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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023654 ID=TCONS_00023654|Name=TCONS_00023654|organism=Clytia hemisphaerica|type=transcript|length=723bp
gttttttttcttcatgaaGACAGACATATGGTGAGATTCGCTGTTTTGAC
CTTTTTGGCAAAATAAGTTGATACGAATTTATACGAAGCAACAAAAATGG
TGTTTTATATATTCTTTCTTATTGGTGGTCTAATCCCATCTGTTTTTGCT
GGTAAACCATCAATTGTCCGGAAAAAGGAAATCACTAGTGGTAAAGCTCC
GGACGGCGAGCCTATGTTTTTGTCATATATTAATTTCGCAAAATTCCAAA
ACAAAATGCTGGTTGTTGGAGTACCTTCAGCGTCGATCATCAATGCAACT
TTTGACGAGTGCAATGAGAAATGTTTGGAGATGAATGATTGCGTTAGTAT
GAATGTTTATAAGGAGAATGGAACCAAGTGTGACTTAATGAGTACAGATC
AGCACCACGCCAATATGACAGTACTTGATGTACAAGGTGTAGATTATTAT
GAGCCAACGagCGATTGCGTGAGAGGGAACACTAACTGTACCAACAACTC
TTTTTGTATGCCTGACCACCATACTGGCGATGTGAAATGTCAATGTAAAC
GATCCAAAACACAAAATTGGAACTGCTTGGAAAACGACACAAAATCCTCG
ACACAAAATCCTCTGGTACCAGATCCCAACGAAAACCAACAATACTGGTT
TCCGTATGTTGGGCCAACTTGGAAAGTTTCCTTCTACTTTGACGCCTCAT
CGATCGAGCTCGACATGTTACCG Run BLAST on NCBI transcript from alignment at sc0000457:245089..255355- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023654 ID=TCONS_00023654|Name=TCONS_00023654|organism=Clytia hemisphaerica|type=transcript|length=10267bp|location=Sequence derived from alignment at sc0000457:245089..255355- (Clytia hemisphaerica)
GTTTTTTTTCTTCATGAAGACAGACATATGGTGAGATTCGCTGTTTTGAC
CTTTTTGGCAAAATAAGTTGATACGAATTTATACGAAGCAACAAAAATGG
TGTTTTATATATTCTTTCTTATTGGTGGTCTAATCCCATCTGTTTTTGCT
GGTAAACCATCAATTGTCCGGAAAAAGGAAATCACTAGTGGTAAAGCTCC
GGACGGCGAGCCTATGTTTTTGTCATATATTAATTTCGCAAAATTCCAAA
ACAAAATGCTGGTTGTTGGAGTACCTTCAGCGTCGATCATCAATGCAACT
TTTGACGAGTGCAATGAGAAATGTTTGGAGATGAATGATTGCGTTAGTAT
GAATGTTTATAAGGAGAATGGAACCAAGTGTGACTTAATGAGTACAGATC
AGCACCACGCCAATATGACAGTACTTGATGTACAAGGTGTAGATTATTAT
GAGCCAACGGTTAGTAGAAATTTTTTATGCACATAACTTTTTGTTATAAT
AAGATGAAAATACTTTCTTCAGTCGATAAAAATGAGCAGGTTAAAAAAAA
ATCAACAAATTGGCCGAAAGTTTAACTTTAAAAAAGTCCTTTAAATTGTA
TACCTTTTTACGACGACCCAGAAATCAAAAATACAATGATAAAAGAGACG
TATTTCTGTGTCAAAAGCTAGGGGGGGCAAGCTATAGTTATTCGGTCATA
TCATCAACGATTTTTTCTTTACGTGAACTCTTTTTCAACTTTTTCAGGAA
GCACTCTATTCCCTGTTGTTAATTATTTTTCTTAGAGCGATTGCGTGAGA
GGGAACACTAACTGTACCAACAACTCTTTTTGTATGCCTGACCACCATAC
TGGCGATGTGAAATGTCAATGTAAACGATCCAAAACACAAAATTGGAACT
GCTTGGAAAACGACACAAAATCCTCGACACAAAATCCTCTGGGTTATGGT
TGGTTTTTGGTAGCAAAATTGCATCAAATTTTTTCAGGTCATCAAAATCA
CAATCTGATTCATCAGGCATGCCCGATGGACGAAAATACGTTCATCAGGC
ATGCCCGATGAACTAAAATACGTTCATCAGGCATGTCTGATGAACTAAAA
TACGTTCATTAGGCATGTCTGATGAACCAAAATACGTTCATCAGGCATGC
CCGATGAGCTAAAATTTTGTTATTAATAGAAAGTGAAAAACATCTTTTGA
AAATCAAAACTACGTTCTTCAAAGATGTTAAAAAATTCTCGTTTTCGTTC
TGGACTGTGGAATTAGAGGTTTGTTCCGTAAAATCTGGGCGGTGGTCCTC
AATTTCGTATTGATGTAAGACCATTTTCAGCATTGTGGGTAATTAGAGGT
CTGGGACTAGCGAGATTCCTTGGCGGGAAAAAAATTGAAGCGAGCGCTAA
ATCTTTGTTTTGATTTTCTTTGTGAAAAACAAAGACTTTTGATATTAAGT
TTCATGTTTTTGGTCATTTTAATGATTCTATTATTCAAATTTACAATACA
ATTTTGTTTTAAAATAATAAAGTTTTGAGTAATATTTTGGTCTCTATTTT
TCAAAATTTCTTCATTTTATTTGGTCTTAGTTTTACACGCTTTATAGTTC
AAACGCGTTTAATTTAGAAAGATCAACGCGTTTCACACGCGCTTTAATAA
ACAAAAGAAATATCTTAATTTGGTGATTCAGCGTTCGTCTGACGTAATTT
TTGAATTCTAGCTCAGCCAAAATGGTCGTAATACCATACTTTCAATGGAG
TGCAAATTTCAGAAACTGCTGATGCACCAATCTAAAGATATTTCCACTTT
AATATTTTTCTCCCTTAATTTAGGGACAGTGTCCTTTAATTTAGGGATTG
TCCCTTAATATAAGGACCCCTTAATTTAGTATAATCCTAGACTGGTAAAC
AACGGCATAATTCTGTTTCCTATCTGTTGCGCATATAAAATTCAGATTTA
TTTGCGTTGGCAAAAGATTCTGGCNCGTCCCTTAATATATAAGGACCCTT
TAATTTAGTATAATCCTAGACTGGTGAACAACGGCATAATTCTGTTTCCT
ATCTGTCACGCATATAAAATTCAGATTTATTTGCGTCGGCAAAAGATTCT
GGCTTCTATAGTACAGTATTCATGATATTCATGACGTAATCTTTTTATAC
GGAAGCACCCAGAAATAACCGGAAACCGGAACTAGTTCTTTTGTTATTTT
GCCACTAGTTCTGGTTATTTCGGATGCTTCCATATAAAAGATTACGTCAT
GAATATCATGAATAGTACAGTACTTTTGCGTCGTAAAAAGCCAAATTTAC
ATTGGCTTCAACCGATCACTTCGATCAGCTTCGATCGATTCAACCTACCA
CTTAACTTAATTCGACATTGATTAGCCTCCGTCTCGGAAGGGGACTGGGC
CCGAATTTGCGGACGTTTTCACAGTTTCACTTTCGTTTTCGGCTATACGA
CAGCGTTTTCAAGCAGAAAGCANGGGGGGTTGGACCTGCTGTCCAGGGGG
TCAAAAGTCACAATGTCCGAGGGGTAAATCTCCTCCACCCCCATATTCAA
TTTTTTTCTGGAAAAGCCCATCTGCACGTATGCTCGTTTTTACCCCCGTG
TAAAAAGTCATAATGTAAGTCACACAATCACAATAATTATAAAAAATCAC
CAAAGAAACTACAAAAGTATAAAAAGCCACTTGTCCTACCTGGTATTTGT
GTTCATCAGCATTGATATTGTAAGCGAGTTTGAACAGGCCCTCGATCACC
ACAATGTTGCCGGTAGTGATGTCAAAAGAAAACACTTTCAATTTTAGATG
GAGTATCCATTCAAGTTTCAATTGTGGTATTTCCAATAATGTCCATTGAC
TAGAGGTTTGATATTCTGTAAAAAAAAACATTANCACTTAGAGAAAATGG
TACTATACATACTATGGAAGCCCATTCTATACTCCTAAATGATATCAGCA
GTTGAGAGGGTTGATTAAAATACAACTCAAAGCACACAATAAAATATACA
TATATATTTGTCCAGAAAGAACTGGCATGTTGTTTGCTTTGTTTTGGTGT
TTAAAAATATGTACTTATCAGTCCTAAAAAAATANTCGATACACATTTTC
TTTATAAATGACTTCAATTTACGAATCAGGGCTTGGTTTACTTAGCGTTT
TAGCTCATTTTCTGAAAAATTTGTATTCAAATGAAAGTCAACAAGACGAC
TGAAAAGTCGAAAATTTCGCCTTGAAAATATGTATCGATAAATACACCCC
TGAGTCAGTGGCCCGGTCAGATCCACCCCGGTGAGTAGCCCGGTGAAAAA
AATGCCTAAAAACAGCCCAAATTTTGTCCCCGGTGGAAAATTGGTAACCC
CGGGCAAAAAGGCAAAAGGTTTTGGAAACCCGGGCTGAGGCATGAAAGTT
TCTGTTTACCCCGCTGGAAATACTGAAAATTTTGATTCCCCCGGTTGAAA
TCAAGGAAAGCTTGGGTTACCCCGCTGTTGAAATTAAAAAGTAGNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTCCTTATAAACGTGTTCCTTATATAAAAAAAACGTGTAAT
GTTTTAAATTCATTTTTGATGGATTATATCCCTAGCTATGATTTAAAACA
ATGTGACACTGCTAAGAATTCATTTGCTTGATACCCTGGTCAGTGCCCCC
GACCTAATAGTTAATACCCTGGGAAATGTTAAATGTTTCCATCAACAATG
TATATTTCTTCAAAAAATCAAAAACAACACGTTGTTTTATTCTCCCCCTT
TGTGAGGCCTGGATGGTTTCATGTTTTTAAAAGAAAAAGTGTGGACATTA
TTATTTTAGTTAGTAAGTCAATGGATTTTAAAAGAAATTGTGGGATCTTT
TGTTCTTCTATCGTAACTTTTTAGCTACACACTTTTTATACGCAACACAG
TGAAGGGCTCAGGCTTCAAAATGGCCAAAAAAGCAAGTTGGCTTAGGCCC
TTAGGAACCCTAAACCTAATAAGGATGAAAAATTTTTTAAATAAGGGAAA
CCTTTTTTTTTTCTTTTTCCACTCTGAAAAGACTGAATTCTTGCTATATT
ACGACCAAAAAACTGCTGTTTTACTATCAACAATTTGAAATTTGAGGCCA
TTTTTAGCCCATCTAGAGGGTCCTTTTTTCAAAAATTTTCTTAACCGTCG
GCGCCAACCGGTGGCGCCTCCTCACACACTGATGTAGCCGTTACATCATA
ATAGTAAACATACACCACCCTTGTTAAACATCCTAAATCTACCCCTGAAT
CGAAGAAGGTGCTGGCGGAGATTTTAGGAGATTTTAGACTATCGACTCTT
AAATTTTTACACTAATAAGAAGAATGATGATAACGGTTATCAAAGGACTG
TTAAAGTGCAATTTCCTCCTGAAAATAGAAAAAATCGCTTATAATTTGTA
TTTACCCCGGAGAAAAGTAAGTCAAAATTTTTGAACCCGGTGGATTTTTT
GCTCATGAAAAAAAACCCGGTGAAAATTTATTTTTTTGAAAGTCACCCCG
GTGAACTTTCAGAGTCCACTGGGTCACTGAGACAGGGGTGTATAAATATG
AGGTACAGGCGCTAATAAAAGTGCTTTCAAACACACCTGTGTGATTATTT
TGAAACAAATCCAATCCCTGCATGCATTTCACTCTTAAAAACTGATCAAT
GAAGTAAGCCCGAAGGGCTAGAATTGGATCTCCTTAGTGCAGTGGGATTT
GAAGCCTTCCCATCCCACCAAAAATGTGCGGCCTTGAGCGACCCGCCTGT
TTTTTCTACAAATAACAGATAAAATTTCCCACTAGCTTTCAAAAAATATA
CCATTTAAAAAACAAAGAAATCACTAAATCCTATACGTCTCGTCAAAATA
CGGCGAAAAAAATAAAGAATTCAATTTTTCTTGCCTGAGAAAGGTTAAAG
ATTCAGCTTATACTTCATTTTGGGACTGATTGANGTGGAGGCATCATGTA
TAGAGTGAATGTGTGGCATTTCATTGCTTTTAATGATCACAATACCAAAC
ATCAACCAAACAAAACTGACGCCAAGCTAAATCTGTCGATCAAAAATTTC
CATGAAAATTATAATTGAAACTTGTCTCGTAAAATGCTTTTTTCAACATT
CTGGAGGTGTTCAAAGGTAGAGGTATCATATGTAGAGCCAAGCAATACAT
GAAAAGTCATTTGCTATCCCATTTGCCATGAGATATATGAGTCAACAAAT
CAAACAAAAACCAACAAATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTGTAACATGTATTATGTGTACAATTATGTCAGTCGACTTGAA
TCATGATACATTACCCCCAATTTCACTGGATGCATTTTCGCTGTGAAATT
ATCCGCAAGATTTTCTGACCGCGTTCTGAGACGGAGGCTAATTGACTACA
AACGATTCGACAATCAAAATTTACGATTGACATCCCCTGGTCTTGCTCTT
GGGAATAATGTAGATGCTATTTTTAAAAGAGAATTCTTCAAACCAGTCAA
TTGAAATCAATTGAACTGATCAATCAAAGCAATCAAATTTGATCGAACTC
AATCAAAAAAGCATAGGCAAGCATGTTTCGCCAGATTTGTTTGCAACTAA
GCTAATAATATACATATTTTTAAATTATACTGTTAGCATAGAAAAAGCTT
AGGTTTAAATATTAGTAATGGCTCTCATTTCCACAAAAGGAACTCTGATA
AGGCTTTTATTTTGTTGGAGCTGAGACTATGGAAAATGATGTGATGTGAT
GATAAAAAATACAAACAGACAAACCTGACAAAACAATGCATGCAAATCTT
ATAAATATTTTCTTCTTTATTGCCTGCTGGCTTTAATGTCCTTTGAAGCA
AGAATCTGTACTGGTGCACAGCAGACCTTTCGACCAGTTCAAAGCTTCTT
CTACCAGTATACGCTTTTCATTAATTTTGTTACTACTAAATATAGCTACG
TATTGAAATCACGATTGAGCTAACATCAGCTAACATACTTAGATTTAGCT
ACGTCGCTTTATTTAGCTACGTAACTATAATAATGAAAGGTTTCGTACTG
TCTACTTTCCACTCCAGCAATCACCTCGTGCGCACGTAAAAATTCCAGAC
CGGAATATTTAATTTACAGAACAGATTTCAGAATTTTGAAATTTTACAGA
CCAGATTGCTGTTTGTCTAAAGAAATACCTGATGAATGAATTTATTTCAT
CGGGCATACCTGATGAACGTATTTTAGTTCTTCAGGCGGGCCCGATGAAT
GTATTTTAGTTATCAGGCGTGCCTGATGAACGTATTTTCGTCCATCGGGC
ATGCCTGACGAATCAGATTGTGATTTTGATGACCTGAAAAAATTTGATGC
AATTTTGCTACCAAAAACCAACCATACTGGGTCTGTAATATTTCTGAATA
GTTCCCTAACATAGCGAAATAAGACCATTTCAGTATTGGGAAAGTTCACC
GAACTGCACTACAAGTGGTTTTTCGGCAATAAACCTGTAAGATTGCTTAG
AGGTCCTTGAGACTTTCATTCTTGTGATTAAAGAACTCACAAGGGCTGAA
ATGAAACTCAGCAATATTGGGCGGTAACTAGTAAGTGCACTTGTAAAATC
CGAAAAGTAATTCTCAGCTCACCAAATTTGGTAAAATCTTTAGCTTTCGT
TTTGAAAATACTAAATAGAAAATATCTTTGAACTTTCAGTTTAGAATGTT
GTTGTCGAGTTGACCTACTTTTAGGCGTACAAACTTTCGCGAGCAGAAAC
TTTCGTGAGGACGAAAAATCGCAAAATTCACGACATTTACTTTCGCGAAT
TTAATGGAAAAATATTTTTCGCGAGCATAAACTTTCGCGAATCAAGACGT
AAAATTGAGAAATTTCACATGAAAAATGGCTTCCAGGGACAAATACTTCT
TGAATTGGCTCGAAGATTTGTCCTTTGACTTAATAGTCTTTTAGCAGGCT
AAAAAATGCCATAAAAGTTACATTTTATTCAAAGTTTTACAGATTTTATA
TCTTATCAAGGATTTTTCGCGAGCATAAACTTTCGCGAATGGCCCTTCCT
AGCATTTTTAAAGACATTTACTTTCGCAAAAAGGGCCAAAAATCACGCCA
AGAACTAAACCAATACGATAGGCCTAAACCTACATTTGACTCTCCTCTGT
TGGGCTTAAACCTCTTTTTTCCTTGCGTGATTTTTACACAAATGCTGAAT
GCGAAGTAAGTCCTGTAGTGAAGTCAACTTTATACTAAATCTGATTCTGT
CTTTTTCAAGGGAGACACTGTAATGGTTCGTATGACGTCTTTTTGTATTC
ATCGTTTTAGTACCAGATCCCAACGAAAACCAACAATACTGGTTTCCGTA
TGTTGGGCCAACTTGGAAAGTTTCCTTCTACTTTGACGCCTCATCGATCG
AGCTCGACATGTTACCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023654-exon-sc0000457-1575043694:254897..255355 | TCONS_00023654-exon-sc0000457-1575043694:254897..255355 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1575043694:254414..254570 | TCONS_00023654-exon-sc0000457-1575043694:254414..254570 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1575043694:245089..245195 | TCONS_00023654-exon-sc0000457-1575043694:245089..245195 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1510915933:254897..255355 | TCONS_00023654-exon-sc0000457-1510915933:254897..255355 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1510915933:254414..254570 | TCONS_00023654-exon-sc0000457-1510915933:254414..254570 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1510915933:245089..245195 | TCONS_00023654-exon-sc0000457-1510915933:245089..245195 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1491911889:254897..255355 | TCONS_00023654-exon-sc0000457-1491911889:254897..255355 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1491911889:254414..254570 | TCONS_00023654-exon-sc0000457-1491911889:254414..254570 | Clytia hemisphaerica | exon |
| TCONS_00023654-exon-sc0000457-1491911889:245089..245195 | TCONS_00023654-exon-sc0000457-1491911889:245089..245195 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000457 | supercontig | sc0000457:245089..255355 - |
Blast
The following BLAST results are available for this feature:
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