGATGTTATACACATTGGATTGGTTTATGGCAGTGTT
AAAGTAAAAGTATTTTTAGCAATTTATTCTTATCTTATTGAATTTTGTTg
acatttattaaattttagaGTAGTTGTTATAGTTGACTgattgattttat
caaaatatttatttttgtatctttttcaGGATAAGGAAATCTCAAAGATT
TTATCGGAATCAGAAAGAAGTTTAACGATCACAATCATGCCAAGTTTCAT
CTACGAGCATATGGTCAAATGGTAAGAACTagaattttttggatttaaaa
TGTAGGTCGAAGAGGCTCtctatattaaaagtcaaaaaatgacgAGAATT
AATGtgcagatttttttattttacgtaGTATCTTTTCGTAAAGTATGATT
TCTGCGCTATATGAATTTGGAAAGACctacaatctttcaagaaatatatt
gagaattccggttattttgacgtttttcgagatttaaagttcgggcgaaa
aagccgattttgggctatctctttNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNactaagtcttaagtctagcgttaaaactcagagttaaaa
ctctacccttcgaacctactttagagcacttacaaatcgattgtggtttc
aaaacaccccggtggatttcccttttgtctcaaatatttcttgaaggatt
gtagcaagcattgaatgaaaaaaaaactgaaatattgTATTTCTGACTAA
ATTAtcttaatttctttcttttatagTATGTCTGATAGTCTCGTCAAGAA
GTTGATGGATCACTCTGTTCCTGacttgtaaattttgcttaaaaGGCTGA
ACACTCTAAAttaattttggggaaaaaataAACTCATTGTTTGGAGACAG
TAGAAAAGAATTGCTGTTTGTATATAATAAAAgaatcttgtttttattaa
atggTTATTGTTTATTACgtatttgttttattatttttctatctTTAAAT
TCACTCACCCTCTTTGATTGActgattgttttttatttgattatggAATT
CTAAGTCATTCTTTTATAAATGACGTAcctttctttagaaaaaaaatagt
acttcaaaaatcattgtatatttattaaaaaaataaagacaTCTTAACgc
atttaattctttttttttttttttcatttctttaaacCGAGTGAATAATT
CTATCAGTTTCACTTCATATCCAAACTCCCAAAAAACCTTC Coding sequence (CDS) from alignment at sc0000456:136333..143373+ >TCONS_00023553 ID=TCONS_00023553|Name=TCONS_00023553|organism=Clytia hemisphaerica|type=CDS|length=5256bp|location=Sequence derived from alignment at sc0000456:136333..143373+ (Clytia hemisphaerica)
ATGTCTCTCTACCCATCATTGGAAGATATGTCTGTTGCCAAACATgtgGA
GGCACAGGCATATCAAGAAACACAACATCATCAACAAGCAATTGCATCTG
GGTCAATTGCACCTGATACTCCAATGAGCTCTAGTTTGTACCCATCATTA
AATGACTTCATGGGCCTACAAATTTCTCAGGCTACACTCCAACAAAACAT
GCCATCTACCAGTGGGCAAGTTGTACAGTACCAAGCTCCATCCCAACAGA
TGGTTGCTCCAGTCACTGGTAACCAAAACATGGGATTGATGCGATCAGAA
ATAAAACAAGGCATTCGACAAATTATCGCTTGTAAAGATCAAAAAGGAAA
GATGGGAATTCGTGTGCAACACGTTAACAAAGGTGTTTTCGTCTCATTTG
TACAAAAGGGATCACCAGCAGCTATGGCTGGATTAAGATTTGGAGACCAA
ATTTTACAGATTAATGGTGAAACTCTTGCCGGGTTCGACCGTGATAAGGT
TatgaaattgatcaaaaaacAACCAGCTGAAAGAATCGAATTAGCTGTTA
GAGACAGGCCTTTTGAACGAGCTATCACGATGCAAAAAGACAGTGTAGGT
CACGTTggttttatttacaaaaatggTAAAATCAACTCCATCGTCAAAGA
CTCTTCAGCAGCTAGAAATGGTTTATTGATCGAGCATAATTTATTGGAAG
TCAATGGTCAAAATGTTGTGGGACTCAATGATAAGGAAATCTCAAAGATT
TTATCGGAATCAGAAAGAAGTTTAACGATCACAATCATGCCAAGTTTCAT
CTACGAGCATATGGTCAAATGTATGTCTGATAGTCTCGTCAAGAAGTTGA
TGGATCACTCTGTTCCTGacttgtaaATGTCTCTCTACCCATCATTGGAA
GATATGTCTGTTGCCAAACATgtgGAGGCACAGGCATATCAAGAAACACA
ACATCATCAACAAGCAATTGCATCTGGGTCAATTGCACCTGATACTCCAA
TGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAATT
TCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGCAAGTTGT
ACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAACC
AAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAATT
ATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACACGT
TAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGCTA
TGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAAACT
CTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacAACC
AGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAGCTA
TCACGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaaaat
ggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGGTTT
ATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGGGAC
TCAATGATAAGGAAATCTCAAAGATTTTATCGGAATCAGAAAGAAGTTTA
ACGATCACAATCATGCCAAGTTTCATCTACGAGCATATGGTCAAATGTAT
GTCTGATAGTCTCGTCAAGAAGTTGATGGATCACTCTGTTCCTGacttgt
aaATGTCTCTCTACCCATCATTGGAAGATATGTCTGTTGCCAAACATgtg
GAGGCACAGGCATATCAAGAAACACAACATCATCAACAAGCAATTGCATC
TGGGTCAATTGCACCTGATACTCCAATGAGCTCTAGTTTGTACCCATCAT
TAAATGACTTCATGGGCCTACAAATTTCTCAGGCTACACTCCAACAAAAC
ATGCCATCTACCAGTGGGCAAGTTGTACAGTACCAAGCTCCATCCCAACA
GATGGTTGCTCCAGTCACTGGTAACCAAAACATGGGATTGATGCGATCAG
AAATAAAACAAGGCATTCGACAAATTATCGCTTGTAAAGATCAAAAAGGA
AAGATGGGAATTCGTGTGCAACACGTTAACAAAGGTGTTTTCGTCTCATT
TGTACAAAAGGGATCACCAGCAGCTATGGCTGGATTAAGATTTGGAGACC
AAATTTTACAGATTAATGGTGAAACTCTTGCCGGGTTCGACCGTGATAAG
GTTatgaaattgatcaaaaaacAACCAGCTGAAAGAATCGAATTAGCTGT
TAGAGACAGGCCTTTTGAACGAGCTATCACGATGCAAAAAGACAGTGTAG
GTCACGTTggttttatttacaaaaatggTAAAATCAACTCCATCGTCAAA
GACTCTTCAGCAGCTAGAAATGGTTTATTGATCGAGCATAATTTATTGGA
AGTCAATGGTCAAAATGTTGTGGGACTCAATGATAAGGAAATCTCAAAGA
TTTTATCGGAATCAGAAAGAAGTTTAACGATCACAATCATGCCAAGTTTC
ATCTACGAGCATATGGTCAAATGTATGTCTGATAGTCTCGTCAAGAAGTT
GATGGATCACTCTGTTCCTGacttgtaaATGTCTCTCTACCCATCATTGG
AAGATATGTCTGTTGCCAAACATgtgGAGGCACAGGCATATCAAGAAACA
CAACATCATCAACAAGCAATTGCATCTGGGTCAATTGCACCTGATACTCC
AATGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAA
TTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGCAAGTT
GTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAA
CCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAA
TTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACAC
GTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGC
TATGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAAA
CTCTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacAA
CCAGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAGC
TATCACGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaaa
atggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGGT
TTATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGGG
ACTCAATGATAAGGAAATCTCAAAGATTTTATCGGAATCAGAAAGAAGTT
TAACGATCACAATCATGCCAAGTTTCATCTACGAGCATATGGTCAAATGT
ATGTCTGATAGTCTCGTCAAGAAGTTGATGGATCACTCTGTTCCTGactt
gtaaATGTCTCTCTACCCATCATTGGAAGATATGTCTGTTGCCAAACATg
tgGAGGCACAGGCATATCAAGAAACACAACATCATCAACAAGCAATTGCA
TCTGGGTCAATTGCACCTGATACTCCAATGAGCTCTAGTTTGTACCCATC
ATTAAATGACTTCATGGGCCTACAAATTTCTCAGGCTACACTCCAACAAA
ACATGCCATCTACCAGTGGGCAAGTTGTACAGTACCAAGCTCCATCCCAA
CAGATGGTTGCTCCAGTCACTGGTAACCAAAACATGGGATTGATGCGATC
AGAAATAAAACAAGGCATTCGACAAATTATCGCTTGTAAAGATCAAAAAG
GAAAGATGGGAATTCGTGTGCAACACGTTAACAAAGGTGTTTTCGTCTCA
TTTGTACAAAAGGGATCACCAGCAGCTATGGCTGGATTAAGATTTGGAGA
CCAAATTTTACAGATTAATGGTGAAACTCTTGCCGGGTTCGACCGTGATA
AGGTTatgaaattgatcaaaaaacAACCAGCTGAAAGAATCGAATTAGCT
GTTAGAGACAGGCCTTTTGAACGAGCTATCACGATGCAAAAAGACAGTGT
AGGTCACGTTggttttatttacaaaaatggTAAAATCAACTCCATCGTCA
AAGACTCTTCAGCAGCTAGAAATGGTTTATTGATCGAGCATAATTTATTG
GAAGTCAATGGTCAAAATGTTGTGGGACTCAATGATAAGGAAATCTCAAA
GATTTTATCGGAATCAGAAAGAAGTTTAACGATCACAATCATGCCAAGTT
TCATCTACGAGCATATGGTCAAATGTATGTCTGATAGTCTCGTCAAGAAG
TTGATGGATCACTCTGTTCCTGacttgtaaATGTCTCTCTACCCATCATT
GGAAGATATGTCTGTTGCCAAACATgtgGAGGCACAGGCATATCAAGAAA
CACAACATCATCAACAAGCAATTGCATCTGGGTCAATTGCACCTGATACT
CCAATGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACA
AATTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGCAAG
TTGTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGT
AACCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACA
AATTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAAC
ACGTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCA
GCTATGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGA
AACTCTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaac
AACCAGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGA
GCTATCACGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaa
aaatggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATG
GTTTATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTG
GGACTCAATGATAAGGAAATCTCAAAGATTTTATCGGAATCAGAAAGAAG
TTTAACGATCACAATCATGCCAAGTTTCATCTACGAGCATATGGTCAAAT
GTATGTCTGATAGTCTCGTCAAGAAGTTGATGGATCACTCTGTTCCTGac
ttgtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023553-exon-sc0000456-1491911889:136333..136784 | TCONS_00023553-exon-sc0000456-1491911889:136333..136784 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:136333..136784 | TCONS_00023553-exon-sc0000456-1510915933:136333..136784 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:136333..136784 | TCONS_00023553-exon-sc0000456-1575043694:136333..136784 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1491911889:140634..140714 | TCONS_00023553-exon-sc0000456-1491911889:140634..140714 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:140634..140714 | TCONS_00023553-exon-sc0000456-1510915933:140634..140714 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:140634..140714 | TCONS_00023553-exon-sc0000456-1575043694:140634..140714 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1491911889:140940..141029 | TCONS_00023553-exon-sc0000456-1491911889:140940..141029 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:140940..141029 | TCONS_00023553-exon-sc0000456-1510915933:140940..141029 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:140940..141029 | TCONS_00023553-exon-sc0000456-1575043694:140940..141029 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1491911889:141386..141898 | TCONS_00023553-exon-sc0000456-1491911889:141386..141898 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:141386..141898 | TCONS_00023553-exon-sc0000456-1510915933:141386..141898 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:141386..141898 | TCONS_00023553-exon-sc0000456-1575043694:141386..141898 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1491911889:142112..142203 | TCONS_00023553-exon-sc0000456-1491911889:142112..142203 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:142112..142203 | TCONS_00023553-exon-sc0000456-1510915933:142112..142203 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:142112..142203 | TCONS_00023553-exon-sc0000456-1575043694:142112..142203 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1491911889:142909..143373 | TCONS_00023553-exon-sc0000456-1491911889:142909..143373 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1510915933:142909..143373 | TCONS_00023553-exon-sc0000456-1510915933:142909..143373 | Clytia hemisphaerica | exon |
| TCONS_00023553-exon-sc0000456-1575043694:142909..143373 | TCONS_00023553-exon-sc0000456-1575043694:142909..143373 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000456 | supercontig | sc0000456:136333..143373 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00023553 vs. Swiss-Prot (Human)
Match: SDCB1 (Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1) HSP 1 Score: 329.717 bits (844), Expect = 3.947e-108 Identity = 162/299 (54.18%), Postives = 217/299 (72.58%), Query Frame = 3
Query: 408 MSLYPSLEDMSVAKHVEAQAYQETQHHQQAIASGSIAP---DTPMSSSLYPSLNDFMGLQISQATLQQNMPSTSGQVVQYQA---PS--QQMVAPVTGNQNMGLMRSEIKQGIRQIIACKDQKGKMGIRVQHVNKGVFVSFVQKGSPAAMAGLRFGDQILQINGETLAGFDRDKVMKLIKKQPAERIELAVRDRPFERAITMQKDSVGHVGFIYKNGKINSIVKDSSAARNGLLIEHNLLEVNGQNVVGLNDKEISKILSESERSLTITIMPSFIYEHMVKCMSDSLVKKLMDHSVPDL 1280
MSLYPSLED+ V K ++AQ AI S + AP D + LYP L+ +MGL +++ ++ N+ SG +Q Q PS MVAPVTGN ++G+ R+EIKQGIR++I CKDQ GK+G+R++ ++ G+FV VQ SPA++ GLRFGDQ+LQINGE AG+ DK K++K+ E+I + +RDRPFER ITM KDS GHVGFI+KNGKI SIVKDSSAARNGLL EHN+ E+NGQNV+GL D +I+ ILS S +TITIMP+FI+EH++K M+ S++K LMDH++P++
Sbjct: 1 MSLYPSLEDLKVDKVIQAQTAFSANPANPAILSEASAPIPHDGNLYPRLYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN-DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
The following BLAST results are available for this feature:
|
