TCONS_00023555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023555
Unique NameTCONS_00023555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1158

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023555 ID=TCONS_00023555|Name=TCONS_00023555|organism=Clytia hemisphaerica|type=transcript|length=1158bp
CTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAATTTCTC
AGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGCAAGTTGTACAG
TACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAACCAAAA
CATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAATTATCG
CTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACACGTTAAC
AAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGCTATGGC
TGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAAACTCTTG
CCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacAACCAGCT
GAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAGCTATCAC
GATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaaaatggTA
AAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGGTTTATTG
ATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGGGACTCAA
TGATAAGGAAATCTCAAAGATTTTATCGGAATCAGAAAGAAGTTTAACGA
TCACAATCATGCCAAGTTTCATCTACGAGCATATGGTCAAATGTATGTCT
GATAGTCTCGTCAAGAAGTTGATGGATCACTCTGTTCCTGacttgtaaat
tttgcttaaaaGGCTGAACACTCTAAAttaattttggggaaaaaataAAC
TCATTGTTTGGAGACAGTAGAAAAGAATTGCTGTTTGTATATAATAAAAg
aatcttgtttttattaaatggTTATTGTTTATTACgtatttgttttatta
tttttctatctTTAAATTCACTCACCCTCTTTGATTGActgattgttttt
tatttgattatggAATTCTAAGTCATTCTTTTATAAATGACGTAcctttc
tttagaaaaaaaatagtacttcaaaaatcattgtatatttattaaaaaaa
taaagacaTCTTAACgcatttaattctttttttttttttttcatttcttt
aaacCGAGTGAATAATTCTATCAGTTTCACTTCATATCCAAACTCCCAAA
AAACCTTC
Run BLAST on NCBI

transcript from alignment at sc0000456:139847..143373+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023555 ID=TCONS_00023555|Name=TCONS_00023555|organism=Clytia hemisphaerica|type=transcript|length=3527bp|location=Sequence derived from alignment at sc0000456:139847..143373+ (Clytia hemisphaerica)
CTCTAGTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAATTTCTC
AGGCTACACTCCAACAAAACATGCCATCTACCAGTGGGGTAAGTATCCAG
ATTCATTCATCTTCAAATCAATTATATTgctaatattttggaaaaagaaa
taaaacataGAAACTTTGATTTGCTTTTCTTAATGAAGTTTTTAAATTCA
TTGACATCTGATAGCATATGACTAATGAAGTCTCAATGATAGCCTAAACA
AGATCAATTTTGGTAACAAATACAAGATGATGGTTCTATATGAACAGGTG
CACTATAGGAAGTCTATTTGGTGGGGTTAATTTTCtatgatttcaaattt
ttccttttaaatttgatttttagtaTCGTGTATATGGGAAAAGACTTAAT
TTGTTATtaatatttgattaaatttacTTTACCTTCAGCAAGTTGTACAG
TACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAACCAAAA
CATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAATTATCG
CTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACACGTTAAC
AAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGCTATGGC
TGGATTAAGNCCGACACAGtcggtcaaatagctttttcagtcggacattg
accaatgaccgacgcttatttgcagccctggatcaaaatctaaattttaa
ataCAGTAACAtctgatgaattttttttttattttaggtgGAGGCACAGG
CATATCAAGAAACACAACATCATCAACAAGCAATTGCATCTGGGTCAATT
GCACCTGATACTCCAATGGTAAGCATTACCAACTGAGATGAGTGCGTAGA
AACCAAAAACTCAAACCCTAAAAtagtgagaaaaaaatttaatgtgaTGT
ATAAATTGATTGTGTGGATATTTCGTAAAGGCTTTTCCTGGCTTTTCCAG
GCTTTTCCAGAATCTAGAACAAAATTCCTAATCTTTTTAATGAATTATTA
TTCATTTTATATCTAGTTATATTATCCCCTTTTCATTTTGTAGAGCTCTA
GTTTGTACCCATCATTAAATGACTTCATGGGCCTACAAATTTCTCAGGCT
ACACTCCAACAAAACATGCCATCTACCAGTGGGGTAAGTATTCAGATTCA
TTCATCTTCACATCAAAATCAATTATATTgctaatattttggaaaaagaa
ataaaacataGAAACTTTGATTTGCTTTTCTTAATGAAGTTTTTGAATTC
ATTGACATCTGATAGCATATGACTAATGAAGGCTCAATGATAGCCTAAAC
AAGATCAATTTTGGTAACAAATACAAGATGATGGTTCTATGTGAACAGGT
GCACTATAGGAAGTCTATTTGGTGCAGTTAATTTTCtatgatttcaaatt
tttctttttaaatttgatttttagcaTCGTGTATATGGGAAAAGAGTTAA
TTTGTTATtaatatttgattaaatttacTTTACCTTCAGCAAGTTGTACA
GTACCAAGCTCCATCCCAACAGATGGTTGCTCCAGTCACTGGTAACCAAA
ACATGGGATTGATGCGATCAGAAATAAAACAAGGCATTCGACAAATTATC
GCTTGTAAAGATCAAAAAGGAAAGATGGGAATTCGTGTGCAACACGTTAA
CAAAGGTGTTTTCGTCTCATTTGTACAAAAGGGATCACCAGCAGCTATGG
CTGGATTAAGATTTGGAGACCAAATTTTACAGATTAATGGTGAAACTCTT
GCCGGGTTCGACCGTGATAAGGTTatgaaattgatcaaaaaacAACCAGC
TGAAAGAATCGAATTAGCTGTTAGAGACAGGCCTTTTGAACGAGCTATCA
CGATGCAAAAAGACAGTGTAGGTCACGTTggttttatttacaaaaatggT
AAAATCAACTCCATCGTCAAAGACTCTTCAGCAGCTAGAAATGGTTTATT
GATCGAGCATAATTTATTGGAAGTCAATGGTCAAAATGTTGTGGGACTCA
ATGTAAGATTAATTTCGTTTGGATTTTTTTAAGTTAAGCGATTCGCTAGG
GATGTTATACACATTGGATTGGTTTATGGCAGTGTTAAAGTAAAAGTATT
TTTAGCAATTTATTCTTATCTTATTGAATTTTGTTgacatttattaaatt
ttagaGTAGTTGTTATAGTTGACTgattgattttatcaaaatatttattt
ttgtatctttttcaGGATAAGGAAATCTCAAAGATTTTATCGGAATCAGA
AAGAAGTTTAACGATCACAATCATGCCAAGTTTCATCTACGAGCATATGG
TCAAATGGTAAGAACTagaattttttggatttaaaaTGTAGGTCGAAGAG
GCTCtctatattaaaagtcaaaaaatgacgAGAATTAATGtgcagatttt
tttattttacgtaGTATCTTTTCGTAAAGTATGATTTCTGCGCTATATGA
ATTTGGAAAGACctacaatctttcaagaaatatattgagaattccggtta
ttttgacgtttttcgagatttaaagttcgggcgaaaaagccgattttggg
ctatctctttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNact
aagtcttaagtctagcgttaaaactcagagttaaaactctacccttcgaa
cctactttagagcacttacaaatcgattgtggtttcaaaacaccccggtg
gatttcccttttgtctcaaatatttcttgaaggattgtagcaagcattga
atgaaaaaaaaactgaaatattgTATTTCTGACTAAATTAtcttaatttc
tttcttttatagTATGTCTGATAGTCTCGTCAAGAAGTTGATGGATCACT
CTGTTCCTGacttgtaaattttgcttaaaaGGCTGAACACTCTAAAttaa
ttttggggaaaaaataAACTCATTGTTTGGAGACAGTAGAAAAGAATTGC
TGTTTGTATATAATAAAAgaatcttgtttttattaaatggTTATTGTTTA
TTACgtatttgttttattatttttctatctTTAAATTCACTCACCCTCTT
TGATTGActgattgttttttatttgattatggAATTCTAAGTCATTCTTT
TATAAATGACGTAcctttctttagaaaaaaaatagtacttcaaaaatcat
tgtatatttattaaaaaaataaagacaTCTTAACgcatttaattcttttt
ttttttttttcatttctttaaacCGAGTGAATAATTCTATCAGTTTCACT
TCATATCCAAACTCCCAAAAAACCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013241XLOC_013241Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023555-exon-sc0000456-1491911889:139847..139934TCONS_00023555-exon-sc0000456-1491911889:139847..139934Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1510915933:139847..139934TCONS_00023555-exon-sc0000456-1510915933:139847..139934Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1575043694:139847..139934TCONS_00023555-exon-sc0000456-1575043694:139847..139934Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1491911889:141386..141898TCONS_00023555-exon-sc0000456-1491911889:141386..141898Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1510915933:141386..141898TCONS_00023555-exon-sc0000456-1510915933:141386..141898Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1575043694:141386..141898TCONS_00023555-exon-sc0000456-1575043694:141386..141898Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1491911889:142112..142203TCONS_00023555-exon-sc0000456-1491911889:142112..142203Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1510915933:142112..142203TCONS_00023555-exon-sc0000456-1510915933:142112..142203Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1575043694:142112..142203TCONS_00023555-exon-sc0000456-1575043694:142112..142203Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1491911889:142909..143373TCONS_00023555-exon-sc0000456-1491911889:142909..143373Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1510915933:142909..143373TCONS_00023555-exon-sc0000456-1510915933:142909..143373Clytia hemisphaericaexon
TCONS_00023555-exon-sc0000456-1575043694:142909..143373TCONS_00023555-exon-sc0000456-1575043694:142909..143373Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:139847..143373 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
30.977	31.8607	109.004	60.5917	35.2871	24.3451	49.8554	56.1143	54.952	19.6861	163.436	9.32452	129.287	70.3441	42.3553	27.388	37.0287	23.8552	47.5028	104.989	50.6189	15.4272	82.8592	76.8005	88.181	135.314	169.311	142.747	80.2784	85.882
Blast
[Close]
BLAST of TCONS_00023555 vs. Swiss-Prot (Human)
Match: SDCB1 (Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.499e-100
Identity = 143/251 (56.97%), Postives = 193/251 (76.89%), Query Frame = 2 
Query:    8 LYPSLNDFMGLQISQATLQQNMPSTSGQVVQYQA---PS--QQMVAPVTGNQNMGLMRSEIKQGIRQIIACKDQKGKMGIRVQHVNKGVFVSFVQKGSPAAMAGLRFGDQILQINGETLAGFDRDKVMKLIKKQPAERIELAVRDRPFERAITMQKDSVGHVGFIYKNGKINSIVKDSSAARNGLLIEHNLLEVNGQNVVGLNDKEISKILSESERSLTITIMPSFIYEHMVKCMSDSLVKKLMDHSVPDL 745
            LYP L+ +MGL +++  ++ N+   SG  +Q Q    PS    MVAPVTGN ++G+ R+EIKQGIR++I CKDQ GK+G+R++ ++ G+FV  VQ  SPA++ GLRFGDQ+LQINGE  AG+  DK  K++K+   E+I + +RDRPFER ITM KDS GHVGFI+KNGKI SIVKDSSAARNGLL EHN+ E+NGQNV+GL D +I+ ILS S   +TITIMP+FI+EH++K M+ S++K LMDH++P++
Sbjct:   49 LYPELSQYMGLSLNEEEIRANVAVVSGAPLQGQLVARPSSINYMVAPVTGN-DVGIRRAEIKQGIREVILCKDQDGKIGLRLKSIDNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMTIRDRPFERTITMHKDSTGHVGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMPAFIFEHIIKRMAPSIMKSLMDHTIPEV 298
The following BLAST results are available for this feature:
BLAST of TCONS_00023555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SDCB11.499e-10056.97Syntenin-1 OS=Homo sapiens GN=SDCBP PE=1 SV=1[more]
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