TCONS_00023716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00023716
Unique NameTCONS_00023716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length407

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00023716 ID=TCONS_00023716|Name=TCONS_00023716|organism=Clytia hemisphaerica|type=transcript|length=407bp
TaggaatttaaaagaaaatcaacTAACTTTATTTAAATATACATTTTCTT
GagtgaaaagaaaatcatttacaAGAAAGTCTTGCTTATATTGACAGTTT
AAAATCTAAGCATGGATTCTCTCCTGGATAACAGGCATTCCTTCGGATTA
CGAATTTAATAATATACAATTCAGTTGGTTGGTCAGGGCCAAAGGTAAGA
CTACAATTCTACAGTCGTTGTTCGATCCTCTTCATCGTGAATATATTTTG
AGTTTCAGCGGCCGACAGGTTCCTCGATCAGCGACGGACAAACGACGACA
CTTTTCGTACAATTGTCGGTTTTATAAATACCGACCAATCGATCGGCGAG
TTCAAACATATTATTCCGGAGACTGATGATGATGAACTGCGCGTTCTTTG
TTCGCTC
Run BLAST on NCBI

transcript from alignment at sc0000460:149052..149511+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00023716 ID=TCONS_00023716|Name=TCONS_00023716|organism=Clytia hemisphaerica|type=transcript|length=460bp|location=Sequence derived from alignment at sc0000460:149052..149511+ (Clytia hemisphaerica)
TaggaatttaaaagaaaatcaacTAACTTTATTTAAATATACATTTTCTT
GagtgaaaagaaaatcatttacaAGAAAGTCTTGCTTATATTGACAGTTT
AAAATCTAAGCATGGATTCTCTCCTGGATAACAGGCATTCCTTCGGATTA
CGAATTTAATAATATACAATTCAGTTGGTTGGTCAGGGCCAAAGGTAAGA
CTACAATTCTACAGTCGTTGTTCGATCCTCTTCATCGTGAATATATTTTG
AGTTTCAGCGGCCGACAGGTTCCTCGATCAGCGACGGACAAACGACGACA
CTTTTCGTACAATTGTCGGTTTTATAAATACCGACCAATCGATCGGCGAG
TTCAAACATATTATTTCGGAGACTGATAATGATGAATTGTGCGTTTTTTG
TTCGCNGAACATATTATTCCGGAGACTGATGATGATGAACTGCGCGTTCT
TTGTTCGCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_013325XLOC_013325Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00023716-exon-sc0000460-1491911889:149052..149408TCONS_00023716-exon-sc0000460-1491911889:149052..149408Clytia hemisphaericaexon
TCONS_00023716-exon-sc0000460-1510915933:149052..149408TCONS_00023716-exon-sc0000460-1510915933:149052..149408Clytia hemisphaericaexon
TCONS_00023716-exon-sc0000460-1575043694:149052..149408TCONS_00023716-exon-sc0000460-1575043694:149052..149408Clytia hemisphaericaexon
TCONS_00023716-exon-sc0000460-1491911889:149462..149511TCONS_00023716-exon-sc0000460-1491911889:149462..149511Clytia hemisphaericaexon
TCONS_00023716-exon-sc0000460-1510915933:149462..149511TCONS_00023716-exon-sc0000460-1510915933:149462..149511Clytia hemisphaericaexon
TCONS_00023716-exon-sc0000460-1575043694:149462..149511TCONS_00023716-exon-sc0000460-1575043694:149462..149511Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000460supercontigsc0000460:149052..149511 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
23.1567	23.1916	37.5214	45.0826	0	0	0	0.87401	0	0	0	0.00011956	0	2.18015e-07	0	0.508529	7.96484	0.550846	2.14735	0.800291	0.949236	0	14.7363	11.752	0	0	1.10959	6.49057	2.67235	6.20545
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00023716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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