TCONS_00023579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023579
Unique NameTCONS_00023579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1714

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023579 ID=TCONS_00023579|Name=TCONS_00023579|organism=Clytia hemisphaerica|type=transcript|length=1714bp
taggaaaataaaaaaagaaatgactGCAGTGATTGCTGGAGATTTCCAGT
CATCAATTAATAATGATGAATCAGATGACTTGCCCTTAGGACAGTCAGAA
CGTGCAGTCTACTTGTCAAACCACTCTATCAAGTTAAAGAAAACACTTGG
ATTTTCTCATGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGTGGTG
TCTTTATATCCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGGAATG
GAACTTGTCATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTGCTTT
ATGTTATTGTGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAATTATG
caaacattttcaatatttatggAGATGCACCAGCTTTCCTGACAGCTTGG
GCAACATGCTTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTTTAAC
AATTGGAACATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAGGGTG
AAATACCTGCAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTTCATT
ATCAATAGTTCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTTTATC
TGTTATTCAAATCTTGTCAGTTGTTTTTGTGATTGTCATTGGAATATGGC
AACTGGCTAAAAACAAAGCTGCGAACTTTCATGATATGTTTTCAGGAACG
ATCGTTGATAAACACAGCCCGTTGCATATTGGGATTGCACTGTTTGGTGC
ATTATGGTCCTATGATGGATGGGCACAGATGAGTAATGTTATTGAGGAAA
TCGACAACGTGGAAAGAAATTTACTTTTGATTATAGTCACTGGAAtacct
tttgttatattttgCTACATCATGGcaaacatttcatttttatcaGTATT
GACACATCATCAGATGGGCTCTTCAGATGCTGTAGCAATTGACTTCATTG
AAAACGCACTAGGGATCAAAACTTCATATCTTATGATGGTGTTAGTTGCA
TTATCAGCTTTTGGGACATTAAATGGTACCTTTTTTGCTTGTCCTCGTTT
GACAATGTCTGCTGCACGTGAAGGTCATATGCCTTCCATTTTCTCACTAC
TTTACAAGAGAAATGAACTACCGGTTCCTGCTTCAACCCTTATTCTGGTT
ATATCATCATTAATGTTGTTACCTAAAGCAAGCAATCTCAACACCCTGAT
CTTACTTTTCAGTCAAGCTCAATGGGTCATTTACACAGCTTCTATCTTTG
GTGTGATCATATTGAGGTATCGGAGACCAAACCTTGTGAGACCTTTTAAA
GTCTTTATTGGTGTGCCAATCCTTATCTCATTGATCGGTGTTTTTCTTGT
CATTATGCCCTTTTTCAGAGACTTTTGGTTATCTTTGGCAATGGTGGGCT
TTATATTATTAGGAATTCCTGTCTATCTTGTATGTGTCAAATATGCACCT
CGACAGCCTATATGCTGCTTAAACTTCATGGATGCTTTGAACATTAAAGT
TCAAAGTCGCTTCAATTTTGTACCTTGCTCGAAAGCGTCTTAAATATGTA
ATAAATATCTAGTAAAGTTGACGATAGTAAaaaagattttagatttttta
acaaaataatcataaaatTACTtgaataatatatatttttatatctttta
taTCATAACCTTAATATATATTAAAAATACCGAGATTCCTAAAACGATCA
TTTATGTATTGCAA
Run BLAST on NCBI

protein sequence of TCONS_00023579-protein

>TCONS_00023579-protein ID=TCONS_00023579-protein|Name=TCONS_00023579-protein|organism=Clytia hemisphaerica|type=polypeptide|length=513bp
RKIKKEMTAVIAGDFQSSINNDESDDLPLGQSERAVYLSNHSIKLKKTLG
FSHGFSLIVGLILGSGVFISPGLVAKDTSSPGMELVMWAAAGIIALLGAL
CYCEIGCMFKMSGGNYANIFNIYGDAPAFLTAWATCLVIDPSSVSAIALT
IGTYFVKPFYATDAEGEIPAKLIAFGLIILCFIINSSSAKITNVIQRILS
VIQILSVVFVIVIGIWQLAKNKAANFHDMFSGTIVDKHSPLHIGIALFGA
LWSYDGWAQMSNVIEEIDNVERNLLLIIVTGIPFVIFCYIMANISFLSVL
THHQMGSSDAVAIDFIENALGIKTSYLMMVLVALSAFGTLNGTFFACPRL
TMSAAREGHMPSIFSLLYKRNELPVPASTLILVISSLMLLPKASNLNTLI
LLFSQAQWVIYTASIFGVIILRYRRPNLVRPFKVFIGVPILISLIGVFLV
IMPFFRDFWLSLAMVGFILLGIPVYLVCVKYAPRQPICCLNFMDALNIKV
QSRFNFVPCSKAS
Run BLAST on NCBI

transcript from alignment at sc0000456:244029..245802+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023579 ID=TCONS_00023579|Name=TCONS_00023579|organism=Clytia hemisphaerica|type=transcript|length=1774bp|location=Sequence derived from alignment at sc0000456:244029..245802+ (Clytia hemisphaerica)
taggaaaataaaaaaagaaatgactGCAGTGATTGCTGGAGATTTCCAGT
CATCAATTAATAATGATGAATCAGATGACTTGCCCTTAGGACAGTCAGAA
CGTGCAGTCTACTTGTCAAACCACTCTATCAAGTTAAAGAAAACACTTGG
ATTTTCTCATGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGTGGTG
TCTTTATATCCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGGAATG
GAACTTGTCATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTGCTTT
ATGTTATTGTGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAATTATG
caaacattttcaatatttatggAGATGCACCAGCTTTCCTGACAGCTTGG
GCAACATGCTTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTTTAAC
AATTGGAACATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAGGGTG
AAATACCTGCAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTTCATT
ATCAATAGTTCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTTTATC
TGTTATTCAAATCTTGTCAGTTGTTTTTGTGATTGTCATTGGAATATGGC
AACTGGCTAAAAACAAAGCTGCGAACTTTCATGATATGTTTTCAGGAACG
ATCGTTGATAAACACAGCCCGTTGCATATTGGGATTGCACTGTTTGGTGC
ATTATGGTCCTATGATGGATGGGCACAGATGAGTAATGTTATTGAGGAAA
TCGACAACGTGGAAAGAAATTTACTTTTGATTATAGTCACTGGAAtacct
tttgttatattttgCTACATCATGGcaaacatttcatttttatcaGTATT
GACACATCATCAGATGGGCTCTTCAGATGCTGTAGCAATTGACTTCATTG
AAAACGCACTAGGGATCAAAACTTCATATCTTATGATGGTGTTAGTTGCA
TTATCAGCTTTTGGGACATTAAATGGTACCTTTTTTGCTTGTCCTCGTTT
GACAATGTCTGCTGCACGTGAAGGTCATATGCCTTTCATTTTCTCTCTAC
TTTATAAGAGAAATGAACTACCGNCACGTGAAGGTCATATGCCTTCCATT
TTCTCACTACTTTACAAGAGAAATGAACTACCGGTTCCTGCTTCAACCCT
TATTCTGGTTATATCATCATTAATGTTGTTACCTAAAGCAAGCAATCTCA
ACACCCTGATCTTACTTTTCAGTCAAGCTCAATGGGTCATTTACACAGCT
TCTATCTTTGGTGTGATCATATTGAGGTATCGGAGACCAAACCTTGTGAG
ACCTTTTAAAGTCTTTATTGGTGTGCCAATCCTTATCTCATTGATCGGTG
TTTTTCTTGTCATTATGCCCTTTTTCAGAGACTTTTGGTTATCTTTGGCA
ATGGTGGGCTTTATATTATTAGGAATTCCTGTCTATCTTGTATGTGTCAA
ATATGCACCTCGACAGCCTATATGCTGCTTAAACTTCATGGATGCTTTGA
ACATTAAAGTTCAAAGTCGCTTCAATTTTGTACCTTGCTCGAAAGCGTCT
TAAATATGTAATAAATATCTAGTAAAGTTGACGATAGTAAaaaagatttt
agattttttaacaaaataatcataaaatTACTtgaataatatatattttt
atatcttttataTCATAACCTTAATATATATTAAAAATACCGAGATTCCT
AAAACGATCATTTATGTATTGCAA

Coding sequence (CDS) from alignment at sc0000456:244029..245802+

>TCONS_00023579 ID=TCONS_00023579|Name=TCONS_00023579|organism=Clytia hemisphaerica|type=CDS|length=3084bp|location=Sequence derived from alignment at sc0000456:244029..245802+ (Clytia hemisphaerica)
aggaaaataaaaaaagaaatgactGCAGTGATTGCTGGAGATTTCCAGTC
ATCAATTAATAATGATGAATCAGATGACTTGCCCTTAGGACAGTCAGAAC
GTGCAGTCTACTTGTCAAACCACTCTATCAAGTTAAAGAAAACACTTGGA
TTTTCTCATGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGTGGTGT
CTTTATATCCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGGAATGG
AACTTGTCATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTGCTTTA
TGTTATTGTGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAATTATGc
aaacattttcaatatttatggAGATGCACCAGCTTTCCTGACAGCTTGGG
CAACATGCTTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTTTAACA
ATTGGAACATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAGGGTGA
AATACCTGCAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTTCATTA
TCAATAGTTCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTTTATCT
GTTATTCAAATCTTGTCAGTTGTTTTTGTGATTGTCATTGGAATATGGCA
ACTGGCTAAAAACAAAGCTGCGAACTTTCATGATATGTTTTCAGGAACGA
TCGTTGATAAACACAGCCCGTTGCATATTGGGATTGCACTGTTTGGTGCA
TTATGGTCCTATGATGGATGGGCACAGATGAGTAATGTTATTGAGGAAAT
CGACAACGTGGAAAGAAATTTACTTTTGATTATAGTCACTGGAAtacctt
ttgttatattttgCTACATCATGGcaaacatttcatttttatcaGTATTG
ACACATCATCAGATGGGCTCTTCAGATGCTGTAGCAATTGACTTCATTGA
AAACGCACTAGGGATCAAAACTTCATATCTTATGATGGTGTTAGTTGCAT
TATCAGCTTTTGGGACATTAAATGGTACCTTTTTTGCTTGTCCTCGTTTG
ACAATGTCTGCTGCACGTGAAGGTCATATGCCTTCCATTTTCTCACTACT
TTACAAGAGAAATGAACTACCGGTTCCTGCTTCAACCCTTATTCTGGTTA
TATCATCATTAATGTTGTTACCTAAAGCAAGCAATCTCAACACCCTGATC
TTACTTTTCAGTCAAGCTCAATGGGTCATTTACACAGCTTCTATCTTTGG
TGTGATCATATTGAGGTATCGGAGACCAAACCTTGTGAGACCTTTTAAAG
TCTTTATTGGTGTGCCAATCCTTATCTCATTGATCGGTGTTTTTCTTGTC
ATTATGCCCTTTTTCAGAGACTTTTGGTTATCTTTGGCAATGGTGGGCTT
TATATTATTAGGAATTCCTGTCTATCTTGTATGTGTCAAATATGCACCTC
GACAGCCTATATGCTGCTTAAACTTCATGGATGCTTTGAACATTAAAGTT
CAAAGTCGCTTCAATTTTGTACCTTGCTCGAAAGCGTCTTAAaggaaaat
aaaaaaagaaatgactGCAGTGATTGCTGGAGATTTCCAGTCATCAATTA
ATAATGATGAATCAGATGACTTGCCCTTAGGACAGTCAGAACGTGCAGTC
TACTTGTCAAACCACTCTATCAAGTTAAAGAAAACACTTGGATTTTCTCA
TGGCTTTTCACTCATTGTTGGGCTCATTTTGGGTAGTGGTGTCTTTATAT
CCCCTGGTTTAGTGGCAAAGGATACCAGTTCTCCAGGAATGGAACTTGTC
ATGTGGGCAGCTGCTGGCATAATTGCATTACTTGGTGCTTTATGTTATTG
TGAGATTGGCTGTATGTTCAAAATGTCTGGTGGAAATTATGcaaacattt
tcaatatttatggAGATGCACCAGCTTTCCTGACAGCTTGGGCAACATGC
TTAGTAATCGATCCTTCTAGTGTTTCAGCAATTGCTTTAACAATTGGAAC
ATATTTTGTAAAACCCTTCTATGCAACAGATGCTGAGGGTGAAATACCTG
CAAAATTGATTGCTTTTGGGCTTATCATCCTCTGCTTCATTATCAATAGT
TCCAGTGCCAAAATAACAAATGTGATCCAAAGAATTTTATCTGTTATTCA
AATCTTGTCAGTTGTTTTTGTGATTGTCATTGGAATATGGCAACTGGCTA
AAAACAAAGCTGCGAACTTTCATGATATGTTTTCAGGAACGATCGTTGAT
AAACACAGCCCGTTGCATATTGGGATTGCACTGTTTGGTGCATTATGGTC
CTATGATGGATGGGCACAGATGAGTAATGTTATTGAGGAAATCGACAACG
TGGAAAGAAATTTACTTTTGATTATAGTCACTGGAAtaccttttgttata
ttttgCTACATCATGGcaaacatttcatttttatcaGTATTGACACATCA
TCAGATGGGCTCTTCAGATGCTGTAGCAATTGACTTCATTGAAAACGCAC
TAGGGATCAAAACTTCATATCTTATGATGGTGTTAGTTGCATTATCAGCT
TTTGGGACATTAAATGGTACCTTTTTTGCTTGTCCTCGTTTGACAATGTC
TGCTGCACGTGAAGGTCATATGCCTTCCATTTTCTCACTACTTTACAAGA
GAAATGAACTACCGGTTCCTGCTTCAACCCTTATTCTGGTTATATCATCA
TTAATGTTGTTACCTAAAGCAAGCAATCTCAACACCCTGATCTTACTTTT
CAGTCAAGCTCAATGGGTCATTTACACAGCTTCTATCTTTGGTGTGATCA
TATTGAGGTATCGGAGACCAAACCTTGTGAGACCTTTTAAAGTCTTTATT
GGTGTGCCAATCCTTATCTCATTGATCGGTGTTTTTCTTGTCATTATGCC
CTTTTTCAGAGACTTTTGGTTATCTTTGGCAATGGTGGGCTTTATATTAT
TAGGAATTCCTGTCTATCTTGTATGTGTCAAATATGCACCTCGACAGCCT
ATATGCTGCTTAAACTTCATGGATGCTTTGAACATTAAAGTTCAAAGTCG
CTTCAATTTTGTACCTTGCTCGAAAGCGTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013249XLOC_013249Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023579-proteinTCONS_00023579-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023579-exon-sc0000456-1491911889:244029..245101TCONS_00023579-exon-sc0000456-1491911889:244029..245101Clytia hemisphaericaexon
TCONS_00023579-exon-sc0000456-1510915933:244029..245101TCONS_00023579-exon-sc0000456-1510915933:244029..245101Clytia hemisphaericaexon
TCONS_00023579-exon-sc0000456-1575043694:244029..245101TCONS_00023579-exon-sc0000456-1575043694:244029..245101Clytia hemisphaericaexon
TCONS_00023579-exon-sc0000456-1491911889:245162..245802TCONS_00023579-exon-sc0000456-1491911889:245162..245802Clytia hemisphaericaexon
TCONS_00023579-exon-sc0000456-1510915933:245162..245802TCONS_00023579-exon-sc0000456-1510915933:245162..245802Clytia hemisphaericaexon
TCONS_00023579-exon-sc0000456-1575043694:245162..245802TCONS_00023579-exon-sc0000456-1575043694:245162..245802Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:244029..245802 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.44169	2.89644	8.03394	10.2623	8.83758	7.15942	7.6374	7.77425	5.52239	9.25173	7.18874	3.61092	3.26099	2.40967	3.5472	5.20008	3.3977	3.35556	2.53095	2.75334	2.96295	3.10168	9.56813	8.25651	1.56919	1.37788	1.90709	1.17289	6.6981	5.51809
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002293AA/rel_permease1
Vocabulary: Molecular Function
TermDefinition
GO:0015171amino acid transmembrane transporter activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0003333amino acid transmembrane transport
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0003333 amino acid transmembrane transport
cellular_component GO:0016020 membrane
molecular_function GO:0015171 amino acid transmembrane transporter activity
Blast
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BLAST of TCONS_00023579 vs. Swiss-Prot (Human)
Match: BAT1 (b(0,+)-type amino acid transporter 1 OS=Homo sapiens GN=SLC7A9 PE=1 SV=1)

HSP 1 Score: 279.641 bits (714), Expect = 2.465e-86
Identity = 166/442 (37.56%), Postives = 255/442 (57.69%), Query Frame = 2 
Query:  122 HSIKLKKTLGFSHGFSLIVGLILGSGVFISPGLVAKDTSSPGMELVMWXXXXXXXXXXXXCYCEIGCMFKMSGGNYANIFNIYGDAPAFLTAWATCLVIDPSSVSAIALTIGTYFVKPFYATDAEGEIPAKLIAFGLIILCFIINSSSAKITNVIQRILSVIQILSVVFVIVIGIWQLAKNKAANFHDMFSGTIVDKHSPLHIGIALFGALWSYDGWAQMSNVIEEIDNVERNLLLIIVTGIPFVIFCYIMANISFLSVLTHHQMGSSDAVAIDFIENALGIKTSYLMMVLVALSAFGTLNGTFFACPRLTMSAAREGHMPSIFSLLYKRNELPVPASTLILVISSLMLLPKASNLNTLILLFSQAQWVIYTASIFGVIILRYRRPNLVRPFKVFIGVPILISLIGVFLVIMPFF-RDFWLSLAMVGFILLGIPVYLVCVKY 1444
             +  L+K LG   G S+IVG I+GSG+F+SP  V  +T + G  L++WAA G++A LGALC+ E+G M   SGG Y  +   YG  PA+L +WA+ +VI P+S + I L+   Y   PFY      +I  K +A   I+    +NS S ++ + +Q I +  +++ V  +I+ G+  LA+    NF + F G  +   +   I +A +  LW+YDGW Q++ + EE+ N  RNL L I+ GIP V  CYI+ N+S+ +V+T  ++  S AVA+ F +  L    S+++ + VA S  G  NGT F   RL   A REGHM  + S +  R   P PA     +I+++ ++P   ++N+L+  FS A W+ Y  +I G+I++R+ R  L RP KV + +P+L++LI VFLV+ P   +  W  L  V FIL G+  Y + V Y
Sbjct:   22 KTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLGALCFAELGTMITKSGGEYPYLMEAYGPIPAYLFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIVVKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLVIVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGA---ISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVL-YPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIP--GDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHY 457
The following BLAST results are available for this feature:
BLAST of TCONS_00023579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
BAT12.465e-8637.56b(0,+)-type amino acid transporter 1 OS=Homo sapie... [more]
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