TCONS_00023661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023661
Unique NameTCONS_00023661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1063

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023661 ID=TCONS_00023661|Name=TCONS_00023661|organism=Clytia hemisphaerica|type=transcript|length=1063bp
GGTTGTTCATGACAAATATTATCTCCACAATAGTACTTGGTGAAAGATAC
GAAAATATAGAAAACCCCACATTTCAAAAGATATTAGAATTAAATAACTA
TTTACATTATGCTGTATATCATGGTGATccgatttcaatttcaaaatggc
agaaATATCTTCCTATTCACTCGACTAGAATGTTATCAAGCTACTTAGCA
AAGAGAGATGAACATTTCAGAAATGTTTTTAACAAACATAAGACGAACTT
GAAACCggaaatgttgaaaaatatgttGGACTTGTTTATCCATACATCTA
GTGATGAAGAGtttcttcaaaaaaatggaataaGCGAATTAACACGTGAC
ACGATTGAAATGGTGATGATGGACCTTCTTGATGCGAGTGTTGACAATAC
AGCTGTAAGTCTTTCTTGGATAATTTTGTACTTATTACATCATCCAAAAT
ACATGAGAGAGGCTTACAATGAGATTAAACACATGGTTGGTGCAAAAAAA
TACCCAAAGATGAGCGATCAGTCCTCACTACCACTTGTTCAGGCTATCAT
ACAAGAGACTTTACGTTTGGCAATAGGCCCTTTAAGTTTACCACATAAAT
CAACAAAAGATAGCTCACTGAAtggaaaatcaatcaaaaagggCACTCAA
GTGTTGTTTCATATTTGGAATATTCATCGAGACGAGCGGTACTGGAATGA
TCCAGAAATCTTTAAGCCAGAGCGTTGGATAgatgaaaatggaaattttt
caccaaaaatttGTAAAAGTTACTTACCGTTTTTGATGGGCAAGCGCGTG
TGCTTTGGTGAGCAAATTGCAAGAACAGAGTTATTTATAGCTCTAACAAG
ATTATTGGTTGATTTTCATATCGAACCAGAATCTGGATTGCTGCCAAGTC
TAACTGATGTCACCATAGGTGTTAACCAATACATGACACCCTTGTACAAA
GTAATTCTTACAAAACGAAAGGTATAAGAAGAAACCGATGGCTATCATCA
TACCATGTAATACCAATTAATGCTTTTCATGATTCCAGAGCATGGGAACG
TCTTCAGTCTTCT
Run BLAST on NCBI

protein sequence of TCONS_00023661-protein

>TCONS_00023661-protein ID=TCONS_00023661-protein|Name=TCONS_00023661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=324bp
LFMTNIISTIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQ
KYLPIHSTRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHTSS
DEEFLQKNGISELTRDTIEMVMMDLLDASVDNTAVSLSWIILYLLHHPKY
MREAYNEIKHMVGAKKYPKMSDQSSLPLVQAIIQETLRLAIGPLSLPHKS
TKDSSLNGKSIKKGTQVLFHIWNIHRDERYWNDPEIFKPERWIDENGNFS
PKICKSYLPFLMGKRVCFGEQIARTELFIALTRLLVDFHIEPESGLLPSL
TDVTIGVNQYMTPLYKVILTKRKV
Run BLAST on NCBI

transcript from alignment at sc0000457:19234..20296

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023661 ID=TCONS_00023661|Name=TCONS_00023661|organism=Clytia hemisphaerica|type=transcript|length=1063bp|location=Sequence derived from alignment at sc0000457:19234..20296 (Clytia hemisphaerica)
AGAAGACTGAAGACGTTCCCATGCTCTGGAATCATGAAAAGCATTAATTG
GTATTACATGGTATGATGATAGCCATCGGTTTCTTCTTATACCTTTCGTT
TTGTAAGAATTACTTTGTACAAGGGTGTCATGTATTGGTTAACACCTATG
GTGACATCAGTTAGACTTGGCAGCAATCCAGATTCTGGTTCGATATGAAA
ATCAACCAATAATCTTGTTAGAGCTATAAATAACTCTGTTCTTGCAATTT
GCTCACCAAAGCACACGCGCTTGCCCATCAAAAACGGTAAGTAACTTTTA
CaaatttttggtgaaaaatttccattttcatcTATCCAACGCTCTGGCTT
AAAGATTTCTGGATCATTCCAGTACCGCTCGTCTCGATGAATATTCCAAA
TATGAAACAACACTTGAGTGccctttttgattgattttccaTTCAGTGAG
CTATCTTTTGTTGATTTATGTGGTAAACTTAAAGGGCCTATTGCCAAACG
TAAAGTCTCTTGTATGATAGCCTGAACAAGTGGTAGTGAGGACTGATCGC
TCATCTTTGGGTATTTTTTTGCACCAACCATGTGTTTAATCTCATTGTAA
GCCTCTCTCATGTATTTTGGATGATGTAATAAGTACAAAATTATCCAAGA
AAGACTTACAGCTGTATTGTCAACACTCGCATCAAGAAGGTCCATCATCA
CCATTTCAATCGTGTCACGTGTTAATTCGCttattccatttttttgaaga
aaCTCTTCATCACTAGATGTATGGATAAACAAGTCCaacatatttttcaa
catttccGGTTTCAAGTTCGTCTTATGTTTGTTAAAAACATTTCTGAAAT
GTTCATCTCTCTTTGCTAAGTAGCTTGATAACATTCTAGTCGAGTGAATA
GGAAGATATttctgccattttgaaattgaaatcggATCACCATGATATAC
AGCATAATGTAAATAGTTATTTAATTCTAATATCTTTTGAAATGTGGGGT
TTTCTATATTTTCGTATCTTTCACCAAGTACTATTGTGGAGATAATATTT
GTCATGAACAACC

Coding sequence (CDS) from alignment at sc0000457:19234..20296

>TCONS_00023661 ID=TCONS_00023661|Name=TCONS_00023661|organism=Clytia hemisphaerica|type=CDS|length=975bp|location=Sequence derived from alignment at sc0000457:19234..20296 (Clytia hemisphaerica)
TTATACCTTTCGTTTTGTAAGAATTACTTTGTACAAGGGTGTCATGTATT
GGTTAACACCTATGGTGACATCAGTTAGACTTGGCAGCAATCCAGATTCT
GGTTCGATATGAAAATCAACCAATAATCTTGTTAGAGCTATAAATAACTC
TGTTCTTGCAATTTGCTCACCAAAGCACACGCGCTTGCCCATCAAAAACG
GTAAGTAACTTTTACaaatttttggtgaaaaatttccattttcatcTATC
CAACGCTCTGGCTTAAAGATTTCTGGATCATTCCAGTACCGCTCGTCTCG
ATGAATATTCCAAATATGAAACAACACTTGAGTGccctttttgattgatt
ttccaTTCAGTGAGCTATCTTTTGTTGATTTATGTGGTAAACTTAAAGGG
CCTATTGCCAAACGTAAAGTCTCTTGTATGATAGCCTGAACAAGTGGTAG
TGAGGACTGATCGCTCATCTTTGGGTATTTTTTTGCACCAACCATGTGTT
TAATCTCATTGTAAGCCTCTCTCATGTATTTTGGATGATGTAATAAGTAC
AAAATTATCCAAGAAAGACTTACAGCTGTATTGTCAACACTCGCATCAAG
AAGGTCCATCATCACCATTTCAATCGTGTCACGTGTTAATTCGCttattc
catttttttgaagaaaCTCTTCATCACTAGATGTATGGATAAACAAGTCC
aacatatttttcaacatttccGGTTTCAAGTTCGTCTTATGTTTGTTAAA
AACATTTCTGAAATGTTCATCTCTCTTTGCTAAGTAGCTTGATAACATTC
TAGTCGAGTGAATAGGAAGATATttctgccattttgaaattgaaatcggA
TCACCATGATATACAGCATAATGTAAATAGTTATTTAATTCTAATATCTT
TTGAAATGTGGGGTTTTCTATATTTTCGTATCTTTCACCAAGTACTATTG
TGGAGATAATATTTGTCATGAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013286XLOC_013286Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023661-proteinTCONS_00023661-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023661-exon-sc0000457-1491911889:19234..20296TCONS_00023661-exon-sc0000457-1491911889:19234..20296Clytia hemisphaericaexon
TCONS_00023661-exon-sc0000457-1510915933:19234..20296TCONS_00023661-exon-sc0000457-1510915933:19234..20296Clytia hemisphaericaexon
TCONS_00023661-exon-sc0000457-1575043694:19234..20296TCONS_00023661-exon-sc0000457-1575043694:19234..20296Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000457supercontigsc0000457:19234..20296 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
144.941	142.366	32.6442	17.1289	2.08159	2.41213	4.70834	4.63214	1.72794	4.57781	3.65274	1.71322	0	0	0	0	9.34419	8.30802	0	0	38.1875	29.9006	113.32	99.4593	1.18317	1.08555	7.46228	7.21058	47.1585	56.9445
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00023661 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.983e-48
Identity = 107/339 (31.56%), Postives = 176/339 (51.92%), Query Frame = 3 
Query:    9 MTNIISTIVLGERYENIENPTFQKILELNNYLHYAVYHGDPISISKWQKYLPIHSTRMLSSYLAKRDEHFRNVFNKHKTNLKPEMLKNMLDLFIHT--SSDEEFLQKNGISELTRDT-IEMVMMDLLDASVDNTAVSLSWIILYLLHHPKYMREAYNEIKHMVGAKKYPKMSDQSSLPLVQAIIQETLRL-AIGPLSLPHKSTKDSSLNGKSIKKGTQVLFHIWNIHRDERYWNDPEIFKPERWIDENGN--FSPKICKSYLPFLMGKRVCFGEQIARTELFIALTRLLVDFHIE-PESGLLPSLTDVTIGVNQYMTPLYKVILTKRKV*EETDGYHHT 1004
            +TN+IS I     Y+N  +P    I   N  +   +     + +  W K  P  +   L S++  R++    +   +K   + + + NMLD  +    +SD      +  SEL  D  I   + D+  A V+ T   + W + +LLH+P+  ++ Y EI   VG  + P +SD++ L L++A I+E LRL  + P+ +PHK+  DSS+   ++ KGT+V+ ++W +H +E+ W+ P+ F PER+++  G    SP +  SYLPF  G R C GE +AR ELF+ +  LL  F +E P+ G LPSL  +   V  ++   +KV +  R+   E      T
Sbjct:  175 VTNVISLICFNTSYKN-GDPELNVIQNYNEGIIDNLSKDSLVDLVPWLKIFPNKTLEKLKSHVKIRNDLLNKILENYKEKFRSDSITNMLDTLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSV--SYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVV--FLIDSFKVKIKVRQAWREAQAEGST 508
The following BLAST results are available for this feature:
BLAST of TCONS_00023661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP17A3.983e-4831.56Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
back to top