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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023705 ID=TCONS_00023705|Name=TCONS_00023705|organism=Clytia hemisphaerica|type=transcript|length=2388bp
aGAAGAGTACACCAAATGAAAACACGAAGCgaaaccaaaaaaaaacttaa
gCATCAAAGTACATGACCAGGATGACAGCTACTGGCTTAGATAATTCCTT
ATGTTTGCTACTACAGAAAGAATACAAAGCTGAAATTGAATTTACGACCa
aacaaatcaacaaaaaccTTCGAGATAACCATACCGTAAAATTCATACTG
GATGGTTTTGAGCCGTCTTCTATACTATTTCCGACcattataaataaata
tttaactGGTAGTCGAGCtgaatatctttacaaatcAGATTCTGATTATG
ATAATTTCTATGAGATCGGCCCTGGGTTGGTACGTGATTTTCGAGATAAA
CAATTGGATGATGGATTTCAAGGTTTTTATTGCAAACAATCAGAGAATCC
AGGTTTTTATACTGTTGAAGATGCCAATGGGAAATTTCTATACCCTCAAA
TCGTTCAACAAAAATTGGCCCCTTTGTTTTTAACCAAAGCAGATCAAAAT
GGTGAATATGTCGATCGTTACAGAAGAGCTCTTTACGAAGACTATCATGA
TCTTAAAATGGATCAAGCTAAAGATAACCAAGCACTCAAAGATAAAAACT
ATAATTTTGAAGACACTGAAAAGACATGTGCGGCTATATCAAGCACTCAA
ACAAGGATCATGTCATTGGACTTCGTCTTGAGAAATGGCCAGTAgagatt
ttaaagaaatttccaatgcaaaaagatATTGATAGACTGAAGGAAATTTC
GTTATTTTTGATTATCAACGGAAAGTCTACTTGCATTTCAAACACAGCAT
TCCTTGTGATTCTATTATATCAACTTATTACCTGAAAACAGCGCTGCTGA
CAGTTTCTTGTGATTTCAAGGAAGATTATTCACCAACTCAATTTAACATA
AAGAAATTCTATAAGGATGTCTAAGAGTATCTTTGCAGGTCATTACATAA
CAATCACTTGCCAAGCTTTTTTGTACCCGAGCAGAATTTATGTCAATTAA
GAGAGGACATATTATCATCGCCTCATGATTACAAGCGTTATCTTAGACAA
ATCAAGTTTGAATTTAAATATACTTATGTTTTATTTCGGATCAAACATCA
TCATTTTCTCGATGACAATAACGCTTTTGTGATTGTATTAGCAGATTTAT
ATGTGAAATTTTTGCAACCATTTATTGCATTTGTGGAATGGCTGTATAAC
AGAGAATCCAAGAACAAGACATTACCTAGTTGGCGCGAGTCTAATATTTT
GGAACCGTTTAAGCAACTGGAaagattttcatcaattcttaaCGGTACGA
AAATTGATGTGATGGATTTAAGTGCATATTTGATGGATTTGATTATAGAA
ATACCAGTTATTGATATACCGCGTATTTATCGTCAATATCGTTTCAAATA
TCCTGTAGATTTGTTTATGATGGCTGGGTTAGAGCAACAAATTCATAAAG
TGAATGTAAAGCATCAAACTTTGGTTCAACGGATGAATAACATAGTCACA
ATTATTAGAAATGAATTTAGTCGCgtggctgaggtcgaaaaacgtttcat
tttgtgatacatcttttagattccaaaaaaaacaacggaaactcgcgaat
tagtatgtgtagattacaaaatcaaaaagtttccacgatattatcgtgca
agtaacgagtaattggcgattttttgcgtttccaggcaaaattgcaaggc
ctggaaattcatgatttttggggggtcttcaaattaaaaaaagacctata
tcacatgatagagctcttcaaactgagcaaaaaagtgtattacaccaaag
tcccaacttctctagatcaaaatttattggcctatttgtggtaaaaaact
gatggaaaacagggaatttccccacaatctgcattaatttatgcaaaatt
aaacacctttttgacctttttacatatactaattcgagagtttccatcga
aaaaagtggaatctaagaggtgtatcacgaaaatcattttctagccactt
ttttcgacctcagccgcgcgactaattCTTCCAAAACAAAATGCCACCGT
TAAAAAAGAAGCAGGTAACCTACGATTCTTTCGTATGAAAACACATGAAG
AaacattaaaagatttttatagGAACGGGGACTCGTTGGTTAAAGTCAAC
AAATTCAGCAGGAAttacaaaatcttttaaaagaaatcagaaaCCGTTGG
TTCTTGGAAGGAATTCCaagaaagtaaaatttttgcaaaaactaGAGTTG
TAGACTGTTGGAAAACGTCAAAAACTATTTGTTATTTAGTTGgttctttt
ttaagttttttaactATTGGacttcttatttatttttcattgaaatagaG
GCTGCTATAtattcccgtgtgcagcagttttacaaaat Run BLAST on NCBI protein sequence of TCONS_00023705-protein >TCONS_00023705-protein ID=TCONS_00023705-protein|Name=TCONS_00023705-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
MTRMTATGLDNSLCLLLQKEYKAEIEFTTKQINKNLRDNHTVKFILDGFE
PSSILFPTIINKYLTGSRAEYLYKSDSDYDNFYEIGPGLVRDFRDKQLDD
GFQGFYCKQSENPGFYTVEDANGKFLYPQIVQQKLAPLFLTKADQNGEYV
DRYRRALYEDYHDLKMDQAKDNQALKDKNYNFEDTEKTCAAISSTQTRIM
SLDFVLRNGQ Run BLAST on NCBI transcript from alignment at sc0000458:206156..208543 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023705 ID=TCONS_00023705|Name=TCONS_00023705|organism=Clytia hemisphaerica|type=transcript|length=2388bp|location=Sequence derived from alignment at sc0000458:206156..208543 (Clytia hemisphaerica)
attttgtaaaactgctgcacacgggaataTATAGCAGCCtctatttcaat
gaaaaataaataagaagtCCAATagttaaaaaacttaaaaaagaacCAAC
TAAATAACAAATAGTTTTTGACGTTTTCCAACAGTCTACAACTCtagttt
ttgcaaaaattttactttcttGGAATTCCTTCCAAGAACCAACGGtttct
gatttcttttaaaagattttgtaaTTCCTGCTGAATTTGTTGACTTTAAC
CAACGAGTCCCCGTTCctataaaaatcttttaatgttTCTTCATGTGTTT
TCATACGAAAGAATCGTAGGTTACCTGCTTCTTTTTTAACGGTGGCATTT
TGTTTTGGAAGaattagtcgcgcggctgaggtcgaaaaaagtggctagaa
aatgattttcgtgatacacctcttagattccacttttttcgatggaaact
ctcgaattagtatatgtaaaaaggtcaaaaaggtgtttaattttgcataa
attaatgcagattgtggggaaattccctgttttccatcagttttttacca
caaataggccaataaattttgatctagagaagttgggactttggtgtaat
acacttttttgctcagtttgaagagctctatcatgtgatataggtctttt
tttaatttgaagaccccccaaaaatcatgaatttccaggccttgcaattt
tgcctggaaacgcaaaaaatcgccaattactcgttacttgcacgataata
tcgtggaaactttttgattttgtaatctacacatactaattcgcgagttt
ccgttgttttttttggaatctaaaagatgtatcacaaaatgaaacgtttt
tcgacctcagccacGCGACTAAATTCATTTCTAATAATTGTGACTATGTT
ATTCATCCGTTGAACCAAAGTTTGATGCTTTACATTCACTTTATGAATTT
GTTGCTCTAACCCAGCCATCATAAACAAATCTACAGGATATTTGAAACGA
TATTGACGATAAATACGCGGTATATCAATAACTGGTATTTCTATAATCAA
ATCCATCAAATATGCACTTAAATCCATCACATCAATTTTCGTACCGttaa
gaattgatgaaaatcttTCCAGTTGCTTAAACGGTTCCAAAATATTAGAC
TCGCGCCAACTAGGTAATGTCTTGTTCTTGGATTCTCTGTTATACAGCCA
TTCCACAAATGCAATAAATGGTTGCAAAAATTTCACATATAAATCTGCTA
ATACAATCACAAAAGCGTTATTGTCATCGAGAAAATGATGATGTTTGATC
CGAAATAAAACATAAGTATATTTAAATTCAAACTTGATTTGTCTAAGATA
ACGCTTGTAATCATGAGGCGATGATAATATGTCCTCTCTTAATTGACATA
AATTCTGCTCGGGTACAAAAAAGCTTGGCAAGTGATTGTTATGTAATGAC
CTGCAAAGATACTCTTAGACATCCTTATAGAATTTCTTTATGTTAAATTG
AGTTGGTGAATAATCTTCCTTGAAATCACAAGAAACTGTCAGCAGCGCTG
TTTTCAGGTAATAAGTTGATATAATAGAATCACAAGGAATGCTGTGTTTG
AAATGCAAGTAGACTTTCCGTTGATAATCAAAAATAACGAAATTTCCTTC
AGTCTATCAATatctttttgcattggaaatttctttaaaatctcTACTGG
CCATTTCTCAAGACGAAGTCCAATGACATGATCCTTGTTTGAGTGCTTGA
TATAGCCGCACATGTCTTTTCAGTGTCTTCAAAATTATAGTTTTTATCTT
TGAGTGCTTGGTTATCTTTAGCTTGATCCATTTTAAGATCATGATAGTCT
TCGTAAAGAGCTCTTCTGTAACGATCGACATATTCACCATTTTGATCTGC
TTTGGTTAAAAACAAAGGGGCCAATTTTTGTTGAACGATTTGAGGGTATA
GAAATTTCCCATTGGCATCTTCAACAGTATAAAAACCTGGATTCTCTGAT
TGTTTGCAATAAAAACCTTGAAATCCATCATCCAATTGTTTATCTCGAAA
ATCACGTACCAACCCAGGGCCGATCTCATAGAAATTATCATAATCAGAAT
CTgatttgtaaagatattcaGCTCGACTACCagttaaatatttatttata
atgGTCGGAAATAGTATAGAAGACGGCTCAAAACCATCCAGTATGAATTT
TACGGTATGGTTATCTCGAAggtttttgttgatttgtttGGTCGTAAATT
CAATTTCAGCTTTGTATTCTTTCTGTAGTAGCAAACATAAGGAATTATCT
AAGCCAGTAGCTGTCATCCTGGTCATGTACTTTGATGcttaagttttttt
ttggtttcGCTTCGTGTTTTCATTTGGTGTACTCTTCt Coding sequence (CDS) from alignment at sc0000458:206156..208543 >TCONS_00023705 ID=TCONS_00023705|Name=TCONS_00023705|organism=Clytia hemisphaerica|type=CDS|length=633bp|location=Sequence derived from alignment at sc0000458:206156..208543 (Clytia hemisphaerica)
cTACTGGCCATTTCTCAAGACGAAGTCCAATGACATGATCCTTGTTTGAG
TGCTTGATATAGCCGCACATGTCTTTTCAGTGTCTTCAAAATTATAGTTT
TTATCTTTGAGTGCTTGGTTATCTTTAGCTTGATCCATTTTAAGATCATG
ATAGTCTTCGTAAAGAGCTCTTCTGTAACGATCGACATATTCACCATTTT
GATCTGCTTTGGTTAAAAACAAAGGGGCCAATTTTTGTTGAACGATTTGA
GGGTATAGAAATTTCCCATTGGCATCTTCAACAGTATAAAAACCTGGATT
CTCTGATTGTTTGCAATAAAAACCTTGAAATCCATCATCCAATTGTTTAT
CTCGAAAATCACGTACCAACCCAGGGCCGATCTCATAGAAATTATCATAA
TCAGAATCTgatttgtaaagatattcaGCTCGACTACCagttaaatattt
atttataatgGTCGGAAATAGTATAGAAGACGGCTCAAAACCATCCAGTA
TGAATTTTACGGTATGGTTATCTCGAAggtttttgttgatttgtttGGTC
GTAAATTCAATTTCAGCTTTGTATTCTTTCTGTAGTAGCAAACATAAGGA
ATTATCTAAGCCAGTAGCTGTCATCCTGGTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023705-exon-sc0000458-1491911889:206156..208543 | TCONS_00023705-exon-sc0000458-1491911889:206156..208543 | Clytia hemisphaerica | exon |
| TCONS_00023705-exon-sc0000458-1510915933:206156..208543 | TCONS_00023705-exon-sc0000458-1510915933:206156..208543 | Clytia hemisphaerica | exon |
| TCONS_00023705-exon-sc0000458-1575043694:206156..208543 | TCONS_00023705-exon-sc0000458-1575043694:206156..208543 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000458 | supercontig | sc0000458:206156..208543 . |
Blast
The following BLAST results are available for this feature:
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