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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023659 ID=TCONS_00023659|Name=TCONS_00023659|organism=Clytia hemisphaerica|type=transcript|length=1659bp
AGCAAAGTTTGTGACACACTCTCTTTAATAACACGAGACTTTCCCAAAGg
tattttaaggaaaaagttttttccagTTCTCACTTTTATgaataatttca
ttttagtgaaaagtaaaattgcatgaaaagattaaaaaaatttcggaTCA
TGTCTACCAATGGAGAGGAAAGATGGCAAGCAATCAAATATCAGccacaa
aatcagaaaaatttccatCAATGGATAGACCAAAAGTTacgaaaattgaa
acaaactcACCAAAAAAGTTTCGACGTAATGAAAAAGTACATTCCAGTTG
AGAAGACTATGGCAGAAAGTATGGAAAAGATGACAGATGATGATATCAAA
GACGCAGCAAAAGAATGTGGTTTCCATCCATCaattactgaacttctagt
agCAATTCAAACGGATCCAATCATACACATGCTTTTNTTGTCATTTCGTG
ACCTACTTATACACACTATGTCGCATCCACAGTACGATAGTCCTAGGGAA
CGATCGATAgatatttaacatttttgcacatgtttcatatcagaccaGAT
AGAGACCAGATATCGCAGCGGTTCTCTTTTGCTGAGATAATTAATTCTTT
TAGATTgtctttttatcaaaaattgctCCACCACTGTGCAAGTTAAATGC
CATGAATAGCTTCCCCCCTTAATCCCCCTCAACTGCCTAATCCTCCAAAA
CTGTCATGTCACCAAGATAGTAAAAACTACCATTTTGTaggaaaaattga
atcatttttgGTTGGTAGCTCTTTCTATACGGCGAAAATCGAAAAAGAGC
TTTTTTTGTCGCCATCTCGTTTAAATTGATTATTCGTAAGACTTCGTCTG
TTATAAACTTCGTCACTTTTTACCGACAAatccgaggggtaaatcacttc
caaaaaagtgtatgggattttttgagattttttgggatttttttgtgatt
tttgggatttttttggcatttttttgggattttttgggattttcgggATT
TTTTATGGGATTTTTGGAAaagtgtacgagattttttcgagtgatttacc
cctcggacaAATCTTTTACTGATAACGTAACATAGTACTAGATGTTATGG
CTTTTTTATTACGCAGTAATACGTCTATTCACTTTGtgactttttcaaat
gttttacgTCTTATAACAATCTTGCATTGTTAATGTAATGAGGTACAGGT
AAGGTAAACAGAGTTCTTCTTATTCTACGAAAGATAACCGAAAGACTGTT
CTTTTGTCTTAATACCTATTTTAGGTATCACATGTATAAAGAACAAACAG
TTCATCTATCACCCGGAAAACTGTGCATCCAGTCCTGGCTAGAGGCATTA
ATTGTGATCAACGAATGTATAAATGAAGCTCCTGAATTTGATCATGAAAA
TCCAATCACTGCACCACTGTATTGTATTTTCAGTAGCCCAATAGCAACAC
CAGTTGGAAATACCtgttttttgcatgaaaaagtGAATGCTTTGATGaag
gaaattttgattgaatgGGGTAAGTACTTAACAAGCAAATCTTCTTGTTA
CGTATTAACTGATGCACCTAAAGGTTGGTTCAGCATTAAAGCCCTAGAAG
CCATGCCGAATTTCAATGAAACATATGTCTGCGATCCATCAAAGCCTTTT
TGGGGGTTC Run BLAST on NCBI protein sequence of TCONS_00023659-protein >TCONS_00023659-protein ID=TCONS_00023659-protein|Name=TCONS_00023659-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MKRLKKFRIMSTNGEERWQAIKYQPQNQKNFHQWIDQKLRKLKQTHQKSF
DVMKKYIPVEKTMAESMEKMTDDDIKDAAKECGFHPSITELLVAIQTDPI
IHMLXLSFRDLLIHTMSHPQYDSPRERSIDI Run BLAST on NCBI transcript from alignment at sc0000457:11344..13002 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023659 ID=TCONS_00023659|Name=TCONS_00023659|organism=Clytia hemisphaerica|type=transcript|length=1659bp|location=Sequence derived from alignment at sc0000457:11344..13002 (Clytia hemisphaerica)
GAACCCCCAAAAAGGCTTTGATGGATCGCAGACATATGTTTCATTGAAAT
TCGGCATGGCTTCTAGGGCTTTAATGCTGAACCAACCTTTAGGTGCATCA
GTTAATACGTAACAAGAAGATTTGCTTGTTAAGTACTTACCCcattcaat
caaaatttccttCATCAAAGCATTCactttttcatgcaaaaaacaGGTAT
TTCCAACTGGTGTTGCTATTGGGCTACTGAAAATACAATACAGTGGTGCA
GTGATTGGATTTTCATGATCAAATTCAGGAGCTTCATTTATACATTCGTT
GATCACAATTAATGCCTCTAGCCAGGACTGGATGCACAGTTTTCCGGGTG
ATAGATGAACTGTTTGTTCTTTATACATGTGATACCTAAAATAGGTATTA
AGACAAAAGAACAGTCTTTCGGTTATCTTTCGTAGAATAAGAAGAACTCT
GTTTACCTTACCTGTACCTCATTACATTAACAATGCAAGATTGTTATAAG
AcgtaaaacatttgaaaaagtcaCAAAGTGAATAGACGTATTACTGCGTA
ATAAAAAAGCCATAACATCTAGTACTATGTTACGTTATCAGTAAAAGATT
tgtccgaggggtaaatcactcgaaaaaatctcgtacacttTTCCAAAAAT
CCCATAAAAAATcccgaaaatcccaaaaaatcccaaaaaaatgccaaaaa
aatcccaaaaatcacaaaaaaatcccaaaaaatctcaaaaaatcccatac
acttttttggaagtgatttacccctcggatTTGTCGGTAAAAAGTGACGA
AGTTTATAACAGACGAAGTCTTACGAATAATCAATTTAAACGAGATGGCG
ACAAAAAAAGCTCTTTTTCGATTTTCGCCGTATAGAAAGAGCTACCAACc
aaaaatgattcaatttttcctACAAAATGGTAGTTTTTACTATCTTGGTG
ACATGACAGTTTTGGAGGATTAGGCAGTTGAGGGGGATTAAGGGGGGAAG
CTATTCATGGCATTTAACTTGCACAGTGGTGGagcaatttttgataaaaa
gacAATCTAAAAGAATTAATTATCTCAGCAAAAGAGAACCGCTGCGATAT
CTGGTCTCTATCtggtctgatatgaaacatgtgcaaaaatgttaaatatc
TATCGATCGTTCCCTAGGACTATCGTACTGTGGATGCGACATAGTGTGTA
TAAGTAGGTCACGAAATGACAANAAAAGCATGTGTATGATTGGATCCGTT
TGAATTGctactagaagttcagtaattGATGGATGGAAACCACATTCTTT
TGCTGCGTCTTTGATATCATCATCTGTCATCTTTTCCATACTTTCTGCCA
TAGTCTTCTCAACTGGAATGTACTTTTTCATTACGTCGAAACTTTTTTGG
TgagtttgtttcaattttcgtAACTTTTGGTCTATCCATTGatggaaatt
tttctgattttgtggCTGATATTTGATTGCTTGCCATCTTTCCTCTCCAT
TGGTAGACATGAtccgaaatttttttaatcttttcatgcaattttacttt
tcactaaaatgaaattattcATAAAAGTGAGAActggaaaaaactttttc
cttaaaatacCTTTGGGAAAGTCTCGTGTTATTAAAGAGAGTGTGTCACA
AACTTTGCT Coding sequence (CDS) from alignment at sc0000457:11344..13002 >TCONS_00023659 ID=TCONS_00023659|Name=TCONS_00023659|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000457:11344..13002 (Clytia hemisphaerica)
ttaaatatcTATCGATCGTTCCCTAGGACTATCGTACTGTGGATGCGACA
TAGTGTGTATAAGTAGGTCACGAAATGACAANAAAAGCATGTGTATGATT
GGATCCGTTTGAATTGctactagaagttcagtaattGATGGATGGAAACC
ACATTCTTTTGCTGCGTCTTTGATATCATCATCTGTCATCTTTTCCATAC
TTTCTGCCATAGTCTTCTCAACTGGAATGTACTTTTTCATTACGTCGAAA
CTTTTTTGGTgagtttgtttcaattttcgtAACTTTTGGTCTATCCATTG
atggaaatttttctgattttgtggCTGATATTTGATTGCTTGCCATCTTT
CCTCTCCATTGGTAGACATGAtccgaaatttttttaatcttttcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023659-exon-sc0000457-1491911889:11344..13002 | TCONS_00023659-exon-sc0000457-1491911889:11344..13002 | Clytia hemisphaerica | exon |
| TCONS_00023659-exon-sc0000457-1510915933:11344..13002 | TCONS_00023659-exon-sc0000457-1510915933:11344..13002 | Clytia hemisphaerica | exon |
| TCONS_00023659-exon-sc0000457-1575043694:11344..13002 | TCONS_00023659-exon-sc0000457-1575043694:11344..13002 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000457 | supercontig | sc0000457:11344..13002 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011991 | WHTH_DNA-bd_dom |
Blast
The following BLAST results are available for this feature:
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