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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023686 ID=TCONS_00023686|Name=TCONS_00023686|organism=Clytia hemisphaerica|type=transcript|length=2395bpRun BLAST on NCBI transcript from alignment at sc0000458:175887..184125+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00023686 ID=TCONS_00023686|Name=TCONS_00023686|organism=Clytia hemisphaerica|type=transcript|length=8239bp|location=Sequence derived from alignment at sc0000458:175887..184125+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00023686 vs. Swiss-Prot (Human)
Match: GCC1 (GRIP and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=GCC1 PE=1 SV=1) HSP 1 Score: 124.02 bits (310), Expect = 4.974e-29 Identity = 177/633 (27.96%), Postives = 297/633 (46.92%), Query Frame = 3
Query: 354 KLNVVTKAFQTLTEKKSKMEASFQADKKNLVVEHNKTVTKFEDDVAMLTIQLERL-------KNKLGQEQKDRENDAQLHSNMLVELQNVLATERLMNDELKS------------------------QIAQLTSKKEHVKSRTPTPEVPRKDLKPTIKQRQQLDTSNGXXXXXXXXXXXXXXRISKAEVLFQLRQTQ--DEERIRELEQKVSELSDSIGHYEKQRYNDQSTIHKLKHKLE--NLEEASSPTAHTTTLSFEAFDDRNGGSGGGVKEKI----RL--SSSEEYMRYFDSEKM----YSPTADCSNHEMCNC---KQELRKLKLELDNYKSKYLQQQKKDNHTVNSQVAEEY---QSQITALKQEKKLLIRNYQEKEKNYLDAVHKLEKGRISADEKYKSEACEVQKAHSKQVGDLQM-----------ELQKQRIRSMNLLSEKDMEIEKLHK-NIYDGLPGSSSSTAAILPTVHHHHYNTENALSEEFEDFLITPPTKKEEGSLFHFMEQNSF-ERDLSKLRHQVIDLEETSRESEQREARLLQQMEVLKEE-------IRKQERSKSRESANLEYLKNICLRYMLTKSISQRKQMSITLSTILKFSPNEMKDVEK-RHAAGWW 2036
+L +T + T+T++KS+MEAS+ ADKK + + K E++ A L +L+ L K +L +Q DR + H+ ML ELQ +L ER +L+ Q QLT + E +KS + P +++ Q + + + L +E + + AE QLRQ +E+R+ LE ++SE+S+ +G YEK + DQ I KLK ++ +LE + A ++ ++ + + +K+K+ RL ++ + D EK+ P+++ ++ E +QEL++LK E + YK + Q K +T + + +E Q Q+ LK EK + +R E+ L+ H+ E AD+ +K E +Q+ H +++ Q+ EL KQR R++ +L+EKD+E+E+L + GLPG S ++ ++L++ + PT F + EQ + E +++ LR Q LE E Q + RLL++ E +EE I K R +SRE ANLEYLKNI R++ R+Q + TIL FSP E + + + +A WW
Sbjct: 164 QLATLTSSLATVTQEKSRMEASYLADKKKMKQDLEDASNKAEEERARLEGELKGLQEQIAETKARLITQQHDRAQEQSDHALMLRELQKLLQEERTQRQDLELRLEETREALAGRAYAAEQMEGFELQTKQLTREVEELKSELQAIRDEKNQPDPRLQELQ--EEAARLKSHFQAQLQQEMRKTALAE--DQLRQQSQVEEQRVAALENQISEVSELLGTYEKAKQKDQLAIQKLKERILQLDLENKTLALAASSRSPLDSHGEESSLDVNVLKDKMEKLKRLLQVAARKSQVTLDVEKLCDLEIMPSSEAADGEKATALYYQQELKQLKEEFERYKMRA-QVVLKSKNTKDGNLGKELEAAQEQLAELK-EKYISLRLSCEE----LEHQHQQE-----ADD-WKQELARLQQLHRQELERCQLDFRDRTLKLEEELHKQRDRALAVLTEKDLELEQLRSVALASGLPGRRSPVGGGG-PGDPADTSSSDSLTQALQLAAANEPT------FFLYAEQLARKEVEITSLRKQKHRLE---VEVHQLQDRLLEEGERHREEVAALQSHIEKNIRDQSREGANLEYLKNIIYRFLTLPDSLGRQQTLTAILTILHFSPEEKQVIMRLPTSASWW 770 The following BLAST results are available for this feature:
BLAST of TCONS_00023686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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