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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023578 ID=TCONS_00023578|Name=TCONS_00023578|organism=Clytia hemisphaerica|type=transcript|length=1986bp
cttttccattttcaccctgaaaagtggccaaaatgactaaaagtagacaa
aaaaaattgaaattttctaacatttccaccctgaaatttgtcaaaaacta
ccaaaaccaaaagtcgaccctgcCAGAtaaacatcttgaaaattagtaaa
tttgtgACCCTTTTATTTTAATTGTGGGACCCTTTTTAATTTacaccctg
tcagatatcttcagagcctaaaaaagggaccctgatcaccctgaccagcg
gcacgtccccgtacccaaaTTTGCCTATGTCGTAAGTGCCCCTGGCTTTT
TTCGCTAGATGATGAGCAGAAGTCTAGTTTCATGAAGGCctctttcattc
tatttctccCGCCCAATTTCACACCTTTTAGTGTCACAACCGCCCCAATT
TGAATTAACTTTTAGTCATTAGCGCAATCCTCAGCTGTTTttgtattgaa
ttttttttgtgtcgTGCGCATTTTATGGAgatttctttttgttgtttttt
atattgCATACCCTTGTTCACacatttgttttgtttatttaatgACCTGA
CATTGGAAATAATATTACGACCTTCTCCAGTTTCAAGTATTTGCGCAAGT
TCACGtatGTTATGGAAACTCATATAGAAAGCCATGGCAACAGCAATGCT
GGTACCAAACGTAAACAAGGCAAACTCACTGACCAATATCCAGTTGTCAA
GAGGAACCGTTTTAATGGAATGACTGAAGAAGAAGTCATGNCACTGACCA
ATATCCAGTTGTCAAGAGGAACCGATTTAATGGAATGACTGAAGAAGAAG
TCATGAAGCGGGGACTACCGGATTATTTACGAGATTCTCTAGATATTGTG
TTCGTCGGAATCAACCCTGGGTTAGCGGCCGCATACACTGGGAACTACTA
CACTGGCCCTGGTAATCATTTTTGGAAATGTCTGCACTTGTCTGGCTTTA
TAGAACAACCTATGACTGCTAAAGATGATACGCGATTATTTCGAGATTAT
AATATCGGATTTACAAACATGGTAGTACGAACTACGAAAGGGAGCAACGA
TTTATCGAAGAAGGAGCTTGAAGAGGGCGGTAAAATTCTAACCGTCAAAA
TGCAACAGTATCAACCGAAAATTGTCGTCTTTAACGGGAAAGTCAGTTAT
CaagttttttcaaagaaaaagaaattccatTTTGGTTTACAAGAGGAGAG
TGTTGAAGGGACCAACACACGTATTTGGGTGATGCCTTCGTCTTCTGCTC
GTTGCGCCCAACTTCCTAGGGCGTCTGACAAAGCGCCCTTTTTTAAAGCT
TTGAAACGATGTCGCAATTATTTGAAAGGTGAATCTAATAATGTGGTGGA
TGAACAGAAAGAATTCGTTTTCGCTGATTTGACATTAAAAGGATTTCCAA
GGAAATCTACTGTGACATCAACGTAGGGATAACAATATCTTTTATTTATT
ATATCAGTAGAGTTTTATTCTACTCATAAACCTAATGAGTATGCTTAGAT
AGGTTCAGgatatatattttaaattttaaagaaaagccTTTGATTGTTAA
AAGAAATTTGGATTGTCATGGGTAAGTACGGTAGTGTTTGTTATCCTCTG
GAATCAATTTAGTTGAAagttatttgaaaaataaatgaaatgacTTCCTG
CGGCGAAGAATTTAAACAAACTACAGCTGTTTTAAATGCCCAAACAAAGT
CCACTTTTAGTTGAATTACTAGGTATTATACTGAAATTAATTTATCCCTA
ATttataatattatattttatcttttatttacGAATCCTAATTTAtactt
taatgaaaatgtcaatttttaaattatcattttttagcGATAATTGGCAA
TATTGGCTTTTATGAAATGAATCGATTTTGAATCTTTCTTTGGAACATGA
ATGTTGCTTTTAAGATATGATTGAATTTGAATCATTAGTGCCCGTACTAC
TTCCGAATCGAGGTCCTATTCCTGCAATGAAATACA Run BLAST on NCBI protein sequence of TCONS_00023578-protein >TCONS_00023578-protein ID=TCONS_00023578-protein|Name=TCONS_00023578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=213bp
MTEEEVMKRGLPDYLRDSLDIVFVGINPGLAAAYTGNYYTGPGNHFWKCL
HLSGFIEQPMTAKDDTRLFRDYNIGFTNMVVRTTKGSNDLSKKELEEGGK
ILTVKMQQYQPKIVVFNGKVSYQVFSKKKKFHFGLQEESVEGTNTRIWVM
PSSSARCAQLPRASDKAPFFKALKRCRNYLKGESNNVVDEQKEFVFADLT
LKGFPRKSTVTST Run BLAST on NCBI transcript from alignment at sc0000456:238608..248944+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023578 ID=TCONS_00023578|Name=TCONS_00023578|organism=Clytia hemisphaerica|type=transcript|length=10337bp|location=Sequence derived from alignment at sc0000456:238608..248944+ (Clytia hemisphaerica)
cttttccattttcaccctgaaaagtggccaaaatgactaaaagtagacaa
aaaaaattgaaattttctaacatttccaccctgaaatttgtcaaaaacta
ccaaaaccaaaagtcgaccctgcCAGAtaaacatcttgaaaattagtaaa
tttgtgACCCTTTTATTTTAATTGTGGGACCCTTTTTAATTTacaccctg
tcagatatcttcagagcctaaaaaagggaccctgatcaccctgaccagcg
gcacgtccccgtacccaaaTTTGCCTATGTCGTAAGTGCCCCTGGCTTTT
TTCGCTAGATGATGAGCAGAAGTCTAGTTTCATGAAGGCctctttcattc
tatttctccCGCCCAATTTCACACCTTTTAGTGTCACAACCGCCCCAATT
TGAATTAACTTTTAGTCATTAGCGCAATCCTCAGCTGTTTttgtattgaa
ttttttttgtgtcgTGCGCATTTTATGGAgatttctttttgttgtttttt
atattgCATACCCTTGTTCACacatttgttttgtttatttaatgACCTGA
CATTGGAAATAATATTACGACCTTCTCCAGTTTCAAGTATTTGCGCAAGT
TCACGGTAAGTTCGTATTATTTCTCAATCtatttttatgataaaaatgat
AACACAAAGCTCAAAGAAAGAAGGGAAGGGAAAGAAGGCAAATTGTATGA
TGTATGAAAGACTGTTGGTCTGGTTTTGTAGAGCTTGCAGCTTATTTCTT
TGTAAATTGTTTGCTAATTTGTCAATATAGACAGCACAGGCTGATGGCAG
ACAAAAAAGGTTATtcaaagatattttcagttctaatccaaggtagaaca
aaccacagatatctaagcccgaagggctagataggcaactttaagctttc
tccagcaaaaaaagtgaagctaaaatttgactttttattgagattcgatt
gcgctcgacaatcgaatttcaatcggtcgattgcgttcgatttggttcga
ctggtttaatcgtcgattccgttcgattgagatcgtctggactaGTATCT
GActtttagcaagcttttccctctccagacggcaaaacGGCCAGTTTTAA
AGCActgtttctaccaaaacggacggacggacagacagacaggcggaaag
ttgcaaatgaaaggccctatcgctagcgtTGCTGGGCCAATAATAGTTAT
AAAGAATAATAGATAATAAAGAATAATTAATATACCCAGACATCTGACCA
CAAGGAGAGCAAGtgttgaaaatataaataaaataaagatgaaacataaa
aaaggactagtatttttataattaaccatttttcatttatctATCAGGAA
ACTATAGTTGTCCCTTAGGCAGTGTAGTAAGAAACTATGGGTCAATCTAG
AGAAGTGAATACTTACACTTACTCTACAAAAAATATAGGTATTTAGGTGG
AATTTGAGGCTGAAACCTTTTGTGTTtaaagtactttaggcgtactttcg
caagcagaaacttttgcaaggatgaaaaatcgcgaaatgcatgacattta
ctttcgcgaatttgatgaaaaaatgtttttcgcgagcataaacttttggg
aatcgttggataaaaatgaaaattttctaacgaaaattgccttaaaagtg
aaaaatattccttaaatctgATAAAGACAGTTGCTCTTAAACTTTTAAAA
GGCATTAAAGGATAAAAATATGCCgaaaattcgatatttattacgatttc
gaggttttatagatttccactttttttgagaatttttcgcgggcataaac
tttcgcgaattgccctattaagaattttcaaatacatttacttttgcaaa
aaaggtcaaaatttgcaaaaatcgcgaaagtttctgctcgcaaaagtttg
tacgcctaaagtacactGTTTATGGCTTTCTTTCCCAACAGTGATGTTTT
TTAGAaaccagttttcagttttttacaAGGAAGTGAAAAAATGCCCTATT
AGCTATTTACCCctcaaaacctacaaaatggtttttctcaaATAACGTCA
TAAAATAGTCcttttgttcttaaattttgaatAGTGATTCGCTGCAAAGT
TACAAATGTTATGATTAGATcattggtacctaaatattttcaaaactgca
tgttaaaatcaaattacaccttaaaacctacactattacaccttaaaacc
tacaaacattgACCCCTTGATCACAACTTGCTGAAACATTAAAATTGCAA
TTTAGATGCTGAACCTTGATTAAATCGATCAAATACTTGCTATAAATCCA
ttcccaaaacaaaacaatatttgtaataagtatttcatgcccataatgca
attgcaCCTGTTTTGTCAAAAACAGCTTTGAAGGGGCAAACTTTTATTGA
CTTCGTTTTTGACATAtgttaatgtttttctaaatctccatcaaattttt
GGTATGCAATACgaccatgttttgagaaagttATTTTATTGTCCACTAAC
CTTAAATTCAATTGCGTACTAGGtctgaaaaacttgattttttaaaggca
tctttgatgaaattttgaataatttcgaatttttcgagactttgcaatat
tgaaattcttgaaattaggtattttatgaaagtgaATTATATAcaatact
agccggtacccggcgtcgcacgccggttaagctgtagcgcttaacgcact
aaaagtcctttggatgttgaagctggcttaaaaaatgatcagatgaataa
aaagatatcttcaaagtttgactctaaccctcccccggagatctttttct
cgcttcgcttgcattaaatacgccgtccagttttcgacaatttgagaaaa
tgtcatggtaaagaggagtgaaatatagaaatgacaattctttaggANNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNaatacgatcgttaaatacatttgaaa
acatttcaaacaaaaggaAAGAGAAAAGCAGGATCGGGCaaagctgggca
gaaattaaaattactacggctattaatacaTAGATTAGATTAAGTTTTGT
AGCTAAGGAAGAGAGTCTAAAGTGCAACTTTGtaggggtatgtggtttta
agggatATCCACTGgtaatagaaaaattttcaagcagtttttttGAAGAA
TCAAAACTTAGTTTTTACTTTTAAGTCTTCTTTTCCCATTTTAATATCTA
GAAGAAATTCCAGCTCAAATAAACCAAGAGTATAGAGGCTTCAATCGTTT
GTGAAGGAGAAAACgttttaaaataattataaacacAAAGAAACTTTGAA
ACAAATGGTTTCCTTAATATAAAAAGGTGGAGGTAAATTCAAAAAAGTGG
AAGGGGAGAATGGTCGaattttgacaatatttgaGCGTACATAATTGTTG
AATCGTCCcatataaaatatttaaaatccaaAGCCAAGTTTTGATCCAAA
ACTGTTTCTTGATCTTAAACTTCtatcattttaaaaattatgattgCTCT
TGtgtaggaaaataaaaaaagaaatgactGCAGTGATTGCTGGAGATTTC
CAGTCATCAATTAATAATGATGAATCAGATGACTTGCCCTTAGGACAGTC
AGAACGTGCAGTCTACTTGTCAAACCACTCTATCAAGTTAAAGAAAACAC
TTGGATTTTCTCATGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGT
GGTGTCTTTATATCCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGG
AATGGAACTTGTCATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTG
CTTTATGTTATTGTGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAAT
TATGcaaacattttcaatatttatggAGATGCACCAGCTTTCCTGACAGC
TTGGGCAACATGCTTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTT
TAACAATTGGAACATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAG
GGTGAAATACCTGCAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTT
CATTATCAATAGTTCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTT
TATCTGTTATTCAAATCTTGTCAGTTGTTTTTGTGATTGTCATCGGAATA
TGGCAACTGGCTAAAAACAAAGCTGCAAACTTTCATGATATGTTTTCAGG
AACGATCGTTGATAAACACAGCCCGTTGCATATTGGGATTGCACTGTTTG
GTGCATTATGGTCCTATGANCGTCCcatataaaatatttaaaatccaaAG
CCAAGTTTTGATCCAAAACTGTTTCTTGATCTTAAACTTCtatcatttta
aaaattatgattgCTCTTGtgtaggaaaataaaaaaagaaatgactGCAG
TGATTGCTGGAGATTTCCAGTCATCAATTAATAATGATGAATCAGATGAC
TTGCCCTTAGGACAGTCAGAACGTGCAGTCTACTTGTCAAACCACTCTAT
CAAGTTAAAGAAAACACTTGGATTTTCTCATGGCTTTTCACTCATTGTTG
GGCTCATTTTGGGTAGTGGTGTCTTTATATCCCCTGGTTTAGTGGCAAAG
GATACCAGTTCTCCAGGAATGGAACTTGTCATGTGGGCAGCTGCTGGCAT
AATTGCATTACTTGGTGCTTTATGTTATTGTGAGATTGGCTGTATGTTCA
AAATGTCTGGTGGAAATTATGcaaacattttcaatatttatggAGATGCA
CCAGCTTTCCTGACAGCTTGGGCAACATGCTTAGTAATCGATCCTTCTAG
TGTTTCAGCAATTGCTTTAACAATTGGAACATATTTTGTAAAACCCTTCT
ATGCAACAGATGCTGAGGGTGAAATACCTGCAAAATTGATTGCTTTTGGG
CTTATCATCCTCTGCTTCATTATCAATAGTTCCAGTGCCAAAATAACAAA
TGTGATCCAAAGAATTTTATCTGTTATTCAAATCTTGTCAGTTGTTTTTG
TGATTGTCATTGGAATATGGCAACTGGCTAAAAACAAAGCTGCGAACTTT
CATGATATGTTTTCAGGAACGATCGTTGATAAACACAGCCCGTTGCATAT
TGGGATTGCACTGTTTGGTGCATTATGGTCCTATGATGGATGGGCACAGA
TGAGTAATGTTATTGAGGAAATCGACAACGTGGAAAGAAATTTACTTTTG
ATTATAGTCACTGGAAtaccttttgttatattttgCTACATCATGGcaaa
catttcatttttatcaGTATTGACACATCATCAGATGGGCTCTTCAGATG
CTGTAGCAATTGACTTCATTGAAAACGCACTAGGGATCAAAACTTCATAT
CTTATGATGGTGTTAGTTGCATTATCAGCTTTTGGGACATTAAATGGTAC
CTTTTTTGCTTGTCCTCGTTTGACAATGTCTGCTGCACGTGAAGGTCATA
TGCCTTTCATTTTCTCTCTACTTTATAAGAGAAATGAACTACCGNCACGT
GAAGGTCATATGCCTTCCATTTTCTCACTACTTTACAAGAGAAATGAACT
ACCGGTTCCTGCTTCAACCCTTATTCTGGTTATATCATCATTAATGTTGT
TACCTAAAGCAAGCAATCTCAACACCCTGATCTTACTTTTCAGTCAAGCT
CAATGGGTCATTTACACAGCTTCTATCTTTGGTGTGATCATATTGAGGTA
TCGGAGACCAAACCTTGTGAGACCTTTTAAAGTCTTTATTGGTGTGCCAA
TCCTTATCTCATTGATCGGTGTTTTTCTTGTCATTATGCCCTTTTTCAGA
GACTTTTGGTTATCTTTGGCAATGGTGGGCTTTATATTATTAGGAATTCC
TGTCTATCTTGTATGTGTCAAATATGCACCTCGACAGCCTATATGCTGCT
TAAACTTCATGGATGCTTTGAACATTAAAGTTCAAAGTCGCTTCAATTTT
GTACCTTGCTCGAAAGCGTCTTAAATATGTAATAAATATCTAGTAAAGTT
GACGATAGTAAaaaagattttagattttttaacaaaataatcataaaatT
ACTtgaataatatatatttttatatcttttataTCATAACCTTAATATAT
ATTAAAAATACCGAGATTCCTAAAACGATCATTTATGTATTGCAACCACC
AAGAAATAGACTTTCATGAAGCTTTTAAAAGTACTAAAAATTACACAagt
gtattttttaatgtttccaaCGCCTGGGGGCTGGGCACTCAATTTCTAAA
TGACTGCATGTGCCGCCATTTCTAAACGACGCAATGTGCCgctaaaaaat
tgattttcaaaatcgGGCCGTTGCAGTGCAGCTCTTGAGCAGTGAAAatg
tacccttacagtgcatttttccgAACTTTTtttacccttacagtgtagtt
tgaatTCGtgtcttattttgctgaagctaTGCCCGAAAATAACCCTGAGA
CGTCACCTGACACGATGTGTgcaaaagtaataaaaaatgtgaaataggtt
taagtcaaaattttaaagatacaTATCTTTACTGTCAGACTTACATTTCA
AGGGTCTTGAAAAACCtatccttaagggcggcacatgccgtggaTCGAAA
GTTATGAGTGCCCCTCCCCCCGGGGTTCCAACGTAAACAAAGCTTTCATC
AAGAATCTTTGGCATACGGAAGATTTACTTCTATCAAGGaactttaataa
tttttatttaagtTTCTTGGTTGGGTCTATGAATGGCGGGGGATACTACA
GATAATTCATTTGGTTCATACATATACACTTTATTTAGCTTTTTTAAACG
TATTTACAACCTTGGAAATTTTATATAATAAAAATTGATTGACATTAAAT
ATATACACTTTGATTTTAACAAACATAGGTTGGGTGTATTGTGCAAGAGT
GCCTACTATTTTAATAAGTTTTGTCAAAACACGAGGTCTGATtgccaaaa
caaagagaaacaTGAAATATAACACTTTTTGTAATTTCATCCAGATTACA
ATAAGCCCGATAACCAAAGTGCAATACGCGAGAGAAAGTTACACAATTTT
AATCGCTAGCTAGATAGGAATTTTCTCATTTGCAGTGCAATATGTGGCGA
CTTTTTTATAACAATGATactcaaaaattccaaaatataataacaattta
agaacaatgctgagcctgaaattgtgaAGTTTTAAGCAAATTTATGGTCA
GAGTATTAAAATTAGGGTCGGATCATGTTATATCCAAAAATACAGTTTGA
TGCTCGAAGTGCTATAAAAAAATCAGTAGAGCCTCAATAAGATTTACTAT
ATGAAAAAATAGTGAATCTCCCTGAATAAAATAGTGGAATTTGGTTTGCT
TGCATTTCAAAGTCTGTCTTACAACGGACATAGGATGAAGTGGCATGCTT
TCACCTCGTGTTAAAGTACATATTCGATTTCAATCTATTTTCAGAAATAT
ATTATTGTATTTACTGTATCGTTGCTTGTAAAATGCTAAGCTCTTAAatg
aaatattgagaaaaaatgCCTTGTTTTAAACAATGCTCCCAATTATTTTA
ATACCTCTTTCGCTTCCATTGAAATCTTgaataaaacatttttagaaaaa
ttcaaaatgacctGTAACATCAGGATCACATGTGACCTTCAATATTTTGT
AGAATCTTGTCTTTTCTTCGAAGAAGATTTTGGTACAGGGTCGAATacat
catttttcttttcttaacaGACAACTTCTCCCCTGAAAAGACACTGTCTC
TTTCCCTCTTTCTGAACTAATAGCCCAATTCCTGCTAATTTTTATCCTTG
ATTACAGTATGTCCGCTAATAAGTAGAGGAGAGTGCACCTATTTAGTTAA
CTAGTTGCGACAGTTGCGAAAAAGAACtctaaaatgtattttttttattt
tttcagtatGTTATGGAAACTCATATAGAAAGCCATGGCAACAGCAATGC
TGGTACCAAACGTAAACAAGGCAAACTCACTGACCAATATCCAGTTGTCA
AGAGGAACCGTTTTAATGGAATGACTGAAGAAGAAGTCATGNCACTGACC
AATATCCAGTTGTCAAGAGGAACCGATTTAATGGAATGACTGAAGAAGAA
GTCATGAAGCGGGGACTACCGGATTATTTACGAGATTCTCTAGATATTGT
GTTCGTCGGAATCAACCCTGGGTTAGCGGCCGCATACACTGGGAACTACT
ACACTGGCCCTGGTAATCATTTTTGGAAATGTCTGCACTTGTCTGGCTTT
ATAGAACAACCTATGACTGCTAAAGATGATACGCGATTATTTCGAGATTA
TAATATCGGATTTACAAACATGGTAGTACGAACTACGAAAGGGAGCAACG
ATTTATCGAAGAAGGAGCTTGAAGAGGGCGGTAAAATTCTAACCGTCAAA
ATGCAACAGTATCAACCGAAAATTGTCGTCTTTAACGGGAAAGTCAGTTA
TCaagttttttcaaagaaaaagaaattccatTTTGGTTTACAAGAGGAGA
GTGTTGAAGGGACCAACACACGTATTTGGGTGATGCCTTCGTCTTCTGCT
CGTTGCGCCCAACTTCCTAGGGCGTCTGACAAAGCGCCCTTTTTTAAAGC
TTTGAAACGATGTCGCAATTATTTGAAAGGTGAATCTAATAATGTGGTGG
ATGAACAGAAAGAATTCGTTTTCGCTGATTTGACATTAAAAGGATTTCCA
AGGAAATCTACTGTGACATCAACGTAGGGATAACAATATCTTTTATTTAT
TATATCAGTAGAGTTTTATTCTACTCATAAACCTAATGAGTATGCTTAGA
TAGGTTCAGgatatatattttaaattttaaagaaaagccTTTGATTGTTA
AAAGAAATTTGGATTGTCATGGGTAAGTACGGTAGTGTTTGTTATCCTCT
GGAATCAATTTAGTTGAAagttatttgaaaaataaatgaaatgacTTCCT
GCGGCGAAGAATTTAAACAAACTACAGCTGTTTTAAATGCCCAAACAAAG
TCCACTTTTAGTTGAATTACTAGGTATTATACTGAAATTAATTTATCCCT
AATttataatattatattttatcttttatttacGAATCCTAATTTAtact
ttaatgaaaatgtcaatttttaaattatcattttttagcGATAATTGGCA
ATATTGGCTTTTATGAAATGAATCGATTTTGAATCTTTCTTTGGAACATG
AATGTTGCTTTTAAGATATGATTGAATTTGAATCATTAGTGCCCGTACTA
CTTCCGAATCGAGGTCCTATTCCTGCAATGAAATACA Coding sequence (CDS) from alignment at sc0000456:238608..248944+ >TCONS_00023578 ID=TCONS_00023578|Name=TCONS_00023578|organism=Clytia hemisphaerica|type=CDS|length=642bp|location=Sequence derived from alignment at sc0000456:238608..248944+ (Clytia hemisphaerica)
ATGACTGAAGAAGAAGTCATGAAGCGGGGACTACCGGATTATTTACGAGA
TTCTCTAGATATTGTGTTCGTCGGAATCAACCCTGGGTTAGCGGCCGCAT
ACACTGGGAACTACTACACTGGCCCTGGTAATCATTTTTGGAAATGTCTG
CACTTGTCTGGCTTTATAGAACAACCTATGACTGCTAAAGATGATACGCG
ATTATTTCGAGATTATAATATCGGATTTACAAACATGGTAGTACGAACTA
CGAAAGGGAGCAACGATTTATCGAAGAAGGAGCTTGAAGAGGGCGGTAAA
ATTCTAACCGTCAAAATGCAACAGTATCAACCGAAAATTGTCGTCTTTAA
CGGGAAAGTCAGTTATCaagttttttcaaagaaaaagaaattccatTTTG
GTTTACAAGAGGAGAGTGTTGAAGGGACCAACACACGTATTTGGGTGATG
CCTTCGTCTTCTGCTCGTTGCGCCCAACTTCCTAGGGCGTCTGACAAAGC
GCCCTTTTTTAAAGCTTTGAAACGATGTCGCAATTATTTGAAAGGTGAAT
CTAATAATGTGGTGGATGAACAGAAAGAATTCGTTTTCGCTGATTTGACA
TTAAAAGGATTTCCAAGGAAATCTACTGTGACATCAACGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023578-exon-sc0000456-1491911889:238608..239212 | TCONS_00023578-exon-sc0000456-1491911889:238608..239212 | Clytia hemisphaerica | exon |
| TCONS_00023578-exon-sc0000456-1510915933:238608..239212 | TCONS_00023578-exon-sc0000456-1510915933:238608..239212 | Clytia hemisphaerica | exon |
| TCONS_00023578-exon-sc0000456-1575043694:238608..239212 | TCONS_00023578-exon-sc0000456-1575043694:238608..239212 | Clytia hemisphaerica | exon |
| TCONS_00023578-exon-sc0000456-1491911889:247564..248944 | TCONS_00023578-exon-sc0000456-1491911889:247564..248944 | Clytia hemisphaerica | exon |
| TCONS_00023578-exon-sc0000456-1510915933:247564..248944 | TCONS_00023578-exon-sc0000456-1510915933:247564..248944 | Clytia hemisphaerica | exon |
| TCONS_00023578-exon-sc0000456-1575043694:247564..248944 | TCONS_00023578-exon-sc0000456-1575043694:247564..248944 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000456 | supercontig | sc0000456:238608..248944 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0019104 | DNA N-glycosylase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006281 | DNA repair |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006281 |
DNA repair |
| molecular_function |
GO:0019104 |
DNA N-glycosylase activity |
Blast
BLAST of TCONS_00023578 vs. Swiss-Prot (Human)
Match: TDG (G/T mismatch-specific thymine DNA glycosylase OS=Homo sapiens GN=TDG PE=1 SV=2) HSP 1 Score: 227.639 bits (579), Expect = 7.702e-67 Identity = 116/222 (52.25%), Postives = 148/222 (66.67%), Query Frame = 2
Query: 743 TDQYPVVKR-NRFNGMTEEEVMKRGLPDYLRDSLDIVFVGINPGLAAAYTGNYYTGPGNHFWKCLHLSGFIEQPMTAKDDTRLFRDYNIGFTNMVVRTTKGSNDLSKKELEEGGKILTVKMQQYQPKIVVFNGKVSYQVFSKK------KKFHFGLQEESVEGTNTRIWVMPSSSARCAQLPRASDKAPFFKALKRCRNYLKGESNNVVDEQKEFVFADLTL 1387
TD + V ++ +RFNG++E E++ + LPD L +LDIV +GINPGL AAY G++Y GPGNHFWKCL +SG E + DD L Y IGFTNMV RTT GS DLS KE EGG+IL K+Q+YQP+I VFNGK Y++FSK+ K FGLQ + T T +VMPSSSARCAQ PRA DK ++ LK R+ LKG N+ ++ ++ F DL L
Sbjct: 99 TDTFKVKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCLFMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQPRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQDKVHYYIKLKDLRDQLKGIERNMDVQEVQYTF-DLQL 319
The following BLAST results are available for this feature:
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