TCONS_00023554 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023554
Unique NameTCONS_00023554
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023554 ID=TCONS_00023554|Name=TCONS_00023554|organism=Clytia hemisphaerica|type=transcript|length=1164bp
GTAGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAA
TTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGCAAGTT
GTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAA
CCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAA
TTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACAC
GTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGC
TATGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAAA
CTCTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacAA
CCAGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAGC
TATCACGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaaa
atggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGGT
TTATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGGG
ACTCAATGATAAGGAAATCTCAAAGATTTTATCGGAATCAGAAAGAAGTT
TAACGATCACAATCATGCCAAGTTTCATCTACGAGCATATGGTCAAATGT
ATGTCTGATAGTCTCGTCAAGAAGTTGATGGATCACTCTGTTCCTGactt
gtaaattttgcttaaaaGGCTGAACACTCTAAAttaattttggggaaaaa
ataAACTCATTGTTTGGAGACAGTAGAAAAGAATTGCTGTTTGTATATAA
TAAAAgaatcttgtttttattaaatggTTATTGTTTATTACgtatttgtt
ttattatttttctatctTTAAATTCACTCACCCTCTTTGATTGActgatt
gttttttatttgattatggAATTCTAAGTCATTCTTTTATAAATGACGTA
cctttctttagaaaaaaaatagtacttcaaaaatcattgtatatttatta
aaaaaataaagacaTCTTAACgcatttaattctttttttttttttttcat
ttctttaaacCGAGTGAATAATTCTATCAGTTTCACTTCATATCCAAACT
CCCAAAAAACCTTC
Run BLAST on NCBI

transcript from alignment at sc0000456:139841..143373+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023554 ID=TCONS_00023554|Name=TCONS_00023554|organism=Clytia hemisphaerica|type=transcript|length=3533bp|location=Sequence derived from alignment at sc0000456:139841..143373+ (Clytia hemisphaerica)
GTAGAGCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAA
TTTCTCAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGGTAAGT
ATCCAGATTCATTCATCTTCAAATCAATTATATTgctaatattttggaaa
aagaaataaaacataGAAACTTTGATTTGCTTTTCTTAATGAAGTTTTTA
AATTCATTGACATCTGATAGCATATGACTAATGAAGTCTCAATGATAGCC
TAAACAAGATCAATTTTGGTAACAAATACAAGATGATGGTTCTATATGAA
CAGGTGCACTATAGGAAGTCTATTTGGTGGGGTTAATTTTCtatgatttc
aaatttttccttttaaatttgatttttagtaTCGTGTATATGGGAAAAGA
CTTAATTTGTTATtaatatttgattaaatttacTTTACCTTCAGCAAGTT
GTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAA
CCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAA
TTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACAC
GTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGC
TATGGCTGGATTAAGNCCGACACAGtcggtcaaatagctttttcagtcgg
acattgaccaatgaccgacgcttatttgcagccctggatcaaaatctaaa
ttttaaataCAGTAACAtctgatgaattttttttttattttaggtgGAGG
CACAGGCATATCAAGAAACACAACATCATCAACAAGCAATTGCATCTGGG
TCAATTGCACCTGATACTCCAATGGTAAGCATTACCAACTGAGATGAGTG
CGTAGAAACCAAAAACTCAAACCCTAAAAtagtgagaaaaaaatttaatg
tgaTGTATAAATTGATTGTGTGGATATTTCGTAAAGGCTTTTCCTGGCTT
TTCCAGGCTTTTCCAGAATCTAGAACAAAATTCCTAATCTTTTTAATGAA
TTATTATTCATTTTATATCTAGTTATATTATCCCCTTTTCATTTTGTAGA
GCTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAATTTCT
CAGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGGTAAGTATTCA
GATTCATTCATCTTCACATCAAAATCAATTATATTgctaatattttggaa
aaagaaataaaacataGAAACTTTGATTTGCTTTTCTTAATGAAGTTTTT
GAATTCATTGACATCTGATAGCATATGACTAATGAAGGCTCAATGATAGC
CTAAACAAGATCAATTTTGGTAACAAATACAAGATGATGGTTCTATGTGA
ACAGGTGCACTATAGGAAGTCTATTTGGTGCAGTTAATTTTCtatgattt
caaatttttctttttaaatttgatttttagcaTCGTGTATATGGGAAAAG
AGTTAATTTGTTATtaatatttgattaaatttacTTTACCTTCAGCAAGT
TGTACAGTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTA
ACCAAAACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAA
ATTATCGCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACA
CGTTAACAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAG
CTATGGCTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAA
ACTCTTGCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacA
ACCAGCTGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAG
CTATCACGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaa
aatggTAAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGG
TTTATTGATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGG
GACTCAATGTAAGATTAATTTCGTTTGGATTTTTTTAAGTTAAGCGATTC
GCTAGGGATGTTATACACATTGGATTGGTTTATGGCAGTGTTAAAGTAAA
AGTATTTTTAGCAATTTATTCTTATCTTATTGAATTTTGTTgacatttat
taaattttagaGTAGTTGTTATAGTTGACTgattgattttatcaaaatat
ttatttttgtatctttttcaGGATAAGGAAATCTCAAAGATTTTATCGGA
ATCAGAAAGAAGTTTAACGATCACAATCATGCCAAGTTTCATCTACGAGC
ATATGGTCAAATGGTAAGAACTagaattttttggatttaaaaTGTAGGTC
GAAGAGGCTCtctatattaaaagtcaaaaaatgacgAGAATTAATGtgca
gatttttttattttacgtaGTATCTTTTCGTAAAGTATGATTTCTGCGCT
ATATGAATTTGGAAAGACctacaatctttcaagaaatatattgagaattc
cggttattttgacgtttttcgagatttaaagttcgggcgaaaaagccgat
tttgggctatctctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNactaagtcttaagtctagcgttaaaactcagagttaaaactctaccc
ttcgaacctactttagagcacttacaaatcgattgtggtttcaaaacacc
ccggtggatttcccttttgtctcaaatatttcttgaaggattgtagcaag
cattgaatgaaaaaaaaactgaaatattgTATTTCTGACTAAATTAtctt
aatttctttcttttatagTATGTCTGATAGTCTCGTCAAGAAGTTGATGG
ATCACTCTGTTCCTGacttgtaaattttgcttaaaaGGCTGAACACTCTA
AAttaattttggggaaaaaataAACTCATTGTTTGGAGACAGTAGAAAAG
AATTGCTGTTTGTATATAATAAAAgaatcttgtttttattaaatggTTAT
TGTTTATTACgtatttgttttattatttttctatctTTAAATTCACTCAC
CCTCTTTGATTGActgattgttttttatttgattatggAATTCTAAGTCA
TTCTTTTATAAATGACGTAcctttctttagaaaaaaaatagtacttcaaa
aatcattgtatatttattaaaaaaataaagacaTCTTAACgcatttaatt
ctttttttttttttttcatttctttaaacCGAGTGAATAATTCTATCAGT
TTCACTTCATATCCAAACTCCCAAAAAACCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013241XLOC_013241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023554-exon-sc0000456-1491911889:139841..139898TCONS_00023554-exon-sc0000456-1491911889:139841..139898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1510915933:139841..139898TCONS_00023554-exon-sc0000456-1510915933:139841..139898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1575043694:139841..139898TCONS_00023554-exon-sc0000456-1575043694:139841..139898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1491911889:140994..141029TCONS_00023554-exon-sc0000456-1491911889:140994..141029Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1510915933:140994..141029TCONS_00023554-exon-sc0000456-1510915933:140994..141029Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1575043694:140994..141029TCONS_00023554-exon-sc0000456-1575043694:140994..141029Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1491911889:141386..141898TCONS_00023554-exon-sc0000456-1491911889:141386..141898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1510915933:141386..141898TCONS_00023554-exon-sc0000456-1510915933:141386..141898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1575043694:141386..141898TCONS_00023554-exon-sc0000456-1575043694:141386..141898Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1491911889:142112..142203TCONS_00023554-exon-sc0000456-1491911889:142112..142203Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1510915933:142112..142203TCONS_00023554-exon-sc0000456-1510915933:142112..142203Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1575043694:142112..142203TCONS_00023554-exon-sc0000456-1575043694:142112..142203Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1491911889:142909..143373TCONS_00023554-exon-sc0000456-1491911889:142909..143373Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1510915933:142909..143373TCONS_00023554-exon-sc0000456-1510915933:142909..143373Clytia hemisphaericaexon
TCONS_00023554-exon-sc0000456-1575043694:142909..143373TCONS_00023554-exon-sc0000456-1575043694:142909..143373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:139841..143373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
38.0747	39.1036	16.8569	67.0754	14.4627	2.46328	6.88043	0.921714	78.3855	100.378	35.9996	62.7086	54.1522	12.3262	89.9702	129.714	1.04362	68.8052	132.919	146.974	76.8763	97.9425	15.9726	30.7511	0.972035	0.535758	130.386	140.272	200.355	117.802
Blast
[Close]
BLAST of TCONS_00023554 vs. Swiss-Prot (Human)
Match: SDCB1 (Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.453e-100
Identity = 143/251 (56.97%), Postives = 193/251 (76.89%), Query Frame = 2 
Query:   14 LYPSLNDFMGLQISQATLQQNMPSTSGQVVQYQA---PS--QQMVAPVTGNQNMGLMRSEIKQGIRQIIACKDQKGKMGIRVQHVNKGVFVSFVQKGSPAAMAGLRFGDQILQINGETLAGFDRDKVMKLIKKQPAERIELAVRDRPFERAITMQKDSVGHVGFIYKNGKINSIVKDSSAARNGLLIEHNLLEVNGQNVVGLNDKEISKILSESERSLTITIMPSFIYEHMVKCMSDSLVKKLMDHSVPDL 751
            LYP L+ +MGL +++  ++ N+   SG  +Q Q    PS    MVAPVTGN ++G+ R+EIKQGIR++I CKDQ GK+G+R++ ++ G+FV  VQ  SPA++ GLRFGDQ+LQINGE  AG+  DK  K++K+   E+I + +RDRPFER ITM KDS GHVGFI+KNGKI SIVKDSSAARNGLL EHN+ E+NGQNV+GL D +I+ ILS S   +TITIMP+FI+EH++K M+ S++K LMDH++P++
Sbjct:   49 LYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN-DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
The following BLAST results are available for this feature:
BLAST of TCONS_00023554 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDCB11.453e-10056.97Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1[more]
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