TCONS_00023586 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023586
Unique NameTCONS_00023586
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1669

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023586 ID=TCONS_00023586|Name=TCONS_00023586|organism=Clytia hemisphaerica|type=transcript|length=1669bp
AAACTATAAAACAAGTTGCTTGCTTTGATTAGTTTGACTCTCacaatttt
gctaaaaaaaaaattctttatttttctatacCTCTTCTTGTCTCTAGAAC
TAATAATGAATACTTATAATGGACGATTGATATTGAAAGTTAAAAAGAGA
AGAAGCTCTTTGCCTTTACCTGGCAAGAAGGTTTgtgctgaaaaagaaaa
tcaatgtgTCACATCTCAACCAAAATCATTAAAGCGACCAAATCCATTTT
CAAAAACCAAGACAGATTGTGAATCCAAAGATAAATGCAAGAAATTCATC
AATTATGATACCAAAGATATTCATCAAAGCAATTTATTAACGGATTTATC
AAATCTATCGCAGGACAAGAGAGAACTTCGATTGAGTGACTCCAAAGAAC
CATCCTATGAACTTAAAGATGttataaaggagaaaaaagacGAAGTCACT
GAAGATGCAAATAGTGAAAATGTGATCTACGAAAGTTCACAAGTACCTTT
TAACTGGATGTTGAaacagaaattgaaattcttttctAAGAAACCTTTTC
TTTATGACATTAAATCATCACATGAACCAAAAGCTATTCATAACTTTACA
AGTAGTTCCGACCAACCTGATGAACCATTACTGAATCAACATTTGTACAA
TTGGATACATCCATCTTTACCTGGCATACCAAACTACCCTTTGAAAACAA
CAGTGCTGGGAGGCTCGTCAAAAGAAGAGAAAAACTGTATAAACCTTTTT
GCAAATAATATGGAACTTCGTGATATTATAATGAAGGAATGGAGAAAGAG
TTTTCAATCATTATATAACATGTTAAAGACATCATATTGTCCTTACTTTT
ATATTTGTGGTCATCAATTCTCAGTGTTGTTCAAATCATCTAGTGTTGGA
CATGATGGAATGTGTGCAGTGCTAGGACCAACCACTAAAGGATTGAGAGA
TTTGCTTTCTCAAGAAGgtttgaatttcgattttattTACACACGTGACG
AAGAAAGTGTGGATGAAATCGAATATGGATTTGAAGATGAAgccaaacaa
aacaaagaatcaTCAGATAAAGCCCCATCTTCACTAAACACAAGTTGTGA
TGAAGATTTCTTTGATAGTATTGGGTTGAGTCAAAAAGAACATTTCCCTC
AGATGGAGCAACAACAACGTCGAGCTTTGCGTTCCAAATTGAATTCACTT
GACAGTCGACCTGAGTCAACAGTACGAATTAAGAATTGTAATGGTTTATT
CAACTTCCTCTTAAATGCAAATTTCCTGTGTGCAGCATCTGGACCTATGA
CTGGAGTTCCGCCAACTCTGTTGTCGCCAGAGCCTTTTGAAAGTGCCACA
CTGAACAAATTGAAAGCTAACATtccaccaaaacaaaccaagaAAGTCAA
CAGTAATACGGTATGTGATGTTTTGACATTGAGAGAccattttttgctat
ttttagtttttagcaCTGTTTAAAGCACAAATTTTGGTCTTGGTCAGGTG
AAAAAGAGACATTACCGAATCCGGTCTAATTTGTTTTGTAAAGTCCATCT
TTCCCCTGAGAAGGTAATTTGTTAGATACACAATAGGTTGTAAATTAGAT
TTTCTAGTTCTCCTTTTTGTATtctcaatttcaaaattctttgagCGAAG
TACTAACTAAAAAGTTTAC
Run BLAST on NCBI

protein sequence of TCONS_00023586-protein

>TCONS_00023586-protein ID=TCONS_00023586-protein|Name=TCONS_00023586-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
MNTYNGRLILKVKKRRSSLPLPGKKVCAEKENQCVTSQPKSLKRPNPFSK
TKTDCESKDKCKKFINYDTKDIHQSNLLTDLSNLSQDKRELRLSDSKEPS
YELKDVIKEKKDEVTEDANSENVIYESSQVPFNWMLKQKLKFFSKKPFLY
DIKSSHEPKAIHNFTSSSDQPDEPLLNQHLYNWIHPSLPGIPNYPLKTTV
LGGSSKEEKNCINLFANNMELRDIIMKEWRKSFQSLYNMLKTSYCPYFYI
CGHQFSVLFKSSSVGHDGMCAVLGPTTKGLRDLLSQEGLNFDFIYTRDEE
SVDEIEYGFEDEAKQNKESSDKAPSSLNTSCDEDFFDSIGLSQKEHFPQM
EQQQRRALRSKLNSLDSRPESTVRIKNCNGLFNFLLNANFLCAASGPMTG
VPPTLLSPEPFESATLNKLKANIPPKQTKKVNSNTVCDVLTLRDHFLLFL
VFSTV
Run BLAST on NCBI

transcript from alignment at sc0000456:129203..131250-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023586 ID=TCONS_00023586|Name=TCONS_00023586|organism=Clytia hemisphaerica|type=transcript|length=2048bp|location=Sequence derived from alignment at sc0000456:129203..131250- (Clytia hemisphaerica)
AAACTATAAAACAAGTTGCTTGCTTTGATTAGTTTGACTCTCACAATTTT
GCTAAAAAAAAAATTCTTTATTTTTCTATACCTCTTCTTGTCTCTAGAAC
TAATAATGAATACTTATAATGGACGATTGATATTGAAAGTTAAAAAGAGA
AGAAGCTCTTTGCCTTTACCTGGCAAGAAGGTTTGTGCTGAAAAAGAAAA
TCAATGTGTCACATCTCAACCAAAATCATTAAAGCGACCAAATCCATTTT
CAAAAACCAAGACAGATTGTGAATCCAAAGATAAATGCAAGAAATTCATC
AATTATGATACCAAAGATATTCATCAAAGCAATTTATTAACGGATTTATC
AAATCTATCGCAGGACAAGAGAGAACTTCGATTGAGTGACTCCAAAGAAC
CATCCTATGAACTTAAAGATGTTATAAAGGAGAAAAAAGACGAAGTCACT
GAAGATGCAAATAGTGAAAATGTGATCTACGAAAGTTCACAAGTACCTTT
TAACTGGATGTTGAAACAGAAATTGAAATTCTTTTCTAAGAAACCTTTTC
TTTATGACATTAAATCATCACATGAACCAAAAGCTATTCATAACTTTACA
AGTAGTTCCGACCAACCTGATGAACCATTACTGAATCAACATTTGTACAA
TTGGATACATCCATCTTTACCTGGCATACCAAACTACCCTTTGAAAACAA
CAGTGCTGGGAGGCTCGTCAAAAGAAGAGAAAAACTGTATAAACCTTTTT
GCAAATAATATGGAACTTCGTGATATTATAATGAAGGAATGGAGAAAGAG
TTTTCAATCATTATATAACATGTTAAAGACATCATATTGTCCTTACTTTT
ATATTTGTGGTCATCAATTCTCAGTGTTGTTCAAATCATCTAGTGTTGGA
CATGATGGAATGTGTGCAGTGCTAGGACCAACCACTAAAGGATTGAGAGA
TTTGCTTTCTCAAGAAGGTTTGTCTAAATTGCTTATTTTTGGAGGATTTC
GACGTGATTGTAGACTGATGCTGATAAATTTCAGCTTGTAGGTCCCTTTT
TTAATCTGGAGGGGTTGTAACCATGCCCTCTAGCTCTACGTATTTTCGAG
GAGGTTACTTGTATTCCAGACGTTTTCTCCAACTTAAAAATCAAGCTATT
TTTGATAAGTTTCATTCGCAATTTTAGAGCAAAATAAGGGAGTCCTCTTT
TTACAGCTGAAAATACTTTAAAAATTTGATAAACGGGGTTGGAAACTATC
CGAAAATTGAGGGGGGAGTTTATAAGAACATTAGTGAGAGTATCTATTCA
AATTTGAAAACCTTTGTTTTTACGTTTCAAATTCTCCATCTCATAGGTTT
GAATTTCGATTTTATTTACACACGTGACGAAGAAAGTGTGGATGAAATCG
AATATGGATTTGAAGATGAAGCCAAACAAAACAAAGAATCATCAGATAAA
GCCCCATCTTCACTAAACACAAGTTGTGATGAAGATTTCTTTGATAGTAT
TGGGTTGAGTCAAAAAGAACATTTCCCTCAGATGGAGCAACAACAACGTC
GAGCTTTGCGTTCCAAATTGAATTCACTTGACAGTCGACCTGAGTCAACA
GTACGAATTAAGAATTGTAATGGTTTATTCAACTTCCTCTTAAATGCAAA
TTTCCTGTGTGCAGCATCTGGACCTATGACTGGAGTTCCGCCAACTCTGT
TGTCGCCAGAGCCTTTTGAAAGTGCCACACTGAACAAATTGAAAGCTAAC
ATTCCACCAAAACAAACCAAGAAAGTCAACAGTAATACGGTATGTGATGT
TTTGACATTGAGAGACCATTTTTTGCTATTTTTAGTTTTTAGCACTGTTT
AAAGCACAAATTTTGGTCTTGGTCAGGTGAAAAAGAGACATTACCGAATC
CGGTCTAATTTGTTTTGTAAAGTCCATCTTTCCCCTGAGAAGGTAATTTG
TTAGATACACAATAGGTTGTAAATTAGATTTTCTAGTTCTCCTTTTTGTA
TTCTCAATTTCAAAATTCTTTGAGCGAAGTACTAACTAAAAAGTTTAC

Coding sequence (CDS) from alignment at sc0000456:129203..131250-

>TCONS_00023586 ID=TCONS_00023586|Name=TCONS_00023586|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000456:129203..131250- (Clytia hemisphaerica)
GTTTGAATTTCGATTTTATTTACACACGTGACGAAGAAAGTGTGGATGAA
ATCGAATATGGATTTGAAGATGAAGCCAAACAAAACAAAGAATCATCAGA
TAAAGCCCCATCTTCACTAAACACAAGTTGTGATGAAGATTTCTTTGATA
GTATTGGGTTGAGTCAAAAAGAACATTTCCCTCAGATGGAGCAACAACAA
CGTCGAGCTTTGCGTTCCAAATTGAATTCACTTGACAGTCGACCTGAGTC
AACAGTACGAATTAAGAATTGTAATGGTTTATTCAACTTCCTCTTAAATG
CAAATTTCCTGTGTGCAGCATCTGGACCTATGACTGGAGTTCCGCCAACT
CTGTTGTCGCCAGAGCCTTTTGAAAGTGCCACACTGAACAAATTGAAAGC
TAACATTCCACCAAAACAAACCAAGAAAGTCAACAGTAATACGGTATGTG
ATGTTTTGACATTGAGAGACCATTTTTTGCTATTTTTAGTTTTTAGCACT
GTTTAAATGAATACTTATAATGGACGATTGATATTGAAAGTTAAAAAGAG
AAGAAGCTCTTTGCCTTTACCTGGCAAGAAGGTTTGTGCTGAAAAAGAAA
ATCAATGTGTCACATCTCAACCAAAATCATTAAAGCGACCAAATCCATTT
TCAAAAACCAAGACAGATTGTGAATCCAAAGATAAATGCAAGAAATTCAT
CAATTATGATACCAAAGATATTCATCAAAGCAATTTATTAACGGATTTAT
CAAATCTATCGCAGGACAAGAGAGAACTTCGATTGAGTGACTCCAAAGAA
CCATCCTATGAACTTAAAGATGTTATAAAGGAGAAAAAAGACGAAGTCAC
TGAAGATGCAAATAGTGAAAATGTGATCTACGAAAGTTCACAAGTACCTT
TTAACTGGATGTTGAAACAGAAATTGAAATTCTTTTCTAAGAAACCTTTT
CTTTATGACATTAAATCATCACATGAACCAAAAGCTATTCATAACTTTAC
AAGTAGTTCCGACCAACCTGATGAACCATTACTGAATCAACATTTGTACA
ATTGGATACATCCATCTTTACCTGGCATACCAAACTACCCTTTGAAAACA
ACAGTGCTGGGAGGCTCGTCAAAAGAAGAGAAAAACTGTATAAACCTTTT
TGCAAATAATATGGAACTTCGTGATATTATAATGAAGGAATGGAGAAAGA
GTTTTCAATCATTATATAACATGTTAAAGACATCATATTGTCCTTACTTT
TATATTTGTGGTCATCAATTCTCAGTGTTGTTCAAATCATCTAGTGTTGG
ACATGATGGAATGTGTGCAGTGCTAGGACCAACCACTAAAGGATTGAGAG
ATTTGCTTTCTCAAGAAGGTTTGAATTTCGATTTTATTTACACACGTGAC
GAAGAAAGTGTGGATGAAATCGAATATGGATTTGAAGATGAAGCCAAACA
AAACAAAGAATCATCAGATAAAGCCCCATCTTCACTAAACACAAGTTGTG
ATGAAGATTTCTTTGATAGTATTGGGTTGAGTCAAAAAGAACATTTCCCT
CAGATGGAGCAACAACAACGTCGAGCTTTGCGTTCCAAATTGAATTCACT
TGACAGTCGACCTGAGTCAACAGTACGAATTAAGAATTGTAATGGTTTAT
TCAACTTCCTCTTAAATGCAAATTTCCTGTGTGCAGCATCTGGACCTATG
ACTGGAGTTCCGCCAACTCTGTTGTCGCCAGAGCCTTTTGAAAGTGCCAC
ACTGAACAAATTGAAAGCTAACATTCCACCAAAACAAACCAAGAAAGTCA
ACAGTAATACGGTATGTGATGTTTTGACATTGAGAGACCATTTTTTGCTA
TTTTTAGTTTTTAGCACTGTTTAAATGAATACTTATAATGGACGATTGAT
ATTGAAAGTTAAAAAGAGAAGAAGCTCTTTGCCTTTACCTGGCAAGAAGG
TTTGTGCTGAAAAAGAAAATCAATGTGTCACATCTCAACCAAAATCATTA
AAGCGACCAAATCCATTTTCAAAAACCAAGACAGATTGTGAATCCAAAGA
TAAATGCAAGAAATTCATCAATTATGATACCAAAGATATTCATCAAAGCA
ATTTATTAACGGATTTATCAAATCTATCGCAGGACAAGAGAGAACTTCGA
TTGAGTGACTCCAAAGAACCATCCTATGAACTTAAAGATGTTATAAAGGA
GAAAAAAGACGAAGTCACTGAAGATGCAAATAGTGAAAATGTGATCTACG
AAAGTTCACAAGTACCTTTTAACTGGATGTTGAAACAGAAATTGAAATTC
TTTTCTAAGAAACCTTTTCTTTATGACATTAAATCATCACATGAACCAAA
AGCTATTCATAACTTTACAAGTAGTTCCGACCAACCTGATGAACCATTAC
TGAATCAACATTTGTACAATTGGATACATCCATCTTTACCTGGCATACCA
AACTACCCTTTGAAAACAACAGTGCTGGGAGGCTCGTCAAAAGAAGAGAA
AAACTGTATAAACCTTTTTGCAAATAATATGGAACTTCGTGATATTATAA
TGAAGGAATGGAGAAAGAGTTTTCAATCATTATATAACATGTTAAAGACA
TCATATTGTCCTTACTTTTATATTTGTGGTCATCAATTCTCAGTGTTGTT
CAAATCATCTAGTGTTGGACATGATGGAATGTGTGCAGTGCTAGGACCAA
CCACTAAAGGATTGAGAGATTTGCTTTCTCAAGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013254XLOC_013254Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023586-proteinTCONS_00023586-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023586-exon-sc0000456-1575043694:130284..131250TCONS_00023586-exon-sc0000456-1575043694:130284..131250Clytia hemisphaericaexon
TCONS_00023586-exon-sc0000456-1575043694:129203..129904TCONS_00023586-exon-sc0000456-1575043694:129203..129904Clytia hemisphaericaexon
TCONS_00023586-exon-sc0000456-1510915933:130284..131250TCONS_00023586-exon-sc0000456-1510915933:130284..131250Clytia hemisphaericaexon
TCONS_00023586-exon-sc0000456-1510915933:129203..129904TCONS_00023586-exon-sc0000456-1510915933:129203..129904Clytia hemisphaericaexon
TCONS_00023586-exon-sc0000456-1491911889:130284..131250TCONS_00023586-exon-sc0000456-1491911889:130284..131250Clytia hemisphaericaexon
TCONS_00023586-exon-sc0000456-1491911889:129203..129904TCONS_00023586-exon-sc0000456-1491911889:129203..129904Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:129203..131250 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.4177	9.81426	54.3053	66.0398	25.0072	20.3011	9.04108	10.1209	6.37453	8.15855	6.11236	3.69702	4.07983	2.63446	3.17673	5.69674	4.76953	4.2772	1.68587	1.94137	1.93734	2.10764	4.36241	6.38657	4.44633	8.76046	3.50317	2.27742	4.59846	4.84968
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR024861Donson
Blast
[Close]
BLAST of TCONS_00023586 vs. Swiss-Prot (Human)
Match: DONS (Protein downstream neighbor of Son OS=Homo sapiens GN=DONSON PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.592e-37
Identity = 99/320 (30.94%), Postives = 168/320 (52.50%), Query Frame = 1 
Query:  481 ESSQVPFNWMLKQKLKFFSKKPFLY--DIKSSHE---------------PKAIHNFTSSSDQPDEPLLNQHLYNWIHPSLPGIPNYPLKTTVLGGSSKEEKNCINLFANNMELRDIIMKEWRKSFQSLYNMLKTSYCPYFYICGHQFSVLFKSSSV-GHDGMCAVLGPTTKGLRDLLSQEGLNFDFIYTRD----EESVDEIEYGFEDEAKQNKESSDKAPSSLNTSCDEDFFDSIGLSQKEHFPQMEQQQRRALRSKLNSLDSRPESTVRIKXXXXXXXX--XXXXXXXXXXSGPMTGVPPTLLSPEPFESATLNKLKA 1368
            +S+++P +W +K +L F S +PF +   +K+  E               PK+I +   SS+        Q L  W+HP+L  +P +P       G+ ++     + ++N+  L+ ++M +W  SF SLYN+LKT  CPYFY+C +QF+VLF+++ + G D + A++ PTT+GLR+ +  EG+ F     ++    +E+      G+ +E   + E  +++ S         + + +G+  K   P +   + R  + ++  +D RPES V +K  N       L+N+  L A SGP  G+PPTLLSP  F  AT+  LKA
Sbjct:  149 KSTELPVDWSIKTRLLFTSSQPFTWADHLKAQEEAQGLVQHCRATEVTLPKSIQDPKLSSEL--RCTFQQSLIYWLHPALSWLPLFPRI-----GADRKMAGKTSPWSNDATLQHVLMSDWSVSFTSLYNLLKTKLCPYFYVCTYQFTVLFRAAGLAGSDLITALISPTTRGLREAMRNEGIEFSLPLIKESGHKKETASGTSLGYGEEQAISDEDEEESFS---------WLEEMGVQDKIKKPDILSIKLRKEKHEVQ-MDHRPESVVLVKGINTFTLLNFLINSKSLVATSGPQAGLPPTLLSPVAFRGATMQMLKA 451
The following BLAST results are available for this feature:
BLAST of TCONS_00023586 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DONS1.592e-3730.94Protein downstream neighbor of Son OS=Homo sapiens... [more]
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