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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023658 ID=TCONS_00023658|Name=TCONS_00023658|organism=Clytia hemisphaerica|type=transcript|length=978bp
CAGAATGGCTGGCATATTCTGGACGTAAATTTGAACCGATAGAAAGAGTG
TTTTGTGCTATTGCACAAACTGCTGAGGAGATTGGAGGAGTTTTAGCTGG
AGAATATAAAGACAAACTTGAAGCAGCGATTCAGACTAGTGCACCCTGGA
AGAAACtacttttttctttgtattagcactttgcttttttaaaacctact
ttttatatttttagagtaaaaaaattgaaagaaaaaaaataaccaaaatg
gcgaccatcaacatgaaaaatacaaatcaaaaaaatggtgaaaCTTCGAA
ACCCGAAAAATTTGATCGCGTAGTTGGTAttacgtcagcatttttgacag
cttttttctttaatttcctTTCTTGCTGTGCAAGGTATGTATTTACAAAG
AATCCTGAAGTCCCGTTGTCTGGTCCACAATTAACCTTCATTCGTGGATT
TGTGCAACTGATAATGATTGGTGTAGTGATGACCTTTACTAAAACATTcc
cttttgaaaacccaaacgATTTATTACCACTATTTCTGTCTGGATGTATA
AAAGCTACAGCCTCTATATTTTGTTTTACTGCATTAAAAGGTGTTAGCGT
AGGCACCGTATGTATCATTGAATCGACTACCCCTGCTGTTGCAACTTTAT
TTGGATTCGTATTCCTTAAAGAAAAGTGTAGTATGTTTAATGGTATTTTG
GGCCTTCTTACATTTGTTGGTATCGTTATTGTTATGGTTCCGAATATCAT
CTTCCCTGTCAAAACCAATTATATCAAAGACTATACTAGCTCTGTGGAGC
GATACTTACTTGGTGCAGCGTCTGCTTTTGTTGGTGTTTTACTTCGGTGT
ACATTCAAGACTGTAAGTAGAATTCTAATGATGAAAACTATGGACTATAA
ATTGTTTGTCCTGTATCCAAGTGTTGCTATGTTGGTTCTGTCACCATTGG
CGATGTTAATTCAGCAAGACTATTTGNN Run BLAST on NCBI protein sequence of TCONS_00023658-protein >TCONS_00023658-protein ID=TCONS_00023658-protein|Name=TCONS_00023658-protein|organism=Clytia hemisphaerica|type=polypeptide|length=243bp
MATINMKNTNQKNGETSKPEKFDRVVGITSAFLTAFFFNFLSCCARYVFT
KNPEVPLSGPQLTFIRGFVQLIMIGVVMTFTKTFPFENPNDLLPLFLSGC
IKATASIFCFTALKGVSVGTVCIIESTTPAVATLFGFVFLKEKCSMFNGI
LGLLTFVGIVIVMVPNIIFPVKTNYIKDYTSSVERYLLGAASAFVGVLLR
CTFKTVSRILMMKTMDYKLFVLYPSVAMLVLSPLAMLIQQDYL Run BLAST on NCBI transcript from alignment at sc0000457:4576..5553 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023658 ID=TCONS_00023658|Name=TCONS_00023658|organism=Clytia hemisphaerica|type=transcript|length=978bp|location=Sequence derived from alignment at sc0000457:4576..5553 (Clytia hemisphaerica)
NNCAAATAGTCTTGCTGAATTAACATCGCCAATGGTGACAGAACCAACAT
AGCAACACTTGGATACAGGACAAACAATTTATAGTCCATAGTTTTCATCA
TTAGAATTCTACTTACAGTCTTGAATGTACACCGAAGTAAAACACCAACA
AAAGCAGACGCTGCACCAAGTAAGTATCGCTCCACAGAGCTAGTATAGTC
TTTGATATAATTGGTTTTGACAGGGAAGATGATATTCGGAACCATAACAA
TAACGATACCAACAAATGTAAGAAGGCCCAAAATACCATTAAACATACTA
CACTTTTCTTTAAGGAATACGAATCCAAATAAAGTTGCAACAGCAGGGGT
AGTCGATTCAATGATACATACGGTGCCTACGCTAACACCTTTTAATGCAG
TAAAACAAAATATAGAGGCTGTAGCTTTTATACATCCAGACAGAAATAGT
GGTAATAAATcgtttgggttttcaaaagggAATGTTTTAGTAAAGGTCAT
CACTACACCAATCATTATCAGTTGCACAAATCCACGAATGAAGGTTAATT
GTGGACCAGACAACGGGACTTCAGGATTCTTTGTAAATACATACCTTGCA
CAGCAAGAAaggaaattaaagaaaaaagctgtcaaaaatgctgacgtaaT
ACCAACTACGCGATCAAATTTTTCGGGTTTCGAAGtttcaccattttttt
gatttgtatttttcatgttgatggtcgccattttggttattttttttctt
tcaatttttttactctaaaaatataaaaagtaggttttaaaaaagcaaag
tgctaatacaaagaaaaaagtaGTTTCTTCCAGGGTGCACTAGTCTGAAT
CGCTGCTTCAAGTTTGTCTTTATATTCTCCAGCTAAAACTCCTCCAATCT
CCTCAGCAGTTTGTGCAATAGCACAAAACACTCTTTCTATCGGTTCAAAT
TTACGTCCAGAATATGCCAGCCATTCTG Coding sequence (CDS) from alignment at sc0000457:4576..5553 >TCONS_00023658 ID=TCONS_00023658|Name=TCONS_00023658|organism=Clytia hemisphaerica|type=CDS|length=729bp|location=Sequence derived from alignment at sc0000457:4576..5553 (Clytia hemisphaerica)
CAAATAGTCTTGCTGAATTAACATCGCCAATGGTGACAGAACCAACATAG
CAACACTTGGATACAGGACAAACAATTTATAGTCCATAGTTTTCATCATT
AGAATTCTACTTACAGTCTTGAATGTACACCGAAGTAAAACACCAACAAA
AGCAGACGCTGCACCAAGTAAGTATCGCTCCACAGAGCTAGTATAGTCTT
TGATATAATTGGTTTTGACAGGGAAGATGATATTCGGAACCATAACAATA
ACGATACCAACAAATGTAAGAAGGCCCAAAATACCATTAAACATACTACA
CTTTTCTTTAAGGAATACGAATCCAAATAAAGTTGCAACAGCAGGGGTAG
TCGATTCAATGATACATACGGTGCCTACGCTAACACCTTTTAATGCAGTA
AAACAAAATATAGAGGCTGTAGCTTTTATACATCCAGACAGAAATAGTGG
TAATAAATcgtttgggttttcaaaagggAATGTTTTAGTAAAGGTCATCA
CTACACCAATCATTATCAGTTGCACAAATCCACGAATGAAGGTTAATTGT
GGACCAGACAACGGGACTTCAGGATTCTTTGTAAATACATACCTTGCACA
GCAAGAAaggaaattaaagaaaaaagctgtcaaaaatgctgacgtaaTAC
CAACTACGCGATCAAATTTTTCGGGTTTCGAAGtttcaccatttttttga
tttgtatttttcatgttgatggtcgccat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023658-exon-sc0000457-1491911889:4576..5553 | TCONS_00023658-exon-sc0000457-1491911889:4576..5553 | Clytia hemisphaerica | exon |
| TCONS_00023658-exon-sc0000457-1510915933:4576..5553 | TCONS_00023658-exon-sc0000457-1510915933:4576..5553 | Clytia hemisphaerica | exon |
| TCONS_00023658-exon-sc0000457-1575043694:4576..5553 | TCONS_00023658-exon-sc0000457-1575043694:4576..5553 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000457 | supercontig | sc0000457:4576..5553 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000620 | EamA_dom |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0016020 | membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0016020 |
membrane |
Blast
The following BLAST results are available for this feature:
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