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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023589 ID=TCONS_00023589|Name=TCONS_00023589|organism=Clytia hemisphaerica|type=transcript|length=1427bp GAATGATTCTCAAAGGACCTTGAACCTCAGTAATCGATATTGTAATCTAT CTTTGATAGCaattgatcaaatttttcaaaaacagaaATTTGTTTGTATT GCGTACTGTGGTAGAAGATATGTTGCAACGACCAGGAGTTTTCGTTCTCT TTCTTTTGCTGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAAT GTCgagaagagaacaattaaaggcaatttggatgaaaatgaaaaaaactt gttGAAGATTATGGATGattcgTTGAAGAACGAGATCGTGTTAGATGCAC TGCATTCCAACTTATACGACAAAGTGTTTGACGCGACGAAAGGAGGTGAA AGCGAAGAGAAGAAAGAAAGTAAAAGtgaaaaagagaaagaagaaaagat ggAGAAATTATTTGAATCATATgtcaaagaaaaacagaaagaaaaatcaa aagggaCTAGGGACGAGCCTTTATTGATTGGTACAAAAACTCTTAATGAA AGTCAACGAGAATCTCCATCAGATGTGGACGATCTTGATGAGGATGAGAT GCCTCACCACAACCAACAACCATCACTCGTCACCAAAGATGAAGGTCTTC ACCAGAGTGTTTCGAGAGAACTGAAAGACATTCTCATCCACCACGAAGAT GAAATTGACGAAGATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGA AGATGAAGAATTTGTTGatcgaaaattgaaaagaattgCCAAGAAAGaTC CTGTTTGGTTTTGGAGTCGACGACGCCGACGCCGACGTCGAGCCACGACC ACGACGACAACAACGCAGGCTCCTTTCTCCTCCAACATACGTCATATACC CGGTTATCTAGGACATAAGTTTACAGTGGCCGATGCTGTCCTCATCAGAA AGACAAGAAGGagaagaaactgaaaattgATCTGCGTTTTATCAAAAACA GAATGTCAAACAAAGATATTCATTTATTACCCTAAATTTAATCATTCATC GTAGAAGACTTATAATATGAAgcttgtttttttgttattttgacatttac tagaatatattggaattacttaaaaataacaaactgcTTAAATTATTGTT CAAGATACCATATAAGCTTCTAAAAGCAAAGATTTCAAGGAAAACAACCA ATCGATTTAcaatatatttcattttctttcaaagaagataaattcatatt aaaaatctttgttacAAAAGCTTCCACCAGTTTCTTAGTTGAAGTTCTTC AATTGTTCGATCAATTCTTTGACGACCTTGACAACTTCATCTTTCTTGTC TTTGCTCATTTGCCAGACAGTTTTGATAAATTCTCGAATGAGTTGAAATT TGCTTTGAGCTTTATCAATAACAGCCTTCAATTGTTCTTTGATTTGAGCT TGAAGTTGTGGTACCTTGTTTTCCAAA Run BLAST on NCBI protein sequence of TCONS_00023589-protein >TCONS_00023589-protein ID=TCONS_00023589-protein|Name=TCONS_00023589-protein|organism=Clytia hemisphaerica|type=polypeptide|length=267bp
MLQRPGVFVLFLLLTVSFFEALDIGKNVEKRTIKGNLDENEKNLLKIMDD SLKNEIVLDALHSNLYDKVFDATKGGESEEKKESKSEKEKEEKMEKLFES YVKEKQKEKSKGTRDEPLLIGTKTLNESQRESPSDVDDLDEDEMPHHNQQ PSLVTKDEGLHQSVSRELKDILIHHEDEIDEDERDYEVDEGLLEDEEFVD RKLKRIAKKDPVWFWSRRRRRRRRATTTTTTTQAPFSSNIRHIPGYLGHK FTVADAVLIRKTRRRRN Run BLAST on NCBI transcript from alignment at sc0000456:196699..200375- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023589 ID=TCONS_00023589|Name=TCONS_00023589|organism=Clytia hemisphaerica|type=transcript|length=3677bp|location=Sequence derived from alignment at sc0000456:196699..200375- (Clytia hemisphaerica) GAATGATTCTCAAAGGACCTTGAACCTCAGTAATCGATATTGTAATCTAT
CTTTGATAGCAATTGATCAAATTTTTCAAAAACAGAAATTTGTTTGTATT
GCGTACTGTGGTAGAAGATATGTTGCAACGACCAGGAGTTTTCGTTCTCT
TTCTTTTGCTGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAAT
GTCGAGAAGAGAACAATTAAAGGCAATTTGGATGAAAATGAAAAAAACTT
GTTGAAGATTATGGATGGTAAGTTATTTCATTGAAAACCATTAAATTTAA
AGCTTGAGCAGAATTTCTTGCAGATGGGAAAGGAAACCACTTATTTCCGA
TCGAAAATGCAACTGGGATTGCAGACAACGTCAGATTGTTAAGTAAACAA
ATATTCTCAGGTTTTGAAAAATATACTGTGCAAAAAAAATCAAAAAAGAG
CACTAAATTCAATCCGCTGTACCGATTGTGACGCAAACCCATTTGTGCTT
GAGAAAGATTGAATATTCAATATTGAGAACGCTAGCTACCATCCTGTCAG
CTCAATGTGCATTTTTGGACGGCCTCAGTTTATGGGCATATATATTTTTG
CATTTCCATCTGTAATCTTGGGCAAAAATGCATGGACGAAAAAACTCTTT
ACATCCCTGTCTCACAGCCCCGGTGGAACTTTTGTCCTCGATGAGGATAA
AAATTCCTATTGAAATCCAAATGGGGAAAGAAATTCTATTGTTCCGAGGT
TCAAAAATCCAGTGGGGATGGTTTTGGAGTGCAATCTTTAAGCATCAAAT
TTCGAGTAGGGATGAAATAAAAGTCAATTTCCTAGCGGGGCTGAAATTCC
AGGGTATATTCTCACCGGGGACAAAATTTTTGCCAAATTTTCCAGTATGG
CTAGGGTCCCAGCGGGTCTTTGACACAGGGGGTGCTGTCTCTTTGTTTGG
GTTTAGTCGGAAAACATGCAAGTTCACATAAAGATTAAAAAAGACAGCAA
AGCATTTTCTAAAGAAGCATTATGCACAATCTATGAGAATAGATTTTTCT
GATCTCCACCATATTGTTAACCGGTTTGTTTTTTAAGCGGTCTGCACGAG
TTTTTACGGAATGTAATGGGTTCTTTTCGCATAACAACGGGCTAACATAG
AACGATTTTGCCCGTCGTCAAGAAAATTCATTGTGACGTCAGCTTTATTA
CCCTATCGCTCGGTCAACGCAAGATCTCGCAGGCCCAGTCTCTACTTGAC
CTCGGGCAACTAACCGGTCATTATTGTATTATCGTTAAGCCTCATTTTTT
TCAGATTCGTTGAAGAACGAGATCGTGTTAGATGCACTGCATTCCAACTT
ATACGACAAAGTGTTTGACGCGACGAAAGGAGGTGAAAGCGAAGAGAAGA
AAGAAAGTAAAAGTGAAAAAGAGAAAGAAGAAAAGATGGAGAAATTATTT
GAATCATATGTCAAAGAAAAACAGAAAGAAAAATCAAAAGGGACTAGGGA
CGAGCCTTTATTGATTGGTACAAAAACTCTTAATGAAAGTNAGGGACTAG
GGACGAGCCTTTATTGATTGGTACAAAAACTCTTATTGAAAGCAAGTGAA
CAAAAGCTTTTTTTCTAATCAAGAGGCTGTTGTGCGAATTTCTCCTGTAT
CTTTCATCTAATTATCTTTCATTATCAATTCTATTATTTTCCCTACACAA
GTAGTCCACACAAAGTCCACTACTCCAAATGAATGAACCCTCTTCTTTTC
TTTCGGTAAGGTCAACGAGAATCTCCATCAGATGTGGACGATCTTGATGA
GGATGAGATGCCTCACCACAACCAACAACCATCACTCGTCACCAAAGATG
AAGGTCTTCACCAGAGTGTTTCGAGAGAACTGAAAGACATTCTCATCCAC
CACGAAGATGAAATTGACGAAGATGAAAGAGATTATGAAGTTGATGAAGG
ACTGTTGGAAGATGAAGAATTTGTTGATCGAAAATTGAAAAGAATTGCCA
AGAAAGGTTAGAAAATGCAAAAACCAATTTTAGCCCGGCTGAACTTCAGC
CAGGCAAAGCTTTAAAAGGCCTTTTTTTTGCTCTATCTTTTTTATACCTT
CTCGAGTGCTGGGTAGAACCAAGAAGTGACGAAAAAGTTTATTCCTCCGN
TTAGCCCGGCTGAACTTCAGCCAGGAAAGCTTTAAAAGGCCTTTTTTTTG
CTCTATCTTTTTTATACCTTCTCGAGTGCTAGGTAGAACCAAGAAGTGAC
GAAAAAGAGTTTATTCCTCCTAAAAGGAGCTTTAGGTTTTCGACGATTTT
GAGAGAAGAGAATTTCACAACAATCGCAGATTGTAATTCTCTTTTAGGTC
AGTTTTCGATTTCTACGATTCTTAGTTATACTACTTGTTCACGAATCTTG
TTCCTTTTTGAGAGTAGGTAAAGACTAAAAATCGATTCTTTGTTTATGTT
TAGATCCTGTTTGGTTTTGGAGTCGACGACGCCGACGCCGACGTCGAGCC
ACGACCACGACGACAACAACGCAGGCTCCTTTCTCCTCCAACATACGTCA
TATACCCGGTTATCTAGGACATAAGTTTACAGTGGCCGATGCTGTCCTCA
TCAGAAAGACAAGAAGGTAAGCAAATACATTGCATTATTTCAAAATCTTT
TCCCCTTCGACCTCAATGATTCTCGTTATATTCCCTCCCATAAAATTTTC
GGTGAGAATTTTACATCCATGCCGAATCCATAGAGGAGCTACTGTGAGAT
CATTTATAGAGAATATTCTTTACACTCATGTCTCTTTGAAAACTTGATGA
AATATTTGTAGATCATTATGACTTGATGACACCCCTGTGTCAGTGATCCA
GTGCCTATCAATGATTGAATCTCGTTCAGGGCCAGCGAAACTGGGGGGGT
TGGGGGGCCATGCCCCCCCCCCACTTTTTTGCTAAGAAAGGCCCGTCGGC
GCCAACCATGGTGGCGCCTCCTTAGACACTTACTATTTTTGGCCCCTCCA
CTTTCAAAATTGATTCGCCGGCCCTGTCGTTGGGATTAGGAAATCTTTTT
TAATCCCTCGATCGTTGGAATTACACGAATCTCATTGATTCAACTCAAAG
AATTTAGCCGATTTGCTGTTTACATAATTTTGCTTGATGATAAAACTTCT
TATTTTTTAGGAGAAGAAACTGAAAATTGATCTGCGTTTTATCAAAAACA
GAATGTCAAACAAAGATATTCATTTATTACCCTAAATTTAATCATTCATC
GTAGAAGACTTATAATATGAAGCTTGTTTTTTTGTTATTTTGACATTTAC
TAGAATATATTGGAATTACTTAAAAATAACAAACTGCTTAAATTATTGTT
CAAGATACCATATAAGCTTCTAAAAGCAAAGATTTCAAGGAAAACAACCA
ATCGATTTACAATATATTTCATTTTCTTTCAAAGAAGATAAATTCATATT
AAAAATCTTTGTTACAAAAGCTTCCACCAGTTTCTTAGTTGAAGTTCTTC
AATTGTTCGATCAATTCTTTGACGACCTTGACAACTTCATCTTTCTTGTC
TTTGCTCATTTGCCAGACAGTTTTGATAAATTCTCGAATGAGTTGAAATT
TGCTTTGAGCTTTATCAATAACAGCCTTCAATTGTTCTTTGATTTGAGCT
TGAAGTTGTGGTACCTTGTTTTCCAAA Coding sequence (CDS) from alignment at sc0000456:196699..200375- >TCONS_00023589 ID=TCONS_00023589|Name=TCONS_00023589|organism=Clytia hemisphaerica|type=CDS|length=4020bp|location=Sequence derived from alignment at sc0000456:196699..200375- (Clytia hemisphaerica) GAGAAGAAACTGAATCCTGTTTGGTTTTGGAGTCGACGACGCCGACGCCG ACGTCGAGCCACGACCACGACGACAACAACGCAGGCTCCTTTCTCCTCCA ACATACGTCATATACCCGGTTATCTAGGACATAAGTTTACAGTGGCCGAT GCTGTCCTCATCAGAAAGACAAGAAGGTCAACGAGAATCTCCATCAGATG TGGACGATCTTGATGAGGATGAGATGCCTCACCACAACCAACAACCATCA CTCGTCACCAAAGATGAAGGTCTTCACCAGAGTGTTTCGAGAGAACTGAA AGACATTCTCATCCACCACGAAGATGAAATTGACGAAGATGAAAGAGATT ATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTTGTTGATCGAAAA TTGAAAAGAATTGCCAAGAAAGATTCGTTGAAGAACGAGATCGTGTTAGA TGCACTGCATTCCAACTTATACGACAAAGTGTTTGACGCGACGAAAGGAG GTGAAAGCGAAGAGAAGAAAGAAAGTAAAAGTGAAAAAGAGAAAGAAGAA AAGATGGAGAAATTATTTGAATCATATGTCAAAGAAAAACAGAAAGAAAA ATCAAAAGGGACTAGGGACGAGCCTTTATTGATTGGTACAAAAACTCTTA ATGAAAATGTTGCAACGACCAGGAGTTTTCGTTCTCTTTCTTTTGCTGAC TGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAATGTCGAGAAGAGAA CAATTAAAGGCAATTTGGATGAAAATGAAAAAAACTTGTTGAAGATTATG GATGGAGAAGAAACTGAATCCTGTTTGGTTTTGGAGTCGACGACGCCGAC GCCGACGTCGAGCCACGACCACGACGACAACAACGCAGGCTCCTTTCTCC TCCAACATACGTCATATACCCGGTTATCTAGGACATAAGTTTACAGTGGC CGATGCTGTCCTCATCAGAAAGACAAGAAGGTCAACGAGAATCTCCATCA GATGTGGACGATCTTGATGAGGATGAGATGCCTCACCACAACCAACAACC ATCACTCGTCACCAAAGATGAAGGTCTTCACCAGAGTGTTTCGAGAGAAC TGAAAGACATTCTCATCCACCACGAAGATGAAATTGACGAAGATGAAAGA GATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTTGTTGATCG AAAATTGAAAAGAATTGCCAAGAAAGATTCGTTGAAGAACGAGATCGTGT TAGATGCACTGCATTCCAACTTATACGACAAAGTGTTTGACGCGACGAAA GGAGGTGAAAGCGAAGAGAAGAAAGAAAGTAAAAGTGAAAAAGAGAAAGA AGAAAAGATGGAGAAATTATTTGAATCATATGTCAAAGAAAAACAGAAAG AAAAATCAAAAGGGACTAGGGACGAGCCTTTATTGATTGGTACAAAAACT CTTAATGAAAATGTTGCAACGACCAGGAGTTTTCGTTCTCTTTCTTTTGC TGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAATGTCGAGAAG AGAACAATTAAAGGCAATTTGGATGAAAATGAAAAAAACTTGTTGAAGAT TATGGATGGAGAAGAAACTGAATCCTGTTTGGTTTTGGAGTCGACGACGC CGACGCCGACGTCGAGCCACGACCACGACGACAACAACGCAGGCTCCTTT CTCCTCCAACATACGTCATATACCCGGTTATCTAGGACATAAGTTTACAG TGGCCGATGCTGTCCTCATCAGAAAGACAAGAAGGTCAACGAGAATCTCC ATCAGATGTGGACGATCTTGATGAGGATGAGATGCCTCACCACAACCAAC AACCATCACTCGTCACCAAAGATGAAGGTCTTCACCAGAGTGTTTCGAGA GAACTGAAAGACATTCTCATCCACCACGAAGATGAAATTGACGAAGATGA AAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTTGTTG ATCGAAAATTGAAAAGAATTGCCAAGAAAGATTCGTTGAAGAACGAGATC GTGTTAGATGCACTGCATTCCAACTTATACGACAAAGTGTTTGACGCGAC GAAAGGAGGTGAAAGCGAAGAGAAGAAAGAAAGTAAAAGTGAAAAAGAGA AAGAAGAAAAGATGGAGAAATTATTTGAATCATATGTCAAAGAAAAACAG AAAGAAAAATCAAAAGGGACTAGGGACGAGCCTTTATTGATTGGTACAAA AACTCTTAATGAAAATGTTGCAACGACCAGGAGTTTTCGTTCTCTTTCTT TTGCTGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAATGTCGA GAAGAGAACAATTAAAGGCAATTTGGATGAAAATGAAAAAAACTTGTTGA AGATTATGGATGGAGAAGAAACTGAATCCTGTTTGGTTTTGGAGTCGACG ACGCCGACGCCGACGTCGAGCCACGACCACGACGACAACAACGCAGGCTC CTTTCTCCTCCAACATACGTCATATACCCGGTTATCTAGGACATAAGTTT ACAGTGGCCGATGCTGTCCTCATCAGAAAGACAAGAAGGTCAACGAGAAT CTCCATCAGATGTGGACGATCTTGATGAGGATGAGATGCCTCACCACAAC CAACAACCATCACTCGTCACCAAAGATGAAGGTCTTCACCAGAGTGTTTC GAGAGAACTGAAAGACATTCTCATCCACCACGAAGATGAAATTGACGAAG ATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGAATTT GTTGATCGAAAATTGAAAAGAATTGCCAAGAAAGATTCGTTGAAGAACGA GATCGTGTTAGATGCACTGCATTCCAACTTATACGACAAAGTGTTTGACG CGACGAAAGGAGGTGAAAGCGAAGAGAAGAAAGAAAGTAAAAGTGAAAAA GAGAAAGAAGAAAAGATGGAGAAATTATTTGAATCATATGTCAAAGAAAA ACAGAAAGAAAAATCAAAAGGGACTAGGGACGAGCCTTTATTGATTGGTA CAAAAACTCTTAATGAAAATGTTGCAACGACCAGGAGTTTTCGTTCTCTT TCTTTTGCTGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAAAATG TCGAGAAGAGAACAATTAAAGGCAATTTGGATGAAAATGAAAAAAACTTG TTGAAGATTATGGATGGAGAAGAAACTGAATCCTGTTTGGTTTTGGAGTC GACGACGCCGACGCCGACGTCGAGCCACGACCACGACGACAACAACGCAG GCTCCTTTCTCCTCCAACATACGTCATATACCCGGTTATCTAGGACATAA GTTTACAGTGGCCGATGCTGTCCTCATCAGAAAGACAAGAAGGTCAACGA GAATCTCCATCAGATGTGGACGATCTTGATGAGGATGAGATGCCTCACCA CAACCAACAACCATCACTCGTCACCAAAGATGAAGGTCTTCACCAGAGTG TTTCGAGAGAACTGAAAGACATTCTCATCCACCACGAAGATGAAATTGAC GAAGATGAAAGAGATTATGAAGTTGATGAAGGACTGTTGGAAGATGAAGA ATTTGTTGATCGAAAATTGAAAAGAATTGCCAAGAAAGATTCGTTGAAGA ACGAGATCGTGTTAGATGCACTGCATTCCAACTTATACGACAAAGTGTTT GACGCGACGAAAGGAGGTGAAAGCGAAGAGAAGAAAGAAAGTAAAAGTGA AAAAGAGAAAGAAGAAAAGATGGAGAAATTATTTGAATCATATGTCAAAG AAAAACAGAAAGAAAAATCAAAAGGGACTAGGGACGAGCCTTTATTGATT GGTACAAAAACTCTTAATGAAAATGTTGCAACGACCAGGAGTTTTCGTTC TCTTTCTTTTGCTGACTGTCAGTTTTTTTGAGGCACTTGATATTGGGAAA AATGTCGAGAAGAGAACAATTAAAGGCAATTTGGATGAAAATGAAAAAAA CTTGTTGAAGATTATGGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00023589-exon-sc0000456-1575043694:200109..200375 | TCONS_00023589-exon-sc0000456-1575043694:200109..200375 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1575043694:198838..199071 | TCONS_00023589-exon-sc0000456-1575043694:198838..199071 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1575043694:198370..198615 | TCONS_00023589-exon-sc0000456-1575043694:198370..198615 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1575043694:197760..197922 | TCONS_00023589-exon-sc0000456-1575043694:197760..197922 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1575043694:196699..197215 | TCONS_00023589-exon-sc0000456-1575043694:196699..197215 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1510915933:200109..200375 | TCONS_00023589-exon-sc0000456-1510915933:200109..200375 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1510915933:198838..199071 | TCONS_00023589-exon-sc0000456-1510915933:198838..199071 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1510915933:198370..198615 | TCONS_00023589-exon-sc0000456-1510915933:198370..198615 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1510915933:197760..197922 | TCONS_00023589-exon-sc0000456-1510915933:197760..197922 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1510915933:196699..197215 | TCONS_00023589-exon-sc0000456-1510915933:196699..197215 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1491911889:200109..200375 | TCONS_00023589-exon-sc0000456-1491911889:200109..200375 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1491911889:198838..199071 | TCONS_00023589-exon-sc0000456-1491911889:198838..199071 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1491911889:198370..198615 | TCONS_00023589-exon-sc0000456-1491911889:198370..198615 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1491911889:197760..197922 | TCONS_00023589-exon-sc0000456-1491911889:197760..197922 | Clytia hemisphaerica | exon |
TCONS_00023589-exon-sc0000456-1491911889:196699..197215 | TCONS_00023589-exon-sc0000456-1491911889:196699..197215 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000456 | supercontig | sc0000456:196699..200375 - |
Blast
The following BLAST results are available for this feature:
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