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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00023718 ID=TCONS_00023718|Name=TCONS_00023718|organism=Clytia hemisphaerica|type=transcript|length=3917bp
TTGAGTTTTCTTAAATTCTTTTCGACCATATAATCAACGcagaataacAT
CTACATTTCTTTCTAAATTtcctatgaaaatcaaaaaaaactattaaatt
gaaagaaattataaaaaaatctgaccCCCCAACTTTTGGGTTCGCTAGAA
AGATCTATCTTTTCAGCGTAGAAAAATGTTTGGTTCTCAATCGAAATTCT
GGCAGCCGAAAATATCGCTCCaaaaagtgtcaaatttgtttGCGCCATTA
AAAAAGTACTTATTAGCTATAAATTATTCCGAGGATATTAATTGTaatgt
ctagaaaaaaatctaattataccaaagaaatgaaaaaaggaaaaaaacaa
cttttctgATTATCCGCGGTGATAAAATACCCTGAAAATATGCGtcgcat
ttttgacgacggtTTGAATTtagcgatttctttgttttcgagtgatactt
ttttcaaaatctaacggtaaattttactttcaatctggcattTGCGTAAA
AACCAGGCGATCCGCGCTAAGCTGAgcaacttaggtaggatttagcggct
tcaaatcctacctaggagattcgcttctagcctttcgggctctTACTTTA
TTGATTCTGTCGTCTATTTTTCCTCTAGCACCACATTCCAAATCCAGAGC
AACACCGAAGTCTTTTTGATCCCTGAATGAAGCTGAAAAACCTAGATTTT
GTTTGTATGCATATCCACCCTCATATGATTGGGAAAAACactaataaaat
aaaacacaagataATTCAAAATTCCTATCCattaaaaacaagaaatttcC
CATTCCCGTCGACTTTTAGCTCATCCATTTCATCTCCAATGGCTGAGAAA
TTTTCATCGGGTCACTGGGACAGGAGTATTTACATCTAAAACTTTCAAAA
GAGAACTTTTCGTTAAAAAATctgtttttggaaaattaaaaGTCTAGTAA
TAATTTTATTATTGACGAATTGCCTCCACGATTAATTCATTAATTAAAAG
TCTAGTAATAATTTTATTATTGACGAATTGCGTCCACGATTAATTCAACC
AATAAGACATCGTTCCTTAGCTTAAAATCACCATTCATTTTTTCTGAAGT
ATCCAGACCTTCCACCATCAAGCATTTAAAACCAGCATTATTCAAAGCCT
GTGTAATCTCTTCCTCGGTACAACAGAAATCAACCAGATTGAAGGGAGTT
TTTGATGTCTTATGCAGAGTGATAGGTATCCCACGATCTTGTTCAATTTC
ATCCGGTAGAGCTACACCGTCTTTTGCTTTTACTGTATTTAAAATAAACC
GGAATGACCCTCCTTTTTTCAATTTGGCTGCAAAATGTCGAAAAAGAGTT
GTTAAATCGTTTTGGTGTTTAACATGAATAGCATATGTTGCAAACATAAA
ATCTAAGCTCTTGTCCGGAAGCTCCGTCATATTGAACATATTCATAAGAG
CAAAACGAAGATTAGCTAATCGGGCGCCTTCCATTTTAGCCATTTCCAAA
AACGATTCACTAAGATCACATCCGATGATTTCACTCTTAGGGTTAGACAA
AGCTAGATGATAGGCAAACTGACCATAACCGCAGCCTATGTCAAGCATGA
CCATGCCGTCTTGATTTACAGGGGATTcttgaacaaactttttgatatga
GGATCATCATTCATTCTTTGAGCCAAACTTGGATAGCTTTTTGTGACCAC
ATCGTCGTTATATTGAAACAGAAGATTCGCAACTTCGGGCATTgttattt
ttaataaataatatGATAtctaaaatgtaaacaaaaacataTTAGTATTA
AATACAATAAGAATTTACGGCGATTTTGTTGGTATTATTTCCATAAATCC
AATAATTTTAGGCGTTCCCACAGCACAAAAATGTGTAGATAATAAAACTT
TCATCTTGCGCCTATATCCAGATTTATTTCAAACGAAAGGTACAAATTAA
TTCCTACGGGGTGCTAGTCTGAGTGGTAGACCACTACAAAATAGTAGTAG
TACAGTGTGTTCCGCAAAAAAGNTAATATATCATCGAATAAGtctaagaa
aaaagaagaacataTTTAATGTACGTATCGTAAAGACTAACTATTGTAAA
AAAGtaactaaaaactaaaactatAAAAAGTAACTGTTGTAAAAGACTTA
GGAATGGCCGATGCCTTTTAATTAGAAATATTAAGGCATACTTACACTCG
CAAGTCAAAAAGTATTAAGGGTTTTTTTCGCGTTCAGGAGCCTTGCTTGA
ATGGATATTTTCTACAAGAGAACGGTTTCAAAGATGGTCTCGATTATTCG
AATCTCATTTCGATATTTGTAATCATCACTCATCTTGCTTGACCGGTCGA
AATATTGAGTATTCCTAATACACCGCAAACCACTCTCAGCTAGAGCATCC
ATCACCTCCTCTTCAAGAACTCCGTAATTCGGTAGTCGCCAAACTTTACC
GGATAGTCTACCTAAAGTCATTTCAAATACNTTTTTCTCATAATTAATTC
ACTAAAAAGTAACGTTAATTTCAAATtggaagaaagataaaaaatctaaa
ttttaatgcaaaagaaagaaaaatcattctTCTTTCCACTGCTGAAAGAA
TTCCTTTGGAAAAGCCTTTTGTTAACGAGATAATTATTTTCCAAGCTGCA
CAGGTCAATCtttcaaaatgcaaaatttcatcaaattgacaaaaaacaga
cctgtcaatcaaaaattaattaactcTTTGGTAATAAAAATGATGCATCT
CGACTTTTTTTAAACTCCAACAGGGTGTAGTCTAAGTATCATATCTCatt
aaagaagaattttttcGAAATGATATTTGGACAATAGAAAGCTGAATAGC
TGTGCTTTCAgtagttttaaaaattattcaaaacagatcatcatttattt
caaaagttgactttattcatttgagtatacttttttgcggAACACACTGT
AGTTTAAAAGAAACATCATTCGCCAGAGGATACCAGTGATCTAACACTAT
GTAGAAAAATACACAATATATAAAGCAATCCAGAAAATTTAATATATCAT
CGAATAAGtctaagaaaaaagaagaacataTTTAATGTACGTATCGTAAA
GACTAACTATTGTAAAAAAGtaactaaaaactaaaactatAAAAAGTAAC
TGTTGTAAAAGACTTAGGAATGGCCGATGCCTTTTAATTAGAAATATTAA
GGCATACTTACACTCGCAAGTCAAAAAGTATTAAGGGTTTTTTTCGCGTT
CAGGAGCCTTGCTTGAATGGATATTTTCTACAAGAGAACGGTTTCAAAGA
TGGTCTCGATTATTCGAATCTCATTTCGATATTTGTAATCATCACTCATC
TTGCTTGACCGGTCGAAATATTGAGTATTCCTAATACACCGCAAACCACT
CTCGGCTAGAGCATCCATCACCTCCTCTTCAAGAACTCCGTAATTCGGTA
GTCGCCAAACTTTACCGGATAGTCTACCTAAAGTCATTTCAAATACGCGC
TCTTTAAGATACTCCTCAGATAGCGATGACCTATCTTTTGCTGGTAGTAC
gcaatttgttaaaaatttgaattttccatTTCGTTTTAACTTCGATGCAA
TGTGTTTAAACAATGGCGTCAGATCTTTAGGATTCTTAACGTGAAGGGAA
TAAATCGACGTAATCAAGTCGAACCCATCATCCTCAATTTTTTCCGCATT
CATATGATACATATCCATCAATATGAATTTGGCATTTTCAGGGTTTGGTT
GTTTAGTATTAGCAACGTTTACAAAATGTTGGCTAACATCAAAACCGATG
ATTTGACTTTGTGGATTCAGTGAAGCCATCCTTTTGGCAATCGCACCAGT
ACCACATCCAATATCCAACACCTGCAAAAAGAAGAATTGGCTAATTTAGA
GGTTTTGCACATTTCGC Run BLAST on NCBI transcript from alignment at sc0000460:201477..205506+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00023718 ID=TCONS_00023718|Name=TCONS_00023718|organism=Clytia hemisphaerica|type=transcript|length=4030bp|location=Sequence derived from alignment at sc0000460:201477..205506+ (Clytia hemisphaerica)
TTGAGTTTTCTTAAATTCTTTTCGACCATATAATCAACGcagaataacat
ggtattctcgggtgattttggattaataacccctcgtttagatgttttca
atgaacctcggggttcTTAATCTCAAATCACCctccaaaccatgttatta
ctagtactaacATCTACATTTCTTTCTAAATTtcctatgaaaatcaaaaa
aaactattaaattgaaagaaattataaaaaaatctgaccCCCCAACTTTT
GGGTTCGCTAGAAAGATCTATCTTTTCAGCGTAGAAAAATGTTTGGTTCT
CAATCGAAATTCTGGCAGCCGAAAATATCGCTCCaaaaagtgtcaaattt
gtttGCGCCATTAAAAAAGTACTTATTAGCTATAAATTATTCCGAGGATA
TTAATTGTaatgtctagaaaaaaatctaattataccaaagaaatgaaaaa
aggaaaaaaacaacttttctgATTATCCGCGGTGATAAAATACCCTGAAA
ATATGCGtcgcatttttgacgacggtTTGAATTtagcgatttctttgttt
tcgagtgatacttttttcaaaatctaacggtaaattttactttcaatctg
gcattTGCGTAAAAACCAGGCGATCCGCGCTAAGCTGAgcaacttaggta
ggatttagcggcttcaaatcctacctaggagattcgcttctagcctttcg
ggctctTACTTTATTGATTCTGTCGTCTATTTTTCCTCTAGCACCACATT
CCAAATCCAGAGCAACACCGAAGTCTTTTTGATCCCTGAATGAAGCTGAA
AAACCTAGATTTTGTTTGTATGCATATCCACCCTCATATGATTGGGAAAA
ACactaataaaataaaacacaagataATTCAAAATTCCTATCCattaaaa
acaagaaatttcCCATTCCCGTCGACTTTTAGCTCATCCATTTCATCTCC
AATGGCTGAGAAATTTTCATCGGGTCACTGGGACAGGAGTATTTACATCT
AAAACTTTCAAAAGAGAACTTTTCGTTAAAAAATctgtttttggaaaatt
aaaaGTCTAGTAATAATTTTATTATTGACGAATTGCCTCCACGATTAATT
CATTAATTAAAAGTCTAGTAATAATTTTATTATTGACGAATTGCGTCCAC
GATTAATTCAACCAATAAGACATCGTTCCTTAGCTTAAAATCACCATTCA
TTTTTTCTGAAGTATCCAGACCTTCCACCATCAAGCATTTAAAACCAGCA
TTATTCAAAGCCTGTGTAATCTCTTCCTCGGTACAACAGAAATCAACCAG
ATTGAAGGGAGTTTTTGATGTCTTATGCAGAGTGATAGGTATCCCACGAT
CTTGTTCAATTTCATCCGGTAGAGCTACACCGTCTTTTGCTTTTACTGTA
TTTAAAATAAACCGGAATGACCCTCCTTTTTTCAATTTGGCTGCAAAATG
TCGAAAAAGAGTTGTTAAATCGTTTTGGTGTTTAACATGAATAGCATATG
TTGCAAACATAAAATCTAAGCTCTTGTCCGGAAGCTCCGTCATATTGAAC
ATATTCATAAGAGCAAAACGAAGATTAGCTAATCGGGCGCCTTCCATTTT
AGCCATTTCCAAAAACGATTCACTAAGATCACATCCGATGATTTCACTCT
TAGGGTTAGACAAAGCTAGATGATAGGCAAACTGACCATAACCGCAGCCT
ATGTCAAGCATGACCATGCCGTCTTGATTTACAGGGGATTcttgaacaaa
ctttttgatatgaGGATCATCATTCATTCTTTGAGCCAAACTTGGATAGC
TTTTTGTGACCACATCGTCGTTATATTGAAACAGAAGATTCGCAACTTCG
GGCATTgttatttttaataaataatatGATAtctaaaatgtaaacaaaaa
cataTTAGTATTAAATACAATAAGAATTTACGGCGATTTTGTTGGTATTA
TTTCCATAAATCCAATAATTTTAGGCGTTCCCACAGCACAAAAATGTGTA
GATAATAAAACTTTCATCTTGCGCCTATATCCAGATTTATTTCAAACGAA
AGGTACAAATTAATTCCTACGGGGTGCTAGTCTGAGTGGTAGACCACTAC
AAAATAGTAGTAGTACAGTGTGTTCCGCAAAAAAGNTAATATATCATCGA
ATAAGtctaagaaaaaagaagaacataTTTAATGTACGTATCGTAAAGAC
TAACTATTGTAAAAAAGtaactaaaaactaaaactatAAAAAGTAACTGT
TGTAAAAGACTTAGGAATGGCCGATGCCTTTTAATTAGAAATATTAAGGC
ATACTTACACTCGCAAGTCAAAAAGTATTAAGGGTTTTTTTCGCGTTCAG
GAGCCTTGCTTGAATGGATATTTTCTACAAGAGAACGGTTTCAAAGATGG
TCTCGATTATTCGAATCTCATTTCGATATTTGTAATCATCACTCATCTTG
CTTGACCGGTCGAAATATTGAGTATTCCTAATACACCGCAAACCACTCTC
AGCTAGAGCATCCATCACCTCCTCTTCAAGAACTCCGTAATTCGGTAGTC
GCCAAACTTTACCGGATAGTCTACCTAAAGTCATTTCAAATACNTTTTTC
TCATAATTAATTCACTAAAAAGTAACGTTAATTTCAAATtggaagaaaga
taaaaaatctaaattttaatgcaaaagaaagaaaaatcattctTCTTTCC
ACTGCTGAAAGAATTCCTTTGGAAAAGCCTTTTGTTAACGAGATAATTAT
TTTCCAAGCTGCACAGGTCAATCtttcaaaatgcaaaatttcatcaaatt
gacaaaaaacagacctgtcaatcaaaaattaattaactcTTTGGTAATAA
AAATGATGCATCTCGACTTTTTTTAAACTCCAACAGGGTGTAGTCTAAGT
ATCATATCTCattaaagaagaattttttcGAAATGATATTTGGACAATAG
AAAGCTGAATAGCTGTGCTTTCAgtagttttaaaaattattcaaaacaga
tcatcatttatttcaaaagttgactttattcatttgagtatacttttttg
cggAACACACTGTAGTTTAAAAGAAACATCATTCGCCAGAGGATACCAGT
GATCTAACACTATGTAGAAAAATACACAATATATAAAGCAATCCAGAAAA
TTTAATATATCATCGAATAAGtctaagaaaaaagaagaacataTTTAATG
TACGTATCGTAAAGACTAACTATTGTAAAAAAGtaactaaaaactaaaac
tatAAAAAGTAACTGTTGTAAAAGACTTAGGAATGGCCGATGCCTTTTAA
TTAGAAATATTAAGGCATACTTACACTCGCAAGTCAAAAAGTATTAAGGG
TTTTTTTCGCGTTCAGGAGCCTTGCTTGAATGGATATTTTCTACAAGAGA
ACGGTTTCAAAGATGGTCTCGATTATTCGAATCTCATTTCGATATTTGTA
ATCATCACTCATCTTGCTTGACCGGTCGAAATATTGAGTATTCCTAATAC
ACCGCAAACCACTCTCGGCTAGAGCATCCATCACCTCCTCTTCAAGAACT
CCGTAATTCGGTAGTCGCCAAACTTTACCGGATAGTCTACCTAAAGTCAT
TTCAAATACGCGCTCTTTAAGATACTCCTCAGATAGCGATGACCTATCTT
TTGCTGGTAGTACgcaatttgttaaaaatttgaattttccatTTCGTTTT
AACTTCGATGCAATGTGTTTAAACAATGGCGTCAGATCTTTAGGATTCTT
AACGTGAAGGGAATAAATCGACGTAATCAAGTCGAACCCATCATCCTCAA
TTTTTTCCGCATTCATATGATACATATCCATCAATATGAATTTGGCATTT
TCAGGGTTTGGTTGTTTAGTATTAGCAACGTTTACAAAATGTTGGCTAAC
ATCAAAACCGATGATTTGACTTTGTGGATTCAGTGAAGCCATCCTTTTGG
CAATCGCACCAGTACCACATCCAATATCCAACACCTGCAAAAAGAAGAAT
TGGCTAATTTAGAGGTTTTGCACATTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00023718-exon-sc0000460-1491911889:201477..201524 | TCONS_00023718-exon-sc0000460-1491911889:201477..201524 | Clytia hemisphaerica | exon |
| TCONS_00023718-exon-sc0000460-1510915933:201477..201524 | TCONS_00023718-exon-sc0000460-1510915933:201477..201524 | Clytia hemisphaerica | exon |
| TCONS_00023718-exon-sc0000460-1575043694:201477..201524 | TCONS_00023718-exon-sc0000460-1575043694:201477..201524 | Clytia hemisphaerica | exon |
| TCONS_00023718-exon-sc0000460-1491911889:201638..205506 | TCONS_00023718-exon-sc0000460-1491911889:201638..205506 | Clytia hemisphaerica | exon |
| TCONS_00023718-exon-sc0000460-1510915933:201638..205506 | TCONS_00023718-exon-sc0000460-1510915933:201638..205506 | Clytia hemisphaerica | exon |
| TCONS_00023718-exon-sc0000460-1575043694:201638..205506 | TCONS_00023718-exon-sc0000460-1575043694:201638..205506 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000460 | supercontig | sc0000460:201477..205506 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR025714 | Methyltranfer_dom |
| IPR029063 | SAM-dependent_MTases |
Blast
The following BLAST results are available for this feature:
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