TCONS_00023597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023597
Unique NameTCONS_00023597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length571

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023597 ID=TCONS_00023597|Name=TCONS_00023597|organism=Clytia hemisphaerica|type=transcript|length=571bp
CGGCGGGATATTTCGAGataaaaaatggctactttTAAAACATTTCTGAG
ATTTCTTTTAATTGCttcaattattttgatgacaCATTCACCGCAACCTG
TGATATGTAAACCTGCGTTTGAACCAAAACTCGGACACTGGACGAATCGG
GAATTAGTAGACCAGGAAAACGGATTACGAAAATCTATTACCGATCAAAT
TACCGAGCATGAGATCTTTGATGCAATCACGCGAATGTTTTTGGAAAAGT
TTAATAAAACTTCGAACAATAAAAACGGTGATGTGCAAACAGCAACAGAC
TGAAAATTATCAGAGTATGTCATAGTTGATTTTGGTGATGATAAAACTCG
ATGATAAGAAACGAAAATCTTTCATTNTGATGCAATCACGCGAATGTTTT
TGGAAAAGTTTAATAAAACTTCGAACAATAAAAACGGTGATGTGCAAACA
GCAACAGACTGAAAATTATCAGGAGTATGTCATAGTTGATTTTGGTGATG
ATAAAACTCGATGATAAGAAACGGAAATCTTTCATCTGAAGAATTATTTT
GTTTATGATCATTATTTTACT
Run BLAST on NCBI

transcript from alignment at sc0000456:178074..178644

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023597 ID=TCONS_00023597|Name=TCONS_00023597|organism=Clytia hemisphaerica|type=transcript|length=571bp|location=Sequence derived from alignment at sc0000456:178074..178644 (Clytia hemisphaerica)
AGTAAAATAATGATCATAAACAAAATAATTCTTCAGATGAAAGATTTCCG
TTTCTTATCATCGAGTTTTATCATCACCAAAATCAACTATGACATACTCC
TGATAATTTTCAGTCTGTTGCTGTTTGCACATCACCGTTTTTATTGTTCG
AAGTTTTATTAAACTTTTCCAAAAACATTCGCGTGATTGCATCANAATGA
AAGATTTTCGTTTCTTATCATCGAGTTTTATCATCACCAAAATCAACTAT
GACATACTCTGATAATTTTCAGTCTGTTGCTGTTTGCACATCACCGTTTT
TATTGTTCGAAGTTTTATTAAACTTTTCCAAAAACATTCGCGTGATTGCA
TCAAAGATCTCATGCTCGGTAATTTGATCGGTAATAGATTTTCGTAATCC
GTTTTCCTGGTCTACTAATTCCCGATTCGTCCAGTGTCCGAGTTTTGGTT
CAAACGCAGGTTTACATATCACAGGTTGCGGTGAATGtgtcatcaaaata
attgaaGCAATTAAAAGAAATCTCAGAAATGTTTTAaaagtagccatttt
ttatCTCGAAATATCCCGCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013263XLOC_013263Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023597-exon-sc0000456-1491911889:178074..178644TCONS_00023597-exon-sc0000456-1491911889:178074..178644Clytia hemisphaericaexon
TCONS_00023597-exon-sc0000456-1510915933:178074..178644TCONS_00023597-exon-sc0000456-1510915933:178074..178644Clytia hemisphaericaexon
TCONS_00023597-exon-sc0000456-1575043694:178074..178644TCONS_00023597-exon-sc0000456-1575043694:178074..178644Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000456supercontigsc0000456:178074..178644 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.784039	0.668991	0	0	0	0	0	0	0	0	0	0	0	0	0.0556504	0	7.0629	25.8652	0	0	0.0947566	0.138657	0.786593	0.306483	0	0.187819	0.268768	0.286837	0.543889	0.664964
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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